Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g11550 | OGI:11019820 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:6419845-6424350 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAACGGTCCAAAATTAGAAAGATAGAATGTGGGATTTTCTGTCAACGTATGTATAGACAGTCCAATATTCTAGGAGTAATAGCAAAACATTGGGAGTATTTCAGTCAATTTGTTTTAGTTCAGAAATTTGGGAAAATATCTAGGCTGGCTGCACCAGACCAAGGCCTGCGCCTCTCCCATCGCCGCCGCCCGCCGGCCGCACACCACGCTGATATTCCCGTGCGCCGCCACGATGCGCAACGGCAGGCCCTCTCCCAGTCGCAGGCCACAGCCGCAAGGCAAGCCCCAGATCGGGTGTGGCATCCCCCCACGTCGTCGCGGTAACCTTCTCTTCACCTGCGATCGGCCAACGGCGCCGTCCCCGCCTGCACCGGCGAGCGGCGAGCGGCGACCGTAGCCTGGGCCCTGAGGAGATGAGGGTGAGGCTCCACCGCCACTGGATCTGATCTGCCACCTTCCACCTGCGAGCGGTTTAGTGGATGTTGTCAAAATCAATTCACCGAAGGTTCGTTTTTTTTTTATTGATGATTTGCCGGTAGCGTATAGTCCCTATGTTAATCTGTTTCCCAGCATGCTTATAGGAACAATTGCTAAATTGAACAAAGGTAATAGGAACACCAAAACAATAACTGGGTATAGGTAAACTAGAAAATTGCCAAATTGGATCTATTTCTTGAAAGGAAAAAAAGGGAAAGTAACTTGAACCTATATTTTCAACCAGCAAAATGAGTAGCATTAATTTATTGTTAGCATCATAGTAATCCCCTCTAGATTCACATGGAAAATGCGAACATAAGCAGCATCTGGATATTTGTGAAGATGGAAAAATGACCTGAATAAAACAAGCAAACAAATATGCAAAAGTCCTAGAATAAGAAAGAAACATGATATTGATATGTAATAGGAACTATATATCATAAGTTTCCATGACCTTTCATTTTAACATTTTGCTACATGGGTCTCACTCCACAACATCAACCAACCAGTTTCTGCCTCAAGGATTTAGATTCTTACCTAAAGAAGAATCTACAAACCATTGCCAGCATTTGGCACCTCAGTTAAACGCCAGAGCAGCATCTTAAACTCTTTTTTGTTTCAACAGACTCGTTATAATATGATTGGATAGCATGGAATTTCCGTTTTTTTATCACCGCAGGGCATCCTGTCTCAGGTACTGGTCTTTCTGTTGCAGCATACTTCGCTGTGGACTGAGCATCGGTTGGATCAACCCTCTTGCGGAACAGAACCTTGGGTCTATTTGGGTGCTTCTTAGCTTCATTTTCCCAAATTTCTATTGTTTCTATATTGACCATAGAATCAAGAGCAACTTCCTCAAGGTAATCATGGTACTCAATCTTGATTTCAGAAAGACCAACTAGATCCTTGCAGAGCAATTGGAGTGACAGGAGATGTGGCAAAGCTCCTTTTTCAACTGTAGGGAGATTGGGATTTTGCACCACAAGGCATAAGTGTCGCATACGTGGGAAGTCACCATTTTTTATGATAAAGCCCTGAAGGTCAGATTCAACCAGTTTCAGATAAAGCAAGTGGTGCAATGTGCAAACGTTTGATAGATCCTCCTTATTCAGATTTGTTGATGAAAGGCACAGCTCTGTGAGACCACACAGTGATGTGATGAACTGTGGAAACCGGCTCAACTCGCCCTGCAGTTTCAAGGAGCTGAGATAACCATACGACTTCTCCAGACAACACAGTAGACGGTTAGGAAATTTTCTGGATCGAAGTGACAGAGAATGAGCACCAGTAGTGTCCATGCCAGCCTGAGTAAACTTCTGAATAGCCGCTGAAATTAAGCTGATACTGCTATTACGTTCAGCTGCGGGCTCGCACCATATCTTGACCTTTCTTAGTTTATTCATATGAACCATCAGGCGAGGAAACAAAGAGTTCTTGTCTACAACAAAACCTGCTAGAGTTTGCAATTTACTTTTATCTGATAATATCTTCTCTATTTTATTCGTTTCAAGGACCCAAAGGCCCCTTGCTTCCCTAATCTTAATCTTTCCAAACAGGTGAGCTAGATGTGGCATTATAATGATTTCCACAGGCAATGTGTTTATCCTTGTCTTCCTCAGGTCGAGTGTCTGTAAGCAATGCAGCCCTTTATTGATTTTTCTCGGAATATATGTAATGGTGCTCCCAAGGCCAAGGTATTTTAGATGCAACAGCTTGTATATGTACTTGACATGATCGTCCTTGAGATCATCACATTCTTCTAGATCCAAGACCCTCAACAGCTCACACTTGGCATAATCTAAAGCAAATTCCCCTGCATTTCCAAAGATCGTCAGAGACCTGGCACGAGGTTGCTTACCCTTTGGATTAGTTCCACAATCCATGTATGATTGATTTCCACTTGTAAGGCTCTGGGTTAAGAAGAGGTGGCGGCATTTGCTTCGATCTGGGTCATGGAGGGATGCAATGAAATTATCACACCTGGACTTGTGCAGCATGAATTCGTGCATGATACCGTGAGCCCTGCAGTTCTTCGCCCTTCCATTGTTGGTAACATCCATCGACCTGATGATATTTCGGTCCATTAGCTCCTCCAAGTTTGCATCTGCAACCTCCAGTGAACTGCGAGGATATTGGCATTGTACATAGCCTTCAGCTAACCATCGCCTGATCAGACTGCTCCTTCTGATGGAACAGCCATTGGGGAACACAGTCGTGTACAGTAAGCAGGTCTTGAGGGGATGGCCAGGCAGAGTGTTGTAGTTGTTCGCAAGAACTTGTCGCAGTTCTGCAAAGGCGTGCTCCTTCTCAATGTGATGACCTAGGTTGCAGCAGACTTGATTTCGGTAACATTCAGTGATCCTTTCTCGCCATAGAAAGTTTCCCACACTAACCAGAGCAAGCGGGAGGCCGTCGCATTTCTCCAGAATCGATGGCAAGTCCAACTCCAACTCAGGAGAGTATTCCTTTAGGACAGATTGCAGCAAATCCTTGGAATGGTTCACATTCAGAGTTCTCATATTGTACACAGAACCGGTACCATGGCTGCAGGCATTTGCAACTGGTTTAATAGTCGTTGTCACTAGTACTCTGCTTCTTGTTTCTGTAGGGAAGGTTGATTTTATACAGTTCCACTGCTTCTCCTCAATATCATCAAACACGAGAAGGTACCTAGCAGGTATAATGGAAATACAGAAGTGAATTTAATTCATTGGGAGAAATAACGGTTGTCAAGAGCATTTTTCAGGACAAGCAAACTAGCTAATTGTTGTTAATGATCCAAAATAAGCCTTTTTTGTGTCGGACAAAGTGTGAAGCAGTCAATAACTTAAGTTTTAACAGGTAAGTTGTACTTGTACATGCAGTTCAGATAGTTCGCTATATACGGTGAATCCAATTTCAAAGAAGAAGAAAAAAGTGTAACTGTAAATGCGAACACATGCTACGAAATTGTAAGATAGAACTGATTTCATCTGAAGGAAATTAAATTGCTGGGAAATGAGCTGAAGCAGAGAATTTCTCACCTCTTAGCATTCAGGTGTTGCCTGATATCAGCTTGGACTTGGGACTGTAGCTGGAATCTTTGCTCATCATCCTGAGGAATTTGATTGAATCTTTGGTCATCTTCCTGACGAATTTGGCCGAGTAACGCCGACAGGAGCCCCATGGTATCATCTCTGTGCTTGGACGCCACGACCCAGGCGCGGCCGTCGAACTGGCCGGCGATGTCGGGGCAGTCGTACACTGCCCTCGCGAGCGTCGTCTTCCCCGAGCCTCCGAATCCCACGATGGAGATCACGCGCATCCGCTCCGGCCGGCCCTCCACGTCCTCGAGCAGGAGCAGGTCAAGAAGCTCTTGCCTGGGCACGTTGATGCCCACAAGGCCACAGCTCTGGGCCATGTAATCCGTCGTATTTGCTGAGCCTGAGCTTGATCCGCCAGCTGCGGCGGCGGAGCCGGCGACGCCGTTGACGCCGTAGTTAGCCCTCCGCTCGTGCGCCTCCTCCAGCCGCGACTTGAGCCTCTCGACCTCGCCGGCGAACCGAGAGTCCGCCGCGAGGCGGCGGAGGAACGACGAATCGCGCTCGCACGCGGCGCAGGGCAGGAAGCGGTCGAGGCAGTCCTCGATGTCGTGCGCCAGATCCCGGAGCTCGTCGATGCATGTGGCCTGCACGGCGCTGATCGGCGGATCCTCCCCATTCCGATCCCGCGGGAGCTGGTCGTGCAGGAAGCCATGGATCACGCGGAGCTCCCGCTTGATGAAACCGATGCTGTCCTCCAGGCCCCTCCACTGCTCGTACTTCTTCTCCAGTAGCGCGAAGAGCTTCCCCACGACGATATTAGTGACAGAGCTCAGGGTCTCCATGTCTGCCTCTCAGAGCTGCACTCGCATCATCGCCGATCGAGTCGCACCTTTATCTTTCAAAGATTAATAGCAAGTCACGCGCATTTCAAAGATTGATAGTACGTATATCGCTTGAAGCCTTCAACCTCAATCAATTCTACGCTATAGAATAGTAATATCATCCT
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| CDS seq | ATGGAGACCCTGAGCTCTGTCACTAATATCGTCGTGGGGAAGCTCTTCGCGCTACTGGAGAAGAAGTACGAGCAGTGGAGGGGCCTGGAGGACAGCATCGGTTTCATCAAGCGGGAGCTCCGCGTGATCCATGGCTTCCTGCACGACCAGCTCCCGCGGGATCGGAATGGGGAGGATCCGCCGATCAGCGCCGTGCAGGCCACATGCATCGACGAGCTCCGGGATCTGGCGCACGACATCGAGGACTGCCTCGACCGCTTCCTGCCCTGCGCCGCGTGCGAGCGCGATTCGTCGTTCCTCCGCCGCCTCGCGGCGGACTCTCGGTTCGCCGGCGAGGTCGAGAGGCTCAAGTCGCGGCTGGAGGAGGCGCACGAGCGGAGGGCTAACTACGGCGTCAACGGCGTCGCCGGCTCCGCCGCCGCAGCTGGCGGATCAAGCTCAGGCTCAGCAAATACGACGGATTACATGGCCCAGAGCTGTGGCCTTGTGGGCATCAACGTGCCCAGGCAAGAGCTTCTTGACCTGCTCCTGCTCGAGGACGTGGAGGGCCGGCCGGAGCGGATGCGCGTGATCTCCATCGTGGGATTCGGAGGCTCGGGGAAGACGACGCTCGCGAGGGCAGTGTACGACTGCCCCGACATCGCCGGCCAGTTCGACGGCCGCGCCTGGGTCGTGGCGTCCAAGCACAGAGATGATACCATGGGGCTCCTGTCGGCGTTACTCGGCCAAATTCGTCAGGAAGATGACCAAAGATTCAATCAAATTCCTCAGGATGATGAGCAAAGATTCCAGCTACAGTCCCAAGTCCAAGCTGATATCAGGCAACACCTGAATGCTAAGAGGTACCTTCTCGTGTTTGATGATATTGAGGAGAAGCAGTGGAACTGTATAAAATCAACCTTCCCTACAGAAACAAGAAGCAGAGTACTAGTGACAACGACTATTAAACCAGTTGCAAATGCCTGCAGCCATGGTACCGGTTCTGTGTACAATATGAGAACTCTGAATGTGAACCATTCCAAGGATTTGCTGCAATCTGTCCTAAAGGAATACTCTCCTGAGTTGGAGTTGGACTTGCCATCGATTCTGGAGAAATGCGACGGCCTCCCGCTTGCTCTGGTTAGTGTGGGAAACTTTCTATGGCGAGAAAGGATCACTGAATGTTACCGAAATCAAGTCTGCTGCAACCTAGGTCATCACATTGAGAAGGAGCACGCCTTTGCAGAACTGCGACAAGTTCTTGCGAACAACTACAACACTCTGCCTGGCCATCCCCTCAAGACCTGCTTACTGTACACGACTGTGTTCCCCAATGGCTGTTCCATCAGAAGGAGCAGTCTGATCAGGCGATGGTTAGCTGAAGGCTATGTACAATGCCAATATCCTCGCAGTTCACTGGAGGTTGCAGATGCAAACTTGGAGGAGCTAATGGACCGAAATATCATCAGGTCGATGGATGTTACCAACAATGGAAGGGCGAAGAACTGCAGGGCTCACGGTATCATGCACGAATTCATGCTGCACAAGTCCAGGTGTGATAATTTCATTGCATCCCTCCATGACCCAGATCGAAGCAAATGCCGCCACCTCTTCTTAACCCAGAGCCTTACAAGTGGAAATCAATCATACATGGATTGTGGAACTAATCCAAAGGGTAAGCAACCTCGTGCCAGGTCTCTGACGATCTTTGGAAATGCAGGGGAATTTGCTTTAGATTATGCCAAGTGTGAGCTGTTGAGGGTCTTGGATCTAGAAGAATGTGATGATCTCAAGGACGATCATGTCAAGTACATATACAAGCTGTTGCATCTAAAATACCTTGGCCTTGGGAGCACCATTACATATATTCCGAGAAAAATCAATAAAGGGCTGCATTGCTTACAGACACTCGACCTGAGGAAGACAAGGATAAACACATTGCCTGTGGAAATCATTATAATGCCACATCTAGCTCACCTGTTTGGAAAGATTAAGATTAGGGAAGCAAGGGGCCTTTGGGTCCTTGAAACGAATAAAATAGAGAAGATATTATCAGATAAAAGTAAATTGCAAACTCTAGCAGGTTTTGTTGTAGACAAGAACTCTTTGTTTCCTCGCCTGATGGTTCATATGAATAAACTAAGAAAGGTCAAGATATGGTGCGAGCCCGCAGCTGAACGTAATAGCAGTATCAGCTTAATTTCAGCGGCTATTCAGAAGTTTACTCAGGCTGGCATGGACACTACTGGTGCTCATTCTCTGTCACTTCGATCCAGAAAATTTCCTAACCGTCTACTGTGTTGTCTGGAGAAGTCGTATGGTTATCTCAGCTCCTTGAAACTGCAGGGCGAGTTGAGCCGGTTTCCACAGTTCATCACATCACTGTGTGGTCTCACAGAGCTGTGCCTTTCATCAACAAATCTGAATAAGGAGGATCTATCAAACGTTTGCACATTGCACCACTTGCTTTATCTGAAACTGGTTGAATCTGACCTTCAGGGCTTTATCATAAAAAATGGTGACTTCCCACGTATGCGACACTTATGCCTTGTGGTGCAAAATCCCAATCTCCCTACAGTTGAAAAAGGAGCTTTGCCACATCTCCTGTCACTCCAATTGCTCTGCAAGGATCTAGTTGGTCTTTCTGAAATCAAGATTGAGTACCATGATTACCTTGAGGAAGTTGCTCTTGATTCTATGGTCAATATAGAAACAATAGAAATTTGGGAAAATGAAGCTAAGAAGCACCCAAATAGACCCAAGGTTCTGTTCCGCAAGAGGGTTGATCCAACCGATGCTCAGTCCACAGCGAAGTATGCTGCAACAGAAAGACCAGTACCTGAGACAGGATGCCCTGCGGTGATAAAAAAACGGAAATTCCATGCTATCCAATCATATTATAACGAGTCTGTTGAAACAAAAAAGAGTTTAAGATGCTGCTCTGGCGTTTAA
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| Protein seq | METLSSVTNIVVGKLFALLEKKYEQWRGLEDSIGFIKRELRVIHGFLHDQLPRDRNGEDPPISAVQATCIDELRDLAHDIEDCLDRFLPCAACERDSSFLRRLAADSRFAGEVERLKSRLEEAHERRANYGVNGVAGSAAAAGGSSSGSANTTDYMAQSCGLVGINVPRQELLDLLLLEDVEGRPERMRVISIVGFGGSGKTTLARAVYDCPDIAGQFDGRAWVVASKHRDDTMGLLSALLGQIRQEDDQRFNQIPQDDEQRFQLQSQVQADIRQHLNAKRYLLVFDDIEEKQWNCIKSTFPTETRSRVLVTTTIKPVANACSHGTGSVYNMRTLNVNHSKDLLQSVLKEYSPELELDLPSILEKCDGLPLALVSVGNFLWRERITECYRNQVCCNLGHHIEKEHAFAELRQVLANNYNTLPGHPLKTCLLYTTVFPNGCSIRRSSLIRRWLAEGYVQCQYPRSSLEVADANLEELMDRNIIRSMDVTNNGRAKNCRAHGIMHEFMLHKSRCDNFIASLHDPDRSKCRHLFLTQSLTSGNQSYMDCGTNPKGKQPRARSLTIFGNAGEFALDYAKCELLRVLDLEECDDLKDDHVKYIYKLLHLKYLGLGSTITYIPRKINKGLHCLQTLDLRKTRINTLPVEIIIMPHLAHLFGKIKIREARGLWVLETNKIEKILSDKSKLQTLAGFVVDKNSLFPRLMVHMNKLRKVKIWCEPAAERNSSISLISAAIQKFTQAGMDTTGAHSLSLRSRKFPNRLLCCLEKSYGYLSSLKLQGELSRFPQFITSLCGLTELCLSSTNLNKEDLSNVCTLHHLLYLKLVESDLQGFIIKNGDFPRMRHLCLVVQNPNLPTVEKGALPHLLSLQLLCKDLVGLSEIKIEYHDYLEEVALDSMVNIETIEIWENEAKKHPNRPKVLFRKRVDPTDAQSTAKYAATERPVPETGCPAVIKKRKFHAIQSYYNESVETKKSLRCCSGV |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g11550 | LOC_Os11g11550.1 | Chr11 | 6419845 | 6424350 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGACCCTGAGCTCTGTCACTAATATCGTCGTGGGGAAGCTCTTCGCGCTACTGGAGAAGAAGTACGAGCAGTGGAGGGGCCTGGAGGACAGCATCGGTTTCATCAAGCGGGAGCTCCGCGTGATCCATGGCTTCCTGCACGACCAGCTCCCGCGGGATCGGAATGGGGAGGATCCGCCGATCAGCGCCGTGCAGGCCACATGCATCGACGAGCTCCGGGATCTGGCGCACGACATCGAGGACTGCCTCGACCGCTTCCTGCCCTGCGCCGCGTGCGAGCGCGATTCGTCGTTCCTCCGCCGCCTCGCGGCGGACTCTCGGTTCGCCGGCGAGGTCGAGAGGCTCAAGTCGCGGCTGGAGGAGGCGCACGAGCGGAGGGCTAACTACGGCGTCAACGGCGTCGCCGGCTCCGCCGCCGCAGCTGGCGGATCAAGCTCAGGCTCAGCAAATACGACGGATTACATGGCCCAGAGCTGTGGCCTTGTGGGCATCAACGTGCCCAGGCAAGAGCTTCTTGACCTGCTCCTGCTCGAGGACGTGGAGGGCCGGCCGGAGCGGATGCGCGTGATCTCCATCGTGGGATTCGGAGGCTCGGGGAAGACGACGCTCGCGAGGGCAGTGTACGACTGCCCCGACATCGCCGGCCAGTTCGACGGCCGCGCCTGGGTCGTGGCGTCCAAGCACAGAGATGATACCATGGGGCTCCTGTCGGCGTTACTCGGCCAAATTCGTCAGGAAGATGACCAAAGATTCAATCAAATTCCTCAGGATGATGAGCAAAGATTCCAGCTACAGTCCCAAGTCCAAGCTGATATCAGGCAACACCTGAATGCTAAGAGGTACCTTCTCGTGTTTGATGATATTGAGGAGAAGCAGTGGAACTGTATAAAATCAACCTTCCCTACAGAAACAAGAAGCAGAGTACTAGTGACAACGACTATTAAACCAGTTGCAAATGCCTGCAGCCATGGTACCGGTTCTGTGTACAATATGAGAACTCTGAATGTGAACCATTCCAAGGATTTGCTGCAATCTGTCCTAAAGGAATACTCTCCTGAGTTGGAGTTGGACTTGCCATCGATTCTGGAGAAATGCGACGGCCTCCCGCTTGCTCTGGTTAGTGTGGGAAACTTTCTATGGCGAGAAAGGATCACTGAATGTTACCGAAATCAAGTCTGCTGCAACCTAGGTCATCACATTGAGAAGGAGCACGCCTTTGCAGAACTGCGACAAGTTCTTGCGAACAACTACAACACTCTGCCTGGCCATCCCCTCAAGACCTGCTTACTGTACACGACTGTGTTCCCCAATGGCTGTTCCATCAGAAGGAGCAGTCTGATCAGGCGATGGTTAGCTGAAGGCTATGTACAATGCCAATATCCTCGCAGTTCACTGGAGGTTGCAGATGCAAACTTGGAGGAGCTAATGGACCGAAATATCATCAGGTCGATGGATGTTACCAACAATGGAAGGGCGAAGAACTGCAGGGCTCACGGTATCATGCACGAATTCATGCTGCACAAGTCCAGGTGTGATAATTTCATTGCATCCCTCCATGACCCAGATCGAAGCAAATGCCGCCACCTCTTCTTAACCCAGAGCCTTACAAGTGGAAATCAATCATACATGGATTGTGGAACTAATCCAAAGGGTAAGCAACCTCGTGCCAGGTCTCTGACGATCTTTGGAAATGCAGGGGAATTTGCTTTAGATTATGCCAAGTGTGAGCTGTTGAGGGTCTTGGATCTAGAAGAATGTGATGATCTCAAGGACGATCATGTCAAGTACATATACAAGCTGTTGCATCTAAAATACCTTGGCCTTGGGAGCACCATTACATATATTCCGAGAAAAATCAATAAAGGGCTGCATTGCTTACAGACACTCGACCTGAGGAAGACAAGGATAAACACATTGCCTGTGGAAATCATTATAATGCCACATCTAGCTCACCTGTTTGGAAAGATTAAGATTAGGGAAGCAAGGGGCCTTTGGGTCCTTGAAACGAATAAAATAGAGAAGATATTATCAGATAAAAGTAAATTGCAAACTCTAGCAGGTTTTGTTGTAGACAAGAACTCTTTGTTTCCTCGCCTGATGGTTCATATGAATAAACTAAGAAAGGTCAAGATATGGTGCGAGCCCGCAGCTGAACGTAATAGCAGTATCAGCTTAATTTCAGCGGCTATTCAGAAGTTTACTCAGGCTGGCATGGACACTACTGGTGCTCATTCTCTGTCACTTCGATCCAGAAAATTTCCTAACCGTCTACTGTGTTGTCTGGAGAAGTCGTATGGTTATCTCAGCTCCTTGAAACTGCAGGGCGAGTTGAGCCGGTTTCCACAGTTCATCACATCACTGTGTGGTCTCACAGAGCTGTGCCTTTCATCAACAAATCTGAATAAGGAGGATCTATCAAACGTTTGCACATTGCACCACTTGCTTTATCTGAAACTGGTTGAATCTGACCTTCAGGGCTTTATCATAAAAAATGGTGACTTCCCACGTATGCGACACTTATGCCTTGTGGTGCAAAATCCCAATCTCCCTACAGTTGAAAAAGGAGCTTTGCCACATCTCCTGTCACTCCAATTGCTCTGCAAGGATCTAGTTGGTCTTTCTGAAATCAAGATTGAGTACCATGATTACCTTGAGGAAGTTGCTCTTGATTCTATGGTCAATATAGAAACAATAGAAATTTGGGAAAATGAAGCTAAGAAGCACCCAAATAGACCCAAGGTTCTGTTCCGCAAGAGGGTTGATCCAACCGATGCTCAGTCCACAGCGAAGTATGCTGCAACAGAAAGACCAGTACCTGAGACAGGATGCCCTGCGGTGATAAAAAAACGGAAATTCCATGCTATCCAATCATATTATAACGAGTCTGTTGAAACAAAAAAGAGTTTAAGATGCTGCTCTGGCGTTTAA
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| Protein seq | METLSSVTNIVVGKLFALLEKKYEQWRGLEDSIGFIKRELRVIHGFLHDQLPRDRNGEDPPISAVQATCIDELRDLAHDIEDCLDRFLPCAACERDSSFLRRLAADSRFAGEVERLKSRLEEAHERRANYGVNGVAGSAAAAGGSSSGSANTTDYMAQSCGLVGINVPRQELLDLLLLEDVEGRPERMRVISIVGFGGSGKTTLARAVYDCPDIAGQFDGRAWVVASKHRDDTMGLLSALLGQIRQEDDQRFNQIPQDDEQRFQLQSQVQADIRQHLNAKRYLLVFDDIEEKQWNCIKSTFPTETRSRVLVTTTIKPVANACSHGTGSVYNMRTLNVNHSKDLLQSVLKEYSPELELDLPSILEKCDGLPLALVSVGNFLWRERITECYRNQVCCNLGHHIEKEHAFAELRQVLANNYNTLPGHPLKTCLLYTTVFPNGCSIRRSSLIRRWLAEGYVQCQYPRSSLEVADANLEELMDRNIIRSMDVTNNGRAKNCRAHGIMHEFMLHKSRCDNFIASLHDPDRSKCRHLFLTQSLTSGNQSYMDCGTNPKGKQPRARSLTIFGNAGEFALDYAKCELLRVLDLEECDDLKDDHVKYIYKLLHLKYLGLGSTITYIPRKINKGLHCLQTLDLRKTRINTLPVEIIIMPHLAHLFGKIKIREARGLWVLETNKIEKILSDKSKLQTLAGFVVDKNSLFPRLMVHMNKLRKVKIWCEPAAERNSSISLISAAIQKFTQAGMDTTGAHSLSLRSRKFPNRLLCCLEKSYGYLSSLKLQGELSRFPQFITSLCGLTELCLSSTNLNKEDLSNVCTLHHLLYLKLVESDLQGFIIKNGDFPRMRHLCLVVQNPNLPTVEKGALPHLLSLQLLCKDLVGLSEIKIEYHDYLEEVALDSMVNIETIEIWENEAKKHPNRPKVLFRKRVDPTDAQSTAKYAATERPVPETGCPAVIKKRKFHAIQSYYNESVETKKSLRCCSGV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g11550 | LOC_Os11g11550.2 | Chr11 | 6420713 | 6424350 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGACCCTGAGCTCTGTCACTAATATCGTCGTGGGGAAGCTCTTCGCGCTACTGGAGAAGAAGTACGAGCAGTGGAGGGGCCTGGAGGACAGCATCGGTTTCATCAAGCGGGAGCTCCGCGTGATCCATGGCTTCCTGCACGACCAGCTCCCGCGGGATCGGAATGGGGAGGATCCGCCGATCAGCGCCGTGCAGGCCACATGCATCGACGAGCTCCGGGATCTGGCGCACGACATCGAGGACTGCCTCGACCGCTTCCTGCCCTGCGCCGCGTGCGAGCGCGATTCGTCGTTCCTCCGCCGCCTCGCGGCGGACTCTCGGTTCGCCGGCGAGGTCGAGAGGCTCAAGTCGCGGCTGGAGGAGGCGCACGAGCGGAGGGCTAACTACGGCGTCAACGGCGTCGCCGGCTCCGCCGCCGCAGCTGGCGGATCAAGCTCAGGCTCAGCAAATACGACGGATTACATGGCCCAGAGCTGTGGCCTTGTGGGCATCAACGTGCCCAGGCAAGAGCTTCTTGACCTGCTCCTGCTCGAGGACGTGGAGGGCCGGCCGGAGCGGATGCGCGTGATCTCCATCGTGGGATTCGGAGGCTCGGGGAAGACGACGCTCGCGAGGGCAGTGTACGACTGCCCCGACATCGCCGGCCAGTTCGACGGCCGCGCCTGGGTCGTGGCGTCCAAGCACAGAGATGATACCATGGGGCTCCTGTCGGCGTTACTCGGCCAAATTCGTCAGGAAGATGACCAAAGATTCAATCAAATTCCTCAGGATGATGAGCAAAGATTCCAGCTACAGTCCCAAGTCCAAGCTGATATCAGGCAACACCTGAATGCTAAGAGGTACCTTCTCGTGTTTGATGATATTGAGGAGAAGCAGTGGAACTGTATAAAATCAACCTTCCCTACAGAAACAAGAAGCAGAGTACTAGTGACAACGACTATTAAACCAGTTGCAAATGCCTGCAGCCATGGTACCGGTTCTGTGTACAATATGAGAACTCTGAATGTGAACCATTCCAAGGATTTGCTGCAATCTGTCCTAAAGGAATACTCTCCTGAGTTGGAGTTGGACTTGCCATCGATTCTGGAGAAATGCGACGGCCTCCCGCTTGCTCTGGTTAGTGTGGGAAACTTTCTATGGCGAGAAAGGATCACTGAATGTTACCGAAATCAAGTCTGCTGCAACCTAGGTCATCACATTGAGAAGGAGCACGCCTTTGCAGAACTGCGACAAGTTCTTGCGAACAACTACAACACTCTGCCTGGCCATCCCCTCAAGACCTGCTTACTGTACACGACTGTGTTCCCCAATGGCTGTTCCATCAGAAGGAGCAGTCTGATCAGGCGATGGTTAGCTGAAGGCTATGTACAATGCCAATATCCTCGCAGTTCACTGGAGGTTGCAGATGCAAACTTGGAGGAGCTAATGGACCGAAATATCATCAGGTCGATGGATGTTACCAACAATGGAAGGGCGAAGAACTGCAGGGCTCACGGTATCATGCACGAATTCATGCTGCACAAGTCCAGGTGTGATAATTTCATTGCATCCCTCCATGACCCAGATCGAAGCAAATGCCGCCACCTCTTCTTAACCCAGAGCCTTACAAGTGGAAATCAATCATACATGGATTGTGGAACTAATCCAAAGGGTAAGCAACCTCGTGCCAGGTCTCTGACGATCTTTGGAAATGCAGGGGAATTTGCTTTAGATTATGCCAAGTGTGAGCTGTTGAGGGTCTTGGATCTAGAAGAATGTGATGATCTCAAGGACGATCATGTCAAGTACATATACAAGCTGTTGCATCTAAAATACCTTGGCCTTGGGAGCACCATTACATATATTCCGAGAAAAATCAATAAAGGGCTGCATTGCTTACAGACACTCGACCTGAGGAAGACAAGGATAAACACATTGCCTGTGGAAATCATTATAATGCCACATCTAGCTCACCTGTTTGGAAAGATTAAGATTAGGGAAGCAAGGGGCCTTTGGGTCCTTGAAACGAATAAAATAGAGAAGATATTATCAGATAAAAGTAAATTGCAAACTCTAGCAGGTTTTGTTGTAGACAAGAACTCTTTGTTTCCTCGCCTGATGGTTCATATGAATAAACTAAGAAAGGTCAAGATATGGTGCGAGCCCGCAGCTGAACGTAATAGCAGTATCAGCTTAATTTCAGCGGCTATTCAGAAGTTTACTCAGGCTGGCATGGACACTACTGGTGCTCATTCTCTGTCACTTCGATCCAGAAAATTTCCTAACCGTCTACTGTGTTGTCTGGAGAAGTCGTATGGTTATCTCAGCTCCTTGAAACTGCAGGGCGAGTTGAGCCGGTTTCCACAGTTCATCACATCACTGTGTGGTCTCACAGAGCTGTGCCTTTCATCAACAAATCTGAATAAGGAGGATCTATCAAACGTTTGCACATTGCACCACTTGCTTTATCTGAAACTGGTTGAATCTGACCTTCAGGGCTTTATCATAAAAAATGGTGACTTCCCACGTATGCGACACTTATGCCTTGTGGTGCAAAATCCCAATCTCCCTACAGTTGAAAAAGGAGCTTTGCCACATCTCCTGTCACTCCAATTGCTCTGCAAGGATCTAGTTGGTCTTTCTGAAATCAAGATTGAGTACCATGATTACCTTGAGGAAGTTGCTCTTGATTCTATGGTCAATATAGAAACAATAGAAATTTGGGAAAATGAAGCTAAGAAGCACCCAAATAGACCCAAGGTTCTGTTCCGCAAGAGGGTTGATCCAACCGATGCTCAGTCCACAGCGAAGTATGCTGCAACAGAAAGACCAGTACCTGAGACAGGATGCCCTGCGGTGATAAAAAAACGGAAATTCCATGCTATCCAATCATATTATAACGAGTCTGTTGAAACAAAAAAGAGTTTAAGATGCTGCTCTGGCGTTTAA
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| Protein seq | METLSSVTNIVVGKLFALLEKKYEQWRGLEDSIGFIKRELRVIHGFLHDQLPRDRNGEDPPISAVQATCIDELRDLAHDIEDCLDRFLPCAACERDSSFLRRLAADSRFAGEVERLKSRLEEAHERRANYGVNGVAGSAAAAGGSSSGSANTTDYMAQSCGLVGINVPRQELLDLLLLEDVEGRPERMRVISIVGFGGSGKTTLARAVYDCPDIAGQFDGRAWVVASKHRDDTMGLLSALLGQIRQEDDQRFNQIPQDDEQRFQLQSQVQADIRQHLNAKRYLLVFDDIEEKQWNCIKSTFPTETRSRVLVTTTIKPVANACSHGTGSVYNMRTLNVNHSKDLLQSVLKEYSPELELDLPSILEKCDGLPLALVSVGNFLWRERITECYRNQVCCNLGHHIEKEHAFAELRQVLANNYNTLPGHPLKTCLLYTTVFPNGCSIRRSSLIRRWLAEGYVQCQYPRSSLEVADANLEELMDRNIIRSMDVTNNGRAKNCRAHGIMHEFMLHKSRCDNFIASLHDPDRSKCRHLFLTQSLTSGNQSYMDCGTNPKGKQPRARSLTIFGNAGEFALDYAKCELLRVLDLEECDDLKDDHVKYIYKLLHLKYLGLGSTITYIPRKINKGLHCLQTLDLRKTRINTLPVEIIIMPHLAHLFGKIKIREARGLWVLETNKIEKILSDKSKLQTLAGFVVDKNSLFPRLMVHMNKLRKVKIWCEPAAERNSSISLISAAIQKFTQAGMDTTGAHSLSLRSRKFPNRLLCCLEKSYGYLSSLKLQGELSRFPQFITSLCGLTELCLSSTNLNKEDLSNVCTLHHLLYLKLVESDLQGFIIKNGDFPRMRHLCLVVQNPNLPTVEKGALPHLLSLQLLCKDLVGLSEIKIEYHDYLEEVALDSMVNIETIEIWENEAKKHPNRPKVLFRKRVDPTDAQSTAKYAATERPVPETGCPAVIKKRKFHAIQSYYNESVETKKSLRCCSGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.563842 | 0.409763 | 0.340933 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0222900 | RBH | 0.067895 | 0.637575 | 0.825293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11790 | SBH | 0.348943 | 0.240629 | 0.499463 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0222900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007770 | RBH | 0.940045 | 0.723296 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007970 | SBH | 0.365392 | 5.143244 | 1.810272 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007670 | RBH | 4.880000 | 7.189763 | 0.652131 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007740 | SBH | 0.194044 | 0.375342 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007870 | RBH | 0.263206 | 0.0 | 0.227368 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0105100 | RBH | 0.245095 | 5.959211 | 0.0039005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007910 | RBH | 0.0 | 0.126530 | 0.146051 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0110900 | SBH | 8.599647 | 14.278709 | 6.833309 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0000160 | RBH | 0.278161 | 0.313381 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007940 | RBH | 0.304020 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007650 | RBH | 12.632552 | 5.476647 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007830 | SBH | 0.214812 | 0.0 | 0.522603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007990 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007930 | SBH | 0.411344 | 2.441388 | 0.656447 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007880 | RBH | 0.0 | 0.0 | 0.0 |
