Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0020050 | OGI:11019820 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:24813882-24823164 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | attatcgtaactagttcaccaacgtatagcagaacgcggtacgagaaaaatgtgaacacacaacttttctcttatacgtacagggaaaaagaaatctgaaacaactttgacggaagatgatgacacgaagagaaatttaactcagtctatagcacgtgtttggctgcaggacttattttgaaggcagtgcacaagacagacaacacggtaaaaggcggactcgctcgtcttcagatcgtcgtagtacgtagcagcgctccgctgtacacccatgatccttgaagcttcggtggtagtatcttgtgttggtgaagatcatgatttgtactgatatagtagtgattacctttacaattacgcttcgaattaatctatccgaccatcgtccttgcaaaagatgacaatcaacaaattaatacgtactgatttgatagatgctgcaaaatcgaaatgtatgtcacgccaacttcagaaaattaggaaccgcccgcaatctacaagtaatggcatcgcaacagtaaagtggtttacaacaaaaagttaccttttaaaacagtaagtaatttgaaacggaggtacttatatatacttgctatatcttgctgcacactcattatttaggtaataactaaggtctgcaaaaaatcaaatctaaatactcccttcgtttcaggttataggacgtttttgactttggtcaaagttaaactacttcaaatttaactaagtttatagataaatatagtaatatttataatatcgaattagtttgataaaatcaataattgaatatattgtcataataagtttttcttgggttgaaaatgctattattttttctacaaacttagttaaacttgaagcagtttgactttgaccaaagtcaaaacgttttataacttgaaacggagatagtattaaacaagtttcctatcacaaacttaacgacaagagaggtaccaatacaaagaggcaggtgaaataattttttttaaaaaatctatatagtaatataatggagactaataacgatcctaaatcatgttaccactcactgatatttacttaaggagcggtcgatctccaatactaatctataactttaaatttcacatatacaataatatttatagcaacaaaatcataatcagttaaaatattaatctaatgatattattttcatcaaataaaatttaatttataataaaacaagtattgatcaaatatttaaaaagttgaatgttaaaataagtgtctgacgtattcagtggaatgaagggagtacgtaaaaagaatggtacaaagctttctaatttgaatctagcttctgtatagcttccaactacttatatatcaaatggttaaacttcgttagtaagaattttgtaataattgacaggaagattgaacgcagaggcaaaagaaacgcacaagagggtatatatatatatataaaagaaaactgaccttgcagttgcagagcaggcatcacgccgttcccgtcaagccatgctggatatctcaattgaagccgtagaaggacctggaagtgaacgattcagaccggtggtggtctcgccagtagaacttgtcggggtcggagcaacagcatgagttcgctgctgcgaggatcccgtcctagctgctggtctttcggacgcgacgtatttcaccatggaatcctcgtcatttggatcgatcctttctaggaacaaaacctttggcctctttggatgcttcttggcttcattttcccaagtctctattgtgtctggattgaccttgcaatcaagggcaacttcctcaagtcgtttgagccatccgatgttgatgccagagagaccatctagagcttgacagagcagctgaagtgaaacaagtttcggcgaagctccttcttcgattgtaggcagatttgggtttcccactacaaggcataggtcaataagttctgggaagtgccctttttttatgatgaaacccctaatgtcgtcctgaaccaatttgaggtaattcagctgtctcagcttgtgcaggtttgacagctcgttggccgacagatttctagaagaaaggcacaactcagtgagaccagatagggaagtaacgaattgaggtaattggctcaactcgccatgcagtttcagcgaggtaagatggccaggtaagttcagttgagaaggatccttcaaaaccaagtcttgtagagaatccaggaagttggccaaggaatttccgagatagagtgacagagaacgaaattcagaaaccgtgtcaataccatccatgatgaatttgttgacggccatcaagaggtgtttccaggtcttgatgccttgagcagtagaatcacaccatatcttaaccttcatcaacattttcatatgggccattagttgaggaaatgctgagttttcgtccacgacaattcctgccagagtctgcaagttactctgttttgacaagtaacttcgcagtttacgcaacctaaatcttggcttgttaatcttaatcttcccaagaagatgtactaggtgaggcagcctgatgatttcaatgggcattgtctctacactggtcttctttaagtctattgtctctaagcaatgtaatctatcaattctccccggaagcatttttatggtgcccccaaggctcagatatttcagatgccacaatctatgtatatccttaatatgactgtcctccacatctttgcattcctctagatccaagactcgaagcagctcacacttcttgaaccatgcaacagcatctcctgcgtttccacagattgttaaagaccgtgcacgaagcttctcatttactgaactggtatgctgtatcatgctcgatgtgctaccaactgcagagttctggagaaataggtggcagaaactacttctctctggatcgcaaagcgatgtgatgaatttgttagacatggacattctcagcatgaactcgtacatgataccgtgagttctgcacctcttcacctttcgcttgttgcttgcatcgatgggccgaatgacattccggttgattagttcctggaagttttcatctgcgatctcctggtcgctgcgtggatactgagaatgtacatatccttcggcagaccatcgcctgattagactattcctcctgatggggtgaccatttggaaatacactcatgtactgtaagaaggtcctgggaagatcgccaggaaggctgatgaagtcacgcataagaacttgtctcagctttgtgaatacgagcttttcttccatgtgacgacctaggttacggcaaaaaatttcacagtcctcttttttcgccagagtctcccctgctaaaaagttggccacactaacaagagcaagtggatggccatcgcacttatccacgattaatgttgaattcaaccccggtgaatttcctctcaacacagtttctagcaaatccatagattcctttgcatcaagagctctcatattgtacacatatccgttaccatggctgctgcaggctttagctacttgctgacttgtcgttgtcactattattctgctttctgctttttcagggaaggcgtattttatgcagtcccactgttgctgatcgatatcatcgaaaacaattaaacaccttgcatataattgacaaaattaaattctgacagtaaggatccactcagttcaaatcattaaatgaaaaagagattcacacaaattcataaatttgaacaaaaattcgaaatttcattttcttttctgaatgtgacctttcttttggctaaattcaaacaaaataaaaaaaaattatccatgacagggcatggttgtaacccattataggtcatccatgacgtgttagaactgcgacccgataaagatgactttaaatcggtgacgggacatgtttgtgacccgttataggttatctgtgatgtgttagaactacgacccgataaagatgactttaaatcggtgacggagcatgtttgtgacccattataggttatccgtgacgtgttagaactacgacccgacaaagatgatttatatcggtgacggatcatccccgatccgatagtcacgtcataaacgggatactttttgaaccattagagatgagtcatctgaaacggatcgcattagcttgacacagatgactcgtcaaggatggctgaatctgtactagtgaatgatccttaattacatttatcaaactaatttaacttattaaatagtccattcatactatctccgtcaaaaagagaatgtatttcttgcaaatttcaaatagattagcactcaatacacatgatcatcataccctatttaatatgtttgtgatgattgaacattacttctaatctatgagcatgcacaaatgatcatcaattcatcatacccctatttaatatacatgaaaaaaagtttaatatagaatcatctattatctatttatctattatatactaaaagtttattaaacttcgtacaaacgctctcaagccgtcacgtgggactcctaaaaatgctcctaaatcaccacgtgacgttctaatatattagaaacatctagccctcgattatcatttaaacaggtgggcccattattttagatcgttagattagatttgattaaaataaaagttagacctccccatcgcctcacaagcacgtacgtacgcctcctcatcccgattgctcgcaggtaacatacgtgccccaccttttttttttttactccccacccaacaccccaaatcaaacttttttatttcatattatctgtaataccgtacaatatatttatatcacttcatttttatgctattgacatttaagcgtgtatttgatcatttattttagtataaaagttgtatagttataataggaaattctgagaatagaataaaacatttgattttcacttaaatcagatagacaagctattttatacattagattagatctatgaaaaagcaataccttacaaactaaaaataatatcttatgtacgcatataaatatatagtactattcatcctgtgtacgtacactactaaaaaaggctaaaagtaccgattcataaagggccatgggtaccggattttcatccggcaccaattggtcgacaacagtactagctaccgacacctttaccattgctcaagccaaaaaacaaaaagagagccggctcactgagcgccgtcaccgcgcatgccccatccccaaactaaattgatatccccaaccccaaaaacatccacaaatcatcaccaacttgacatcgcggaatgaacatattcaacaacaaattcacaaaaaaatcacccacaaattcatcaacaaattcacaaaaaaatcacaaacaaattctacactagaggggagggcaccgccgaaacccgtcgaccgctgccgcctcccgcctcccgcctcccctccggccagatccggcggaggggagggcgccgccgcatcccatcgcccgccgccgcccgcctcccctcttgcgtcgccgcctcttgcctgccctccccccagatccgttggaggggagggcgccgccgcatcccatcgcccgtcgtctcctgcctcccctcccgccggatccggcggaggggagggcgccgctgcatcccgtcgcccgcctcccctcttgtcggatccggcagagggtagggcgccgccgctgccgcctccgctggccagctgccgccccgcaaccactgtgcgcgcgagagagcgagtgagagagcagagagagagagagagaaacgagagaggcgagagagatagagacgatagaggtgagaggttgactcctataggataaggccgatgcatcggctcggtaggtcggctcggtttggataggtgctttttaaaaaaccgacacttataatttattataggtgccggttttttaaaaaccgacacttataacatattaaaagtgtcgtttttttaagaagaccggcacctttacttataggtgttggttttctttagaatcgacacctatagttacttaaaggtaccggttttacgtgttttcaacccacaatggaggaaaaggcgctataggtgccggctattccagcacctatagtgccgatctctataggcctttttttaagtagtggtacttactccattattcaccgaataaaaatatttttactatgtgagatgtaaattccattagattattttaaaaaatgagttagtcctccctctcatctcacccgcgtgtacgtacacctgcttcatcccgtttgtacccaggtaataaggtacttgcccacctttctttcactaccccaattagccctttaccctacaacctctacttttttatgctattgacattatttgagcgtatatttgatcattcatcttcgtataaaaattatgtaattataataggaaatcctagaaattctgaccttcgattttcacttaaattagtggattagatcacatctattaaatacatctattaaataataattcctcccaaaaaaacatgtccggcgtactgacaaaaaaaaaagccaaaaagaatatcctgtgtacattaccctcctgaaaaaactgcatgcatttttaagaaaatgaatggcaaacatgttcgactgttcattcaggcccccaacttttaaaatgcatttttaagtctccgaacttgttaaaatgtgtcatgcaggtaaccaattgccacaaccgtcaacgtttttggtcacggctatggtatttgtatggtatggggatcgttggtatcagggtgtatacgagatttaagtAaaaaaaaatggctgtaggttcaggcccattattcactagaatcaggtaatagccctaatcctgttggccaaagccggtgatgctctcattcaccaaaatcacaccagtacaacatttgggataacctatctagctgttgtcgacatggcggtatgaacaccaacacgtactcggcacagggcagtctttctcctcgaatatgaactcgacgaaatcagagatagtactagatcctttttgtcggcatccgcagacactagattgggtatatctaggcttatctctgatgtcgatgtctggttgcatgtattggtgtctattctgactgttcaatgtcccctctcctcctacggggtcttgtatttatacccataattatctcattgtctaaatagaactagggagaccaatataaatacaatccgagtagttcttgtcgtttctaatttgaactatatttgtcctttcttatccgaaactccttatatatatgaggtatgattctgtatgagacttggtatacggtgggccatactgagctttagtccattactatttatccataaccctgacaataaccgctcatgtgacatgccacaggggcattcctgtctcaaattttcttcttttttttcccttcccctttacctcttccgtctctttaTtttttttttgtttttgttttcacataaacaagaacgaagaagagaaaataaagggggaaagaaaaagaaagaaaagagtcaacacccatgtgatatgccacgtgaacgccacgtaggatcttaaagggtcgtggtaatttggaactgcagtgatgttaaagttcagggaccggatgtgtatttactttgaaaaattaactttttttctttaaaactaaagctaaagttattctaattattcacattccagtgtcagAaaaaaaagaggaaaaaaccccgaggggtactgtaaatttgagacaatttgaatagaatttctgtgaatttgaacatattctaactctatgcaaaggcacTtttttttttggctggaggcacttactatgcagactcaacagtaaattcgaaatttcagaaacagatatgaaacttcaaagcttatatacggtgcaattcaaagctagaaaaaagtctgtacgttgcaacgggtaaattctatttaaattttattattgttatatggtttagctttggtaaaattaactgtgggagtttgcttgaatatttcttttagaaaatcatgagctgcaattaggagactgtgtttcatctcaagttagcacgaggttttttaaagagatttcttatacgactcttttttattttcaaaagcaaatgagcttaaaatccaacttaaacattaaacatgcatctgtattttattatccaaaagtaaacaaacttaaaggatgactcaaacgcggatgacatattaaaatacaggcaaaaacgtcctcaatttttataatagtaatagataatagatatagatattggagatatgctgagaatatttcgatgcggggacgaactgaaatctcagctacgtgtaaataagagaattgttacctgtgaatattcatatacttttttatggcctcgtgttgtccaagatcggactgtgcttccgttgcctgagatcctgcaggtcgaagcccatcgagtaccgccgaaagaagccccttggtatcatccttatgcttccgtgcctcaacccaagcatggcaagggaaggcagctggttccgtgcaaaggcagtgttccccctggttgcagaggcagtcatacactgcctttgcgagcgtcgtcttccccgagccgccaaatcccactatggggatcaccttcagctggttcgcctggccatttatgtcggacttcaacagctcgaggagctcctgcttggatttttcgatgccgacaaccgtacccgtgccgccagtgttctcttgtgatccggctgcggcttggtggccgtcgttgacatgataatcttttctccgtttatgcgcttcctccaacgacttcttaagtctcttgatctcctccgcaaactggagagggcttgtgaatgatcgaagcttgcggtggcattcaccgcagggcaggaagaagtctaggcagtcctgcatctcgtgcgcccaatcgcgcatttcttgcaaggatgcgatctggacagcgctcgcaattatgttctgcgagagcttatcctcggtttcgctggcaatcatccgaagctctgttttcatggacctgatatctccggcaaggccatcgatcatctcgtattccttgtctagagccgcctggagcttcgacaccacgatgttggccagaggattcagtaccggcaacatggccggcaccacgacctccatctcctcgatctccaagctaccgatcaccggcttgatcactctttagtttgctctctctctctctcatgaccatgcaatctactagaaggactcc
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| CDS seq | atggaggtcgtggtgccggccatgttgccggtactgaatcctctggccaacatcgtggtgtcgaagctccaggcggctctagacaaggaatacgagatgatcgatggccttgccggagatatcaggtccatgaaaacagagcttcggatgattgccagcgaaaccgaggataagctctcgcagaacataattgcgagcgctgtccagatcgcatccttgcaagaaatgcgcgattgggcgcacgagatgcaggactgcctagacttcttcctgccctgcggtgaatgccaccgcaagcttcgatcattcacaagccctctccagtttgcggaggagatcaagagacttaagaagtcgttggaggaagcgcataaacggagaaaagattatcatgtcaacgacggccaccaagccgcagccggatcacaagagaacactggcggcacgggtacggttgtcggcatcgaaaaatccaagcaggagctcctcgagctgttgaagtccgacataaatggccaggcgaaccagctgaaggtgatccccatagtgggatttggcggctcggggaagacgacgctcgcaaaggcagtgtatgactgcctctgcaaccagggggaacactgcctttgcacggaaccagctgccttcccttgccatgcttgggttgaggcacggaagcataaggatgataccaaggggcttctttcggcggtactcgatgggcttcgacctgcaggatctcaggcaacggaagcacagtccgatcttggacaacacgaggccataaaaaagtatatgaatattcacaggtgtttaattgttttcgatgatatcgatcagcaacagtgggactgcataaaatacgccttccctgaaaaagcagaaagcagaataatagtgacaacgacaagtcagcaagtagctaaagcctgcagcagccatggtaacggatatgtgtacaatatgagagctcttgatgcaaaggaatctatggatttgctagaaactgtgttgagaggaaattcaccggggttgaattcaacattaatcgtggataagtgcgatggccatccacttgctcttgttagtgtggccaactttttagcaggggagactctggcgaaaaaagaggactgtgaaattttttgccgtaacctaggtcgtcacatggaagaaaagctcgtattcacaaagctgagacaagttcttatgcgtgacttcatcagccttcctggcgatcttcccaggaccttcttacagtacatgagtgtatttccaaatggtcaccccatcaggaggaatagtctaatcaggcgatggtctgccgaaggatatgtacattctcagtatccacgcagcgaccaggagatcgcagatgaaaacttccaggaactaatcaaccggaatgtcattcggcccatcgatgcaagcaacaagcgaaaggtgaagaggtgcagaactcacggtatcatgtacgagttcatgctgagaatgtccatgtctaacaaattcatcacatcgctttgcgatccagagagaagtagtttctgccacctatttctccagaactctgcagttggtagcacatcgagcatgatacagcataccagttcagtaaatgagaagcttcgtgcacggtctttaacaatctgtggaaacgcaggagatgctgttgcatggttcaagaagtgtgagctgcttcgagtcttggatctagaggaatgcaaagatgtggaggacagtcatattaaggatatacatagattgtggcatctgaaatatctgagccttgggggcaccataaaaatgcttccggggagaattgatagattacattgcttagagacaatagacttaaagaagaccagtgtagagacaatgcccattgaaatcatcaggctgcctcacctagtacatcttcttgggaagattaagattaacaagccaagatttaggttgcgtaaactgcgaagttacttgtcaaaacagagtaacttgcagactctggcaggaattgtcgtggacgaaaactcagcatttcctcaactaatggcccatatgaaaatgttgatgaaggttaagatatggtgtgattctactgctcaaggcatcaagacctggaaacacctcttgatggccgtcaacaaattcatcatggatggtattgacacggtttctgaatttcgttctctgtcactctatctcggaaattccttggccaacttcctggattctctacaagacttggttttgaaggatccttctcaactgaacttacctggccatcttacctcgctgaaactgcatggcgagttgagccaattacctcaattcgttacttccctatctggtctcactgagttgtgcctttcttctagaaatctgtcggccaacgagctgtcaaacctgcacaagctgagacagctgaattacctcaaattggttcaggacgacattaggggtttcatcataaaaaaagggcacttcccagaacttattgacctatgccttgtagtgggaaacccaaatctgcctacaatcgaagaaggagcttcgccgaaacttgtttcacttcagctgctctgtcaagctctagatggtctctctggcatcaacatcggatggctcaaacgacttgaggaagttgcccttgattgcaaggtcaatccagacacaatagagacttgggaaaatgaagccaagaagcatccaaagaggccaaaggttttgttcctagaaaggatcgatccaaatgacgaggattccatggtgaaatacgtcgcgtccgaaagaccagcagctaggacgggatcctcgcagcagcgaactcatgctgttgctccgaccccgacaagttctactggcgagaccaccaccggtctgaatcgttcacttccaggtccttctacggcttcaattgagatatccagcatggcttga
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| Protein seq | MEVVVPAMLPVLNPLANIVVSKLQAALDKEYEMIDGLAGDIRSMKTELRMIASETEDKLSQNIIASAVQIASLQEMRDWAHEMQDCLDFFLPCGECHRKLRSFTSPLQFAEEIKRLKKSLEEAHKRRKDYHVNDGHQAAAGSQENTGGTGTVVGIEKSKQELLELLKSDINGQANQLKVIPIVGFGGSGKTTLAKAVYDCLCNQGEHCLCTEPAAFPCHAWVEARKHKDDTKGLLSAVLDGLRPAGSQATEAQSDLGQHEAIKKYMNIHRCLIVFDDIDQQQWDCIKYAFPEKAESRIIVTTTSQQVAKACSSHGNGYVYNMRALDAKESMDLLETVLRGNSPGLNSTLIVDKCDGHPLALVSVANFLAGETLAKKEDCEIFCRNLGRHMEEKLVFTKLRQVLMRDFISLPGDLPRTFLQYMSVFPNGHPIRRNSLIRRWSAEGYVHSQYPRSDQEIADENFQELINRNVIRPIDASNKRKVKRCRTHGIMYEFMLRMSMSNKFITSLCDPERSSFCHLFLQNSAVGSTSSMIQHTSSVNEKLRARSLTICGNAGDAVAWFKKCELLRVLDLEECKDVEDSHIKDIHRLWHLKYLSLGGTIKMLPGRIDRLHCLETIDLKKTSVETMPIEIIRLPHLVHLLGKIKINKPRFRLRKLRSYLSKQSNLQTLAGIVVDENSAFPQLMAHMKMLMKVKIWCDSTAQGIKTWKHLLMAVNKFIMDGIDTVSEFRSLSLYLGNSLANFLDSLQDLVLKDPSQLNLPGHLTSLKLHGELSQLPQFVTSLSGLTELCLSSRNLSANELSNLHKLRQLNYLKLVQDDIRGFIIKKGHFPELIDLCLVVGNPNLPTIEEGASPKLVSLQLLCQALDGLSGINIGWLKRLEEVALDCKVNPDTIETWENEAKKHPKRPKVLFLERIDPNDEDSMVKYVASERPAARTGSSQQRTHAVAPTPTSSTGETTTGLNRSLPGPSTASIEISSMA |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0020050 | OsKeNa_11g0020050.01 | Chr11 | 24813882 | 24823164 | - | NAM | ||
| CDS seq | atggaggtcgtggtgccggccatgttgccggtactgaatcctctggccaacatcgtggtgtcgaagctccaggcggctctagacaaggaatacgagatgatcgatggccttgccggagatatcaggtccatgaaaacagagcttcggatgattgccagcgaaaccgaggataagctctcgcagaacataattgcgagcgctgtccagatcgcatccttgcaagaaatgcgcgattgggcgcacgagatgcaggactgcctagacttcttcctgccctgcggtgaatgccaccgcaagcttcgatcattcacaagccctctccagtttgcggaggagatcaagagacttaagaagtcgttggaggaagcgcataaacggagaaaagattatcatgtcaacgacggccaccaagccgcagccggatcacaagagaacactggcggcacgggtacggttgtcggcatcgaaaaatccaagcaggagctcctcgagctgttgaagtccgacataaatggccaggcgaaccagctgaaggtgatccccatagtgggatttggcggctcggggaagacgacgctcgcaaaggcagtgtatgactgcctctgcaaccagggggaacactgcctttgcacggaaccagctgccttcccttgccatgcttgggttgaggcacggaagcataaggatgataccaaggggcttctttcggcggtactcgatgggcttcgacctgcaggatctcaggcaacggaagcacagtccgatcttggacaacacgaggccataaaaaagtatatgaatattcacaggtgtttaattgttttcgatgatatcgatcagcaacagtgggactgcataaaatacgccttccctgaaaaagcagaaagcagaataatagtgacaacgacaagtcagcaagtagctaaagcctgcagcagccatggtaacggatatgtgtacaatatgagagctcttgatgcaaaggaatctatggatttgctagaaactgtgttgagaggaaattcaccggggttgaattcaacattaatcgtggataagtgcgatggccatccacttgctcttgttagtgtggccaactttttagcaggggagactctggcgaaaaaagaggactgtgaaattttttgccgtaacctaggtcgtcacatggaagaaaagctcgtattcacaaagctgagacaagttcttatgcgtgacttcatcagccttcctggcgatcttcccaggaccttcttacagtacatgagtgtatttccaaatggtcaccccatcaggaggaatagtctaatcaggcgatggtctgccgaaggatatgtacattctcagtatccacgcagcgaccaggagatcgcagatgaaaacttccaggaactaatcaaccggaatgtcattcggcccatcgatgcaagcaacaagcgaaaggtgaagaggtgcagaactcacggtatcatgtacgagttcatgctgagaatgtccatgtctaacaaattcatcacatcgctttgcgatccagagagaagtagtttctgccacctatttctccagaactctgcagttggtagcacatcgagcatgatacagcataccagttcagtaaatgagaagcttcgtgcacggtctttaacaatctgtggaaacgcaggagatgctgttgcatggttcaagaagtgtgagctgcttcgagtcttggatctagaggaatgcaaagatgtggaggacagtcatattaaggatatacatagattgtggcatctgaaatatctgagccttgggggcaccataaaaatgcttccggggagaattgatagattacattgcttagagacaatagacttaaagaagaccagtgtagagacaatgcccattgaaatcatcaggctgcctcacctagtacatcttcttgggaagattaagattaacaagccaagatttaggttgcgtaaactgcgaagttacttgtcaaaacagagtaacttgcagactctggcaggaattgtcgtggacgaaaactcagcatttcctcaactaatggcccatatgaaaatgttgatgaaggttaagatatggtgtgattctactgctcaaggcatcaagacctggaaacacctcttgatggccgtcaacaaattcatcatggatggtattgacacggtttctgaatttcgttctctgtcactctatctcggaaattccttggccaacttcctggattctctacaagacttggttttgaaggatccttctcaactgaacttacctggccatcttacctcgctgaaactgcatggcgagttgagccaattacctcaattcgttacttccctatctggtctcactgagttgtgcctttcttctagaaatctgtcggccaacgagctgtcaaacctgcacaagctgagacagctgaattacctcaaattggttcaggacgacattaggggtttcatcataaaaaaagggcacttcccagaacttattgacctatgccttgtagtgggaaacccaaatctgcctacaatcgaagaaggagcttcgccgaaacttgtttcacttcagctgctctgtcaagctctagatggtctctctggcatcaacatcggatggctcaaacgacttgaggaagttgcccttgattgcaaggtcaatccagacacaatagagacttgggaaaatgaagccaagaagcatccaaagaggccaaaggttttgttcctagaaaggatcgatccaaatgacgaggattccatggtgaaatacgtcgcgtccgaaagaccagcagctaggacgggatcctcgcagcagcgaactcatgctgttgctccgaccccgacaagttctactggcgagaccaccaccggtctgaatcgttcacttccaggtccttctacggcttcaattgagatatccagcatggcttga
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| Protein seq | MEVVVPAMLPVLNPLANIVVSKLQAALDKEYEMIDGLAGDIRSMKTELRMIASETEDKLSQNIIASAVQIASLQEMRDWAHEMQDCLDFFLPCGECHRKLRSFTSPLQFAEEIKRLKKSLEEAHKRRKDYHVNDGHQAAAGSQENTGGTGTVVGIEKSKQELLELLKSDINGQANQLKVIPIVGFGGSGKTTLAKAVYDCLCNQGEHCLCTEPAAFPCHAWVEARKHKDDTKGLLSAVLDGLRPAGSQATEAQSDLGQHEAIKKYMNIHRCLIVFDDIDQQQWDCIKYAFPEKAESRIIVTTTSQQVAKACSSHGNGYVYNMRALDAKESMDLLETVLRGNSPGLNSTLIVDKCDGHPLALVSVANFLAGETLAKKEDCEIFCRNLGRHMEEKLVFTKLRQVLMRDFISLPGDLPRTFLQYMSVFPNGHPIRRNSLIRRWSAEGYVHSQYPRSDQEIADENFQELINRNVIRPIDASNKRKVKRCRTHGIMYEFMLRMSMSNKFITSLCDPERSSFCHLFLQNSAVGSTSSMIQHTSSVNEKLRARSLTICGNAGDAVAWFKKCELLRVLDLEECKDVEDSHIKDIHRLWHLKYLSLGGTIKMLPGRIDRLHCLETIDLKKTSVETMPIEIIRLPHLVHLLGKIKINKPRFRLRKLRSYLSKQSNLQTLAGIVVDENSAFPQLMAHMKMLMKVKIWCDSTAQGIKTWKHLLMAVNKFIMDGIDTVSEFRSLSLYLGNSLANFLDSLQDLVLKDPSQLNLPGHLTSLKLHGELSQLPQFVTSLSGLTELCLSSRNLSANELSNLHKLRQLNYLKLVQDDIRGFIIKKGHFPELIDLCLVVGNPNLPTIEEGASPKLVSLQLLCQALDGLSGINIGWLKRLEEVALDCKVNPDTIETWENEAKKHPKRPKVLFLERIDPNDEDSMVKYVASERPAARTGSSQQRTHAVAPTPTSSTGETTTGLNRSLPGPSTASIEISSMA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0020050 | OsKeNa_11g0020050.02 | Chr11 | 24821719 | 24823164 | - | IsoSeq | ||
| CDS seq | atgactgcctctgcaaccagggggaacactgcctttgcacggaaccagctgccttcccttgccatgcttgggttgaggcacggaagcataaggatgataccaaggggcttctttcggcggtactcgatgggcttcgacctgcaggatctcaggcaacggaagcacagtccgatcttggacaacacgagg |
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| Protein seq | MTASATRGNTAFARNQLPSLAMLGLRHGSIRMIPRGFFRRYSMGFDLQDLRQRKHSPILDNTR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.492458 | 1.480033 | 3.188077 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0222900 | RBH | 0.067895 | 0.637575 | 0.825293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39320 | SBH | 0.968592 | 1.189013 | 0.135217 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0222900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019890 | RBH | 2.833700 | 14.494986 | 4.865631 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020430 | RBH | 0.000000 | 0.000000 | 0.216234 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019800 | RBH | 3.771688 | 4.442852 | 6.131286 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023610 | SBH | 0.000000 | 0.114188 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019900 | RBH | 6.415038 | 11.786870 | 15.003955 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0361400 | SBH | 0.0049915 | 0.014131 | 0.009293 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020360 | RBH | 0.496075 | 0.386555 | 0.639003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0373400 | RBH | 9.40703 | 45.034685 | 0.03948 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024290 | SBH | 0.169743 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020360 | RBH | 0.652731 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019820 | RBH | 3.800566 | 11.242914 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023600 | SBH | 0.297426 | 0.0 | 0.815137 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008000 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019680 | RBH | 1.198622 | 1.217656 | 2.971114 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020060 | RBH | 3.612054 | 26.399912 | 10.200569 |
