Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0024290 | OGI:11081510 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:30232226-30235650 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagcagtctgtctgatccacaaaagtatctctgcatctcttgtgtgagccaggtcgcatgcaagcaacaaaacacgcccatacttgtccatggagtctgctgcggcgagtgctttctgggaggccatcatggggaagctgttcatggtgctggagaaccagtacaacaagcacaaggtcctcgagcaagaaatcagctccctccagcaagagttccgcatgattgccgccgtcatggacgaccagctcctttctatgggcaggagcgaagcacgcacatctgttgcatggctgcacaacgaggagatgctcgatcttgagcatgacattgaggactgcgtcgaccgtttcatgcacctcctcacctgcaagcatcatcatggtggggtgcgccagatggcacatgaggtaaagatccgctcgagcttcagtgaagagatccagaagctcaggaggcgcctcagtgaggtgcgccagtgagtcgtcaacatcaattcacctattgcccgtcaatcagccaggtcatcgtcatcgactccgtatcgtgctgcgcacagtctggtgggcattaggcagcccatggaggagctcctctcgctgctagatgaagtggagggcgagccaaagcagttgagggtgacctccatcgtggggttcagtggcttggggaagaccaccctcgccaaggcggtctacgatagccctcatgcaaaggataaattctgcctccgtgcgtggatcaccgctgatggctcaccggaaacgagcaattggatgaaggagatcctgcgcggtgtaCTccaacaagtgcgtcccggcgatgccatggatgtcgatggccagcatcttgaagcctcgctcaaggagtacctcaaggacaagaggtgaacctcaccgttaggcgcttttatttttatttcctttacaagaacatttttcatttttaagtacaccaataactcttcacgtggaatgttcttggttcaattagctaatttaattatctaaaagattgttcactaatgaccattgcatatgaaaaTttatttttacttaaccttttcaccttgtttttcaatttgaccctcttaatattcctcctcaattctcaatttggttattaggtatttaattatcatcgatgacatcaggatggatcaatggaggatcataagttcagcctttgaaaataatggtacaggcagcaggatattacttaccacaactattcagtcagtaactaataggtgcagccatggcaatggttatgtgtatcaaatgaacacacttggtaaagaagactctgaggaactagctttttcagtgcttagatcacctgagttggagaaccattcagaatcattactagggaaatgtgatggtcttcctcttgctctggtcagtgtctctgattatctgaagagctcaactgaggcaacgggagagttgtgtgcaaagctatgccgtgatctgggttctcatctgacaggaaaccatggccatgacaacttttcagaactcaggaaggtgcttcttggcaactatgacagtttttccggctctgctctgagttgcttgctgtatcttggtatattcccaaacaatcatcctctcaggaagaaagttctaatccggcggtggttagctgaaggatacgcaagaagtgatgacccttggcgcagcgaagaggacactgcagatgacaatttcagtaaccttattgaccagaatatcattcagccagttgacacaagaaacaattctgaagtgaagacgtgcaaaactcatggaattatgcatgaatttttgctgaacaggtccttggccaagagattcatcacgacatcaccgcatgatccaagagttggaatcaatactaccaattcacgccacctttctgttgatgctgctaaacagacaaaatgcatggcatctgacgaggaattatctcgagtccgatctctgacaatctttggggatgcaggtgatgcaatttcttatcttcacaagtgcaatctgatacgagtcttggatctacaagaatgcagtgatttgaacgataatcatctgaaacgcatatgtgtactgtcaccgtggcatctgaaatacctgaaccttgggggcaatatcagtgagcttccaaggagtattgaagggctgcattgtttagagacactggatttaagggaaacagagataaagtttttgcccattgaaggtatcatgctgccccacttagctcacttgtttggaaagtttatgcttcacaaagatgatctgaacaatgtgaagaagataagtaaactattaaaattgttttcatcaaataaaagcaacttgcaaactttagcaggatttatcactgacgggaggaaaggatttcttcaacttattggtcatatgaaaaaactgaggaaggttaagatatggtgcaggcatgttgaaggtagcagtaattacattgctgatctttcaaaggccattcaggaatttaccaaggctcccattgacatggacagagtccgttctctctcaattgattccgaagaatactgtgaaaaattcctaagttcacttgatttggagccatgctctgaatattcgaaataccatctaagttcactaaagatacatggcaagttactccggttgcctccattttttacttctttgtcaggtctcattgatctgtgtattacaccagctactctgacacaagatcatctatcagcactgataaatctgaacagactgctgtacctcaaactgattgctgacaagctcgagaatttagagataaaacatggagcactactgagcctgagacgcctgtgctttgtggtgaaaagtgtggcgttagcgcagccaaaaatcgagcaaggagctctaccaaaccttgtttcacttcagctgctctgtcaaggactagttggtctttccggcatcgagatcagacacctgaaaaatctcaaggaagttacgattgactctggagtgactgcgcaaacaaggcaagattgggaacaagctgcaaagaaccaccctaacaggcctagagttttgttgctcggaaaggttgatccagtggaaagcgaggaaccgggaagaccctgtgccataagggggagggggaaaagttctataggccaagaaagttcagaagatggttcagattctagccttaagaggatgagacttgcagagccttcttcttcttcgcagcttcaggtgaccggccatccgcatccggtggtggtagcagccaccgaagcagcatcccagccttccatggcaaatctctagcacatttatacaacttaagcagacaggctgcaataaagactgtaatattgaccttttgcagagttaaatgtatccTAtatatcgggatacccaaattatgaaccgagtttcgtgtaaaaaac
More
|
||||||||||
| CDS seq | atgacattgaggactgcgtcgaccgtttcatgcacctcctcacctgcaagcatcatcatggtggggtgcgccagatggcacatgaggtcatcgtcatcgactccgtatcgtgctgcgcacagtctggtgggcattaggcagcccatggaggagctcctctcgctgctagatgaagtggagggcgagccaaagcagttgagggtgacctccatcgtggggttcagtggcttggggaagaccaccctcgccaaggcggtctacgatagccctcatgcaaaggataaattctgcctccgtgcgtggatcaccgctgatggctcaccggaaacgagcaattggatgaaggagatcctgcgcggtgtaCTccaacaagtgcgtcccggcgatgccatggatgtcgatggccagcatcttgaagcctcgctcaaggagtacctcaaggacaagaggtatttaattatcatcgatgacatcaggatggatcaatggaggatcataagttcagcctttgaaaataatggtacaggcagcaggatattacttaccacaactattcagtcagtaactaataggtgcagccatggcaatggttatgtgtatcaaatgaacacacttggtaaagaagactctgaggaactagctttttcagtgcttagatcacctgagttggagaaccattcagaatcattactagggaaatgtgatggtcttcctcttgctctggtcagtgtctctgattatctgaagagctcaactgaggcaacgggagagttgtgtgcaaagctatgccgtgatctgggttctcatctgacaggaaaccatggccatgacaacttttcagaactcaggaaggtgcttcttggcaactatgacagtttttccggctctgctctgagttgcttgctgtatcttggtatattcccaaacaatcatcctctcaggaagaaagttctaatccggcggtggttagctgaaggatacgcaagaagtgatgacccttggcgcagcgaagaggacactgcagatgacaatttcagtaaccttattgaccagaatatcattcagccagttgacacaagaaacaattctgaagtgaagacgtgcaaaactcatggaattatgcatgaatttttgctgaacaggtccttggccaagagattcatcacgacatcaccgcatgatccaagagttggaatcaatactaccaattcacgccacctttctgttgatgctgctaaacagacaaaatgcatggcatctgacgaggaattatctcgagtccgatctctgacaatctttggggatgcaggtgatgcaatttcttatcttcacaagtgcaatctgatacgagtcttggatctacaagaatgcagtgatttgaacgataatcatctgaaacgcatatgtgtactgtcaccgtggcatctgaaatacctgaaccttgggggcaatatcagtgagcttccaaggagtattgaagggctgcattgtttagagacactggatttaagggaaacagagataaagtttttgcccattgaaggtatcatgctgccccacttagctcacttgtttggaaagtttatgcttcacaaagatgatctgaacaatgtgaagaagataagtaaactattaaaattgttttcatcaaataaaagcaacttgcaaactttagcaggatttatcactgacgggaggaaaggatttcttcaacttattggtcatatgaaaaaactgaggaaggttaagatatggtgcaggcatgttgaaggtagcagtaattacattgctgatctttcaaaggccattcaggaatttaccaaggctcccattgacatggacagagtccgttctctctcaattgattccgaagaatactgtgaaaaattcctaagttcacttgatttggagccatgctctgaatattcgaaataccatctaagttcactaaagatacatggcaagttactccggttgcctccattttttacttctttgtcaggtctcattgatctgtgtattacaccagctactctgacacaagatcatctatcagcactgataaatctgaacagactgctgtacctcaaactgattgctgacaagctcgagaatttagagataaaacatggagcactactgagcctgagacgcctgtgctttgtggtgaaaagtgtggcgttagcgcagccaaaaatcgagcaaggagctctaccaaaccttgtttcacttcagctgctctgtcaaggactagttggtctttccggcatcgagatcagacacctgaaaaatctcaaggaagttacgattgactctggagtgactgcgcaaacaaggcaagattgggaacaagctgcaaagaaccaccctaacaggcctagagttttgttgctcggaaaggttgatccagtggaaagcgaggaaccgggaagaccctgtgccataagggggagggggaaaagttctataggccaagaaagttcagaagatggttcagattctagccttaagaggatgagacttgcagagccttcttcttcttcgcagcttcaggtgaccggccatccgcatccggtggtggtagcagccaccgaagcagcatcccagccttccatggcaaatctctag
More
|
||||||||||
| Protein seq | MTLRTASTVSCTSSPASIIMVGCARWHMRSSSSTPYRAAHSLVGIRQPMEELLSLLDEVEGEPKQLRVTSIVGFSGLGKTTLAKAVYDSPHAKDKFCLRAWITADGSPETSNWMKEILRGVLQQVRPGDAMDVDGQHLEASLKEYLKDKRYLIIIDDIRMDQWRIISSAFENNGTGSRILLTTTIQSVTNRCSHGNGYVYQMNTLGKEDSEELAFSVLRSPELENHSESLLGKCDGLPLALVSVSDYLKSSTEATGELCAKLCRDLGSHLTGNHGHDNFSELRKVLLGNYDSFSGSALSCLLYLGIFPNNHPLRKKVLIRRWLAEGYARSDDPWRSEEDTADDNFSNLIDQNIIQPVDTRNNSEVKTCKTHGIMHEFLLNRSLAKRFITTSPHDPRVGINTTNSRHLSVDAAKQTKCMASDEELSRVRSLTIFGDAGDAISYLHKCNLIRVLDLQECSDLNDNHLKRICVLSPWHLKYLNLGGNISELPRSIEGLHCLETLDLRETEIKFLPIEGIMLPHLAHLFGKFMLHKDDLNNVKKISKLLKLFSSNKSNLQTLAGFITDGRKGFLQLIGHMKKLRKVKIWCRHVEGSSNYIADLSKAIQEFTKAPIDMDRVRSLSIDSEEYCEKFLSSLDLEPCSEYSKYHLSSLKIHGKLLRLPPFFTSLSGLIDLCITPATLTQDHLSALINLNRLLYLKLIADKLENLEIKHGALLSLRRLCFVVKSVALAQPKIEQGALPNLVSLQLLCQGLVGLSGIEIRHLKNLKEVTIDSGVTAQTRQDWEQAAKNHPNRPRVLLLGKVDPVESEEPGRPCAIRGRGKSSIGQESSEDGSDSSLKRMRLAEPSSSSQLQVTGHPHPVVVAATEAASQPSMANL |
||||||||||
| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0024290 | OsLima_11g0024290.01 | Chr11 | 30232226 | 30235650 | + | NAM | ||
| CDS seq | atgacattgaggactgcgtcgaccgtttcatgcacctcctcacctgcaagcatcatcatggtggggtgcgccagatggcacatgaggtcatcgtcatcgactccgtatcgtgctgcgcacagtctggtgggcattaggcagcccatggaggagctcctctcgctgctagatgaagtggagggcgagccaaagcagttgagggtgacctccatcgtggggttcagtggcttggggaagaccaccctcgccaaggcggtctacgatagccctcatgcaaaggataaattctgcctccgtgcgtggatcaccgctgatggctcaccggaaacgagcaattggatgaaggagatcctgcgcggtgtaCTccaacaagtgcgtcccggcgatgccatggatgtcgatggccagcatcttgaagcctcgctcaaggagtacctcaaggacaagaggtatttaattatcatcgatgacatcaggatggatcaatggaggatcataagttcagcctttgaaaataatggtacaggcagcaggatattacttaccacaactattcagtcagtaactaataggtgcagccatggcaatggttatgtgtatcaaatgaacacacttggtaaagaagactctgaggaactagctttttcagtgcttagatcacctgagttggagaaccattcagaatcattactagggaaatgtgatggtcttcctcttgctctggtcagtgtctctgattatctgaagagctcaactgaggcaacgggagagttgtgtgcaaagctatgccgtgatctgggttctcatctgacaggaaaccatggccatgacaacttttcagaactcaggaaggtgcttcttggcaactatgacagtttttccggctctgctctgagttgcttgctgtatcttggtatattcccaaacaatcatcctctcaggaagaaagttctaatccggcggtggttagctgaaggatacgcaagaagtgatgacccttggcgcagcgaagaggacactgcagatgacaatttcagtaaccttattgaccagaatatcattcagccagttgacacaagaaacaattctgaagtgaagacgtgcaaaactcatggaattatgcatgaatttttgctgaacaggtccttggccaagagattcatcacgacatcaccgcatgatccaagagttggaatcaatactaccaattcacgccacctttctgttgatgctgctaaacagacaaaatgcatggcatctgacgaggaattatctcgagtccgatctctgacaatctttggggatgcaggtgatgcaatttcttatcttcacaagtgcaatctgatacgagtcttggatctacaagaatgcagtgatttgaacgataatcatctgaaacgcatatgtgtactgtcaccgtggcatctgaaatacctgaaccttgggggcaatatcagtgagcttccaaggagtattgaagggctgcattgtttagagacactggatttaagggaaacagagataaagtttttgcccattgaaggtatcatgctgccccacttagctcacttgtttggaaagtttatgcttcacaaagatgatctgaacaatgtgaagaagataagtaaactattaaaattgttttcatcaaataaaagcaacttgcaaactttagcaggatttatcactgacgggaggaaaggatttcttcaacttattggtcatatgaaaaaactgaggaaggttaagatatggtgcaggcatgttgaaggtagcagtaattacattgctgatctttcaaaggccattcaggaatttaccaaggctcccattgacatggacagagtccgttctctctcaattgattccgaagaatactgtgaaaaattcctaagttcacttgatttggagccatgctctgaatattcgaaataccatctaagttcactaaagatacatggcaagttactccggttgcctccattttttacttctttgtcaggtctcattgatctgtgtattacaccagctactctgacacaagatcatctatcagcactgataaatctgaacagactgctgtacctcaaactgattgctgacaagctcgagaatttagagataaaacatggagcactactgagcctgagacgcctgtgctttgtggtgaaaagtgtggcgttagcgcagccaaaaatcgagcaaggagctctaccaaaccttgtttcacttcagctgctctgtcaaggactagttggtctttccggcatcgagatcagacacctgaaaaatctcaaggaagttacgattgactctggagtgactgcgcaaacaaggcaagattgggaacaagctgcaaagaaccaccctaacaggcctagagttttgttgctcggaaaggttgatccagtggaaagcgaggaaccgggaagaccctgtgccataagggggagggggaaaagttctataggccaagaaagttcagaagatggttcagattctagccttaagaggatgagacttgcagagccttcttcttcttcgcagcttcaggtgaccggccatccgcatccggtggtggtagcagccaccgaagcagcatcccagccttccatggcaaatctctag
More
|
|||||||
| Protein seq | MTLRTASTVSCTSSPASIIMVGCARWHMRSSSSTPYRAAHSLVGIRQPMEELLSLLDEVEGEPKQLRVTSIVGFSGLGKTTLAKAVYDSPHAKDKFCLRAWITADGSPETSNWMKEILRGVLQQVRPGDAMDVDGQHLEASLKEYLKDKRYLIIIDDIRMDQWRIISSAFENNGTGSRILLTTTIQSVTNRCSHGNGYVYQMNTLGKEDSEELAFSVLRSPELENHSESLLGKCDGLPLALVSVSDYLKSSTEATGELCAKLCRDLGSHLTGNHGHDNFSELRKVLLGNYDSFSGSALSCLLYLGIFPNNHPLRKKVLIRRWLAEGYARSDDPWRSEEDTADDNFSNLIDQNIIQPVDTRNNSEVKTCKTHGIMHEFLLNRSLAKRFITTSPHDPRVGINTTNSRHLSVDAAKQTKCMASDEELSRVRSLTIFGDAGDAISYLHKCNLIRVLDLQECSDLNDNHLKRICVLSPWHLKYLNLGGNISELPRSIEGLHCLETLDLRETEIKFLPIEGIMLPHLAHLFGKFMLHKDDLNNVKKISKLLKLFSSNKSNLQTLAGFITDGRKGFLQLIGHMKKLRKVKIWCRHVEGSSNYIADLSKAIQEFTKAPIDMDRVRSLSIDSEEYCEKFLSSLDLEPCSEYSKYHLSSLKIHGKLLRLPPFFTSLSGLIDLCITPATLTQDHLSALINLNRLLYLKLIADKLENLEIKHGALLSLRRLCFVVKSVALAQPKIEQGALPNLVSLQLLCQGLVGLSGIEIRHLKNLKEVTIDSGVTAQTRQDWEQAAKNHPNRPRVLLLGKVDPVESEEPGRPCAIRGRGKSSIGQESSEDGSDSSLKRMRLAEPSSSSQLQVTGHPHPVVVAATEAASQPSMANL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.169743 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0684700 | SBH | 1.002620 | 0.297249 | 0.828518 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45790 | SBH | 0.676354 | 0.199432 | 0.212752 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0684700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024260 | RBH | 0.068882 | 0.0 | 0.174172 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024220 | SBH | 0.072297 | 1.596504 | 0.651798 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023760 | RBH | 0.231569 | 0.000000 | 1.047969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023610 | SBH | 0.000000 | 0.114188 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024070 | RBH | 2.876732 | 0.000000 | 2.619991 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0437700 | RBH | 1.089035 | 1.6212905 | 2.2004365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024460 | RBH | 0.000000 | 0.055119 | 0.105740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0436200 | SBH | 0.041279 | 0.9578395 | 0.007942 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024310 | RBH | 0.160387 | 0.187248 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024340 | RBH | 0.281401 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023750 | SBH | 2.453158 | 14.942351 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023600 | RBH | 0.297426 | 0.0 | 0.815137 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023980 | RBH | 0.041282 | 0.953931 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023990 | RBH | 0.051287 | 0.970542 | 0.209478 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024180 | RBH | 0.612978 | 0.000000 | 1.371352 |
