Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0024310 | OGI:11081560 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:30263137-30266674 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acacaaaaaacagttcataatttgggtatctcgatatataggatacatcatatatgtaactatgcaaaaagtcaattctacaccttAatattgtaatccttattgaagtccatctgccgaaattgtataaatgtgctagagattaatttgccatggaaggctgggatgctgcttcggtggccgttaccaccaccggatgcggatggccgatcacctgaagccgtgaagaagaaggatctgaaagtctcatcctcttaaggctagaatcccgttcatcttctgaacttgcctggcctacacaaattctcctcttctccattggtcttcccggttcctcgctttccaccgaatgaacctctccgagcaacAaaactctaggcctgtttgggtggttctttgcagcctgttcccaatcttgccttgtttgcgcagtcactctagagtcaatcgtgacttccttgaggtgtttcaggtgtctgatctcgataccagaaagaccgactagtccttgacagagcagctggagtgaaacaaggtttggcatagctccttgctcgaactttggtagtgctgaagccgcatttttcaccacaaagcataggcgccgcaggctcagaaatgctcctagttttatctcgaaattctcgagcttgtctgcaaccaatttgaggtaaagcaggctgttcagattggtcagtgctgacagatgctcttgtgtcagtgtagctgatgaaatgcacagctcaatgagacctgacagcaaggtaacaaacaggggcaactggagtaagttgccatgtagcttcagcgacttcagagtatatttgtaatcttcagagcatggctccaaatgaatcgaactcaggaaaTtttcagagcattcttcggaatcaagtgagagaaaacggactcggtccatgtcaatgggagtcttggtaaattcctgaatggcctttgaaagatcagcaatgtaattactgctaccttcaacatgcttgcaccatatcttaaccttcctcagttttttcatatgaccaataagttgcagaaattcctttccttcttcagtgatAaatcctgctaaagttttcaagttgctcttatttgatgaaaagaatttttgtagtttactcatcttcttcgcattttttagatcatctttgtgaagcatgaactttccaaacaagtgagctaagtGgggcagcattatagcttcaatgggcaaaaacTtgatctctgttctccttaaatccagtgtctctaaacaatgcagcccttgaatactccttggaaactcattgatatagcccccaaggctcaggtatttcagatgccacagttcatatatgtgtttcagatgatcgtcattcaaaccattgcattcttgtagatCcaagactcgtagaagcttgcacttgcgaagacaagaaattgtatcacctgcatccccaaagattgtcagagatcggactcgagataattcttcgtcagatgccacgcattctgtctgtttagcagcatcgacagaaaggtggcgcgcattgctagtattgattccaactcttggatgatcatgcaatgatgtcccgatgaatctctgggccaaggacttgttcagcaaaaactcgtgcatgattccatgagttttgcacgtcttcacttcagaattgttcctcgtgtcaacaggctgaatgatattccggtcaataagctttctgaaattcttatctgcagtgtactcttcgctacgacgagggtcatcgctccgtgcatatccttctgctaaccaccgcctgattacaactttcttcTtgagaggacgattgtttgggaatataccaagatacagcaagcagctcagagtatagccagaaaaactgtcgtagttgtcaaggagcaccttcctgagttgtgcaaagctgtaatggccatcctctttcagatcagaaccaaggttgaggcacagctctgcacacagctctcctgtgggctcacttgagctcttcagataatcagagacactaaccagagccagaggaaggccatcacatttcgctaataatgatgctggaccttgCcccggttcaactgatctgagccctgaaaaagctagtttcttggagtcctcTttgccaagggtcttcatttggtacacataaccgttgccatggctgcacgtattagctacttgctgattatctgtcgtcactattatcctgctgcctgtaccattgtctggaaagatcgactctatgattctaagttgatccacatctatgtcatcgaTgacaatcaaatacctaacagacaaaaatgtacaaatgataagcaaataaatcacAaatcctgctaatgtaatagtcattagttagagatttgctccggtccaccgaaaagtacctcgagagactggtaccttacggtgcaaaatcgtttccgatcgttggatctaacaatgcctatcttgtctagctagatctAacgctcggaaacgatttggtaccgtgaggtaccgatacctcgtgttacttttcgcctaatacctcctaatactagtacttacagTaaaatcattgagAaaaaaaaaatgaggcgcaattacctcttgtccttgaggtactctctgagcgaggcttcgagatgctggccatccacatccatggcgtcaccgggacgcacttgccggagtacatcacgcaggatCcccctcatccagtcgctcgtctccggcgagccaacGgcggcgatccacgcacGgtggtagaatttctcctttgtgcgagggtcatcgtagaccgccttggcgagggtggtcttccccaatccaccgaaccccacgatggagatgaccctcacctgctccggctcgccctccacttcgtctagcagcgagaggacctcctccatgggctccccgatgcccaccggaggaccgcacgcggcgcgagccggagtcgatgacgacgacctcggctcgaatccactaggcggcggattcggattgatgatgttgctgatgacccgctgctgcgcttcgctgaggcgcctcctcagcttctggatctcttcactgaagctcgagcggctctggaccttcttgacctcgtgcttgactcggcaaaccaGggatgttcttccgctggggttgctgtggctgcaGgtgaggaggtgcgtgaagcggtcgacgcagtcctcgatgtcgtgctcgaggtcgagcatctcctcggcgtgcagccgcgcgacagccgtgcgggcgtgggcgtcgctcctccccatggagaggagctggtcgtccatggcggcggcgaccatgcggaactcctgctggagggaggcgacctcttgctcgagggccttgtgcttgttgtactccttgtccagcaccatgaacagcttccccatgaccgcctccAagaaagcgctcgccgccgcagacgccatggacgtcggcgtgcctctcgatacgaTtactttgctggatcagacagattggctgagggagaagcagctgcgagcaagcaccctccaagtcttccac
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| CDS seq | atggcgtctgcggcggcgagcgctttctTggaggcggtcatggggaagctgttcatggtgctggacaaggagtacaacaagcacaaggccctcgagcaagaggtcgcctccctccagcaggagttccgcatggtcgccgccgccatggacgaccagctcctctccatggggaggagcgacgcccacgcccgcacggctgtcgcgcggctgcacgccgaggagatgctcgacctcgagcacgacatcgaggactgcgtcgaccgcttcacgcacctcctcacCtgcagccacagcaaccccagcggaagaacatccCtggtttgccgagtcaagcacgaggtcaagaaggtccagagccgctcgagcttcagtgaagagatccagaagctgaggaggcgcctcagcgaagcgcagcagcgggtcatcagcaacatcatcaatccgaatccgccgcctagtggattcgagccgaggtcgtcgtcatcgactccggctcgcgccgcgtgcggtcctccggtgggcatcggggagcccatggaggaggtcctctcgctgctagacgaagtggagggcgagccggagcaggtgagggtcatctccatcgtggggttcggtggattggggaagaccaccctcgccaaggcggtctacgatgaccctcgcacaaaggagaaattctaccacCgtgcgtggatcgccgcCgttggctcgccggagacgagcgactggatgaggggGatcctgcgtgatgtactccggcaagtgcgtcccggtgacgccatggatgtggatggccagcatctcgaagcctcgctcagagagtacctcaaggacaagaggtatttgattgtcAtcgatgacatagatgtggatcaacttagaatcatagagtcgatctttccagacaatggtacaggcagcaggataatagtgacgacagataatcagcaagtagctaatacgtgcagccatggcaacggttatgtgtaccaaatgaagacccttggcaaAgaggactccaagaaactagctttttcagggctcagatcagttgaaccgggGcaaggtccagcatcattattagcgaaatgtgatggccttcctctggctctggttagtgtctctgattatctgaagagctcaagtgagcccacaggagagctgtgtgcagagctgtgcctcaaccttggttctgatctgaaagaggatggccattacagctttgcacaactcaggaaggtgctccttgacaactacgacagtttttctggctatactctgagctgcttgctgtatcttggtatattcccaaacaatcgtcctctcaAgaagaaagttgtaatcaggcggtggttagcagaaggatatgcacggagcgatgaccctcgtcgtagcgaagagtacactgcagataagaatttcagaaagcttattgaccggaatatcattcagcctgttgacacgaggaacaattctgaagtgaagacgtgcaaaactcatggaatcatgcacgagtttttgctgaacaagtccttggcccagagattcatcgggacatcattgcatgatcatccaagagttggaatcaatactagcaatgcgcgccacctttctgtcgatgctgctaaacagacagaatgcgtggcatctgacgaagaattatctcgagtccgatctctgacaatctttggggatgcaggtgatacaatttcttgtcttcgcaagtgcaagcttctacgagtcttgGatctacaagaatgcaatggtttgaatgacgatcatctgaaacacatatatgaactgtggcatctgaaatacctgagccttgggggctatatcaatgagtttccaaggagtattcaagggctgcattgtttagagacactggatttaaggagaacagagatcaAgtttttgcccattgaagctataatgctgcccCacttagctcacttgtttggaaagttcatgcttcacaaagatgatctaaaaaatgcgaagaagatgagtaaactacaaaaattcttttcatcaaataagagcaacttgaaaactttagcaggattTatcactgaagaaggaaaggaatttctgcaacttattggtcatatgaaaaaactgaggaaggttaagatatggtgcaagcatgttgaaggtagcagtaattacattgctgatctttcaaaggccattcaggaatttaccaagactcccattgacatggaccgagtccgttttctctcacttgattccgaagaatgctctgaaaAtttcctgagttcgattcatttggagccatgctctgaagattacaaatatactctgaagtcgctgaagctacatggcaacttactccagttgcccctgtttgttaccttgctgtcaggtctcattgagctgtgcatttcatcagctacactgacacaagagcatctgtcagcactgaccaatctgaacagcctgctttacctcaaattggttgcagacaagctcgagaatttcgagataaaactaggagcatttctgagcctgcggcgcctatgctttgtggtgaaaaatgcggcttcagcactaccaaagttcgagcaaggagctatgccaaaccttgtttcactccagctgctctgtcaaggactagtcggtctttctggtatcgagatcagacacctgaaacacctcaaggaagtcacgattgactctagagtgactgcgcaaacaaggcaagattgggaacaggctgcaaagaaccacccaaacaggcctagagtttTgttgctcggagaggttcattcggtggaaagcgaggaaccgggaagaccaatggagaagaggagaatttgtgtaggccaggcaagttcagaagatgaacgggattctagccttaagaggatgagactttcagatccttcttcttcacggcttcaggtgatcggccatccgcatccggtggtggtaacggccaccgaagcagcatcccagccttccatggcaaattaa
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| Protein seq | MASAAASAFLEAVMGKLFMVLDKEYNKHKALEQEVASLQQEFRMVAAAMDDQLLSMGRSDAHARTAVARLHAEEMLDLEHDIEDCVDRFTHLLTCSHSNPSGRTSLVCRVKHEVKKVQSRSSFSEEIQKLRRRLSEAQQRVISNIINPNPPPSGFEPRSSSSTPARAACGPPVGIGEPMEEVLSLLDEVEGEPEQVRVISIVGFGGLGKTTLAKAVYDDPRTKEKFYHRAWIAAVGSPETSDWMRGILRDVLRQVRPGDAMDVDGQHLEASLREYLKDKRYLIVIDDIDVDQLRIIESIFPDNGTGSRIIVTTDNQQVANTCSHGNGYVYQMKTLGKEDSKKLAFSGLRSVEPGQGPASLLAKCDGLPLALVSVSDYLKSSSEPTGELCAELCLNLGSDLKEDGHYSFAQLRKVLLDNYDSFSGYTLSCLLYLGIFPNNRPLKKKVVIRRWLAEGYARSDDPRRSEEYTADKNFRKLIDRNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLAQRFIGTSLHDHPRVGINTSNARHLSVDAAKQTECVASDEELSRVRSLTIFGDAGDTISCLRKCKLLRVLDLQECNGLNDDHLKHIYELWHLKYLSLGGYINEFPRSIQGLHCLETLDLRRTEIKFLPIEAIMLPHLAHLFGKFMLHKDDLKNAKKMSKLQKFFSSNKSNLKTLAGFITEEGKEFLQLIGHMKKLRKVKIWCKHVEGSSNYIADLSKAIQEFTKTPIDMDRVRFLSLDSEECSENFLSSIHLEPCSEDYKYTLKSLKLHGNLLQLPLFVTLLSGLIELCISSATLTQEHLSALTNLNSLLYLKLVADKLENFEIKLGAFLSLRRLCFVVKNAASALPKFEQGAMPNLVSLQLLCQGLVGLSGIEIRHLKHLKEVTIDSRVTAQTRQDWEQAAKNHPNRPRVLLLGEVHSVESEEPGRPMEKRRICVGQASSEDERDSSLKRMRLSDPSSSRLQVIGHPHPVVVTATEAASQPSMAN |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0024310 | OsLima_11g0024310.01 | Chr11 | 30263137 | 30266674 | - | NAM | ||
| CDS seq | atggcgtctgcggcggcgagcgctttctTggaggcggtcatggggaagctgttcatggtgctggacaaggagtacaacaagcacaaggccctcgagcaagaggtcgcctccctccagcaggagttccgcatggtcgccgccgccatggacgaccagctcctctccatggggaggagcgacgcccacgcccgcacggctgtcgcgcggctgcacgccgaggagatgctcgacctcgagcacgacatcgaggactgcgtcgaccgcttcacgcacctcctcacCtgcagccacagcaaccccagcggaagaacatccCtggtttgccgagtcaagcacgaggtcaagaaggtccagagccgctcgagcttcagtgaagagatccagaagctgaggaggcgcctcagcgaagcgcagcagcgggtcatcagcaacatcatcaatccgaatccgccgcctagtggattcgagccgaggtcgtcgtcatcgactccggctcgcgccgcgtgcggtcctccggtgggcatcggggagcccatggaggaggtcctctcgctgctagacgaagtggagggcgagccggagcaggtgagggtcatctccatcgtggggttcggtggattggggaagaccaccctcgccaaggcggtctacgatgaccctcgcacaaaggagaaattctaccacCgtgcgtggatcgccgcCgttggctcgccggagacgagcgactggatgaggggGatcctgcgtgatgtactccggcaagtgcgtcccggtgacgccatggatgtggatggccagcatctcgaagcctcgctcagagagtacctcaaggacaagaggtatttgattgtcAtcgatgacatagatgtggatcaacttagaatcatagagtcgatctttccagacaatggtacaggcagcaggataatagtgacgacagataatcagcaagtagctaatacgtgcagccatggcaacggttatgtgtaccaaatgaagacccttggcaaAgaggactccaagaaactagctttttcagggctcagatcagttgaaccgggGcaaggtccagcatcattattagcgaaatgtgatggccttcctctggctctggttagtgtctctgattatctgaagagctcaagtgagcccacaggagagctgtgtgcagagctgtgcctcaaccttggttctgatctgaaagaggatggccattacagctttgcacaactcaggaaggtgctccttgacaactacgacagtttttctggctatactctgagctgcttgctgtatcttggtatattcccaaacaatcgtcctctcaAgaagaaagttgtaatcaggcggtggttagcagaaggatatgcacggagcgatgaccctcgtcgtagcgaagagtacactgcagataagaatttcagaaagcttattgaccggaatatcattcagcctgttgacacgaggaacaattctgaagtgaagacgtgcaaaactcatggaatcatgcacgagtttttgctgaacaagtccttggcccagagattcatcgggacatcattgcatgatcatccaagagttggaatcaatactagcaatgcgcgccacctttctgtcgatgctgctaaacagacagaatgcgtggcatctgacgaagaattatctcgagtccgatctctgacaatctttggggatgcaggtgatacaatttcttgtcttcgcaagtgcaagcttctacgagtcttgGatctacaagaatgcaatggtttgaatgacgatcatctgaaacacatatatgaactgtggcatctgaaatacctgagccttgggggctatatcaatgagtttccaaggagtattcaagggctgcattgtttagagacactggatttaaggagaacagagatcaAgtttttgcccattgaagctataatgctgcccCacttagctcacttgtttggaaagttcatgcttcacaaagatgatctaaaaaatgcgaagaagatgagtaaactacaaaaattcttttcatcaaataagagcaacttgaaaactttagcaggattTatcactgaagaaggaaaggaatttctgcaacttattggtcatatgaaaaaactgaggaaggttaagatatggtgcaagcatgttgaaggtagcagtaattacattgctgatctttcaaaggccattcaggaatttaccaagactcccattgacatggaccgagtccgttttctctcacttgattccgaagaatgctctgaaaAtttcctgagttcgattcatttggagccatgctctgaagattacaaatatactctgaagtcgctgaagctacatggcaacttactccagttgcccctgtttgttaccttgctgtcaggtctcattgagctgtgcatttcatcagctacactgacacaagagcatctgtcagcactgaccaatctgaacagcctgctttacctcaaattggttgcagacaagctcgagaatttcgagataaaactaggagcatttctgagcctgcggcgcctatgctttgtggtgaaaaatgcggcttcagcactaccaaagttcgagcaaggagctatgccaaaccttgtttcactccagctgctctgtcaaggactagtcggtctttctggtatcgagatcagacacctgaaacacctcaaggaagtcacgattgactctagagtgactgcgcaaacaaggcaagattgggaacaggctgcaaagaaccacccaaacaggcctagagtttTgttgctcggagaggttcattcggtggaaagcgaggaaccgggaagaccaatggagaagaggagaatttgtgtaggccaggcaagttcagaagatgaacgggattctagccttaagaggatgagactttcagatccttcttcttcacggcttcaggtgatcggccatccgcatccggtggtggtaacggccaccgaagcagcatcccagccttccatggcaaattaa
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| Protein seq | MASAAASAFLEAVMGKLFMVLDKEYNKHKALEQEVASLQQEFRMVAAAMDDQLLSMGRSDAHARTAVARLHAEEMLDLEHDIEDCVDRFTHLLTCSHSNPSGRTSLVCRVKHEVKKVQSRSSFSEEIQKLRRRLSEAQQRVISNIINPNPPPSGFEPRSSSSTPARAACGPPVGIGEPMEEVLSLLDEVEGEPEQVRVISIVGFGGLGKTTLAKAVYDDPRTKEKFYHRAWIAAVGSPETSDWMRGILRDVLRQVRPGDAMDVDGQHLEASLREYLKDKRYLIVIDDIDVDQLRIIESIFPDNGTGSRIIVTTDNQQVANTCSHGNGYVYQMKTLGKEDSKKLAFSGLRSVEPGQGPASLLAKCDGLPLALVSVSDYLKSSSEPTGELCAELCLNLGSDLKEDGHYSFAQLRKVLLDNYDSFSGYTLSCLLYLGIFPNNRPLKKKVVIRRWLAEGYARSDDPRRSEEYTADKNFRKLIDRNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLAQRFIGTSLHDHPRVGINTSNARHLSVDAAKQTECVASDEELSRVRSLTIFGDAGDTISCLRKCKLLRVLDLQECNGLNDDHLKHIYELWHLKYLSLGGYINEFPRSIQGLHCLETLDLRRTEIKFLPIEAIMLPHLAHLFGKFMLHKDDLKNAKKMSKLQKFFSSNKSNLKTLAGFITEEGKEFLQLIGHMKKLRKVKIWCKHVEGSSNYIADLSKAIQEFTKTPIDMDRVRFLSLDSEECSENFLSSIHLEPCSEDYKYTLKSLKLHGNLLQLPLFVTLLSGLIELCISSATLTQEHLSALTNLNSLLYLKLVADKLENFEIKLGAFLSLRRLCFVVKNAASALPKFEQGAMPNLVSLQLLCQGLVGLSGIEIRHLKHLKEVTIDSRVTAQTRQDWEQAAKNHPNRPRVLLLGEVHSVESEEPGRPMEKRRICVGQASSEDERDSSLKRMRLSDPSSSRLQVIGHPHPVVVTATEAASQPSMAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.160387 | 0.187248 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0684700 | RBH | 1.002620 | 0.297249 | 0.828518 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45790 | RBH | 0.676354 | 0.199432 | 0.212752 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0684700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024280 | RBH | 0.259908 | 9.612663 | 1.746912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024220 | SBH | 0.072297 | 1.596504 | 0.651798 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023780 | RBH | 0.140382 | 2.393992 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023610 | SBH | 0.000000 | 0.114188 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024090 | RBH | 2.911472 | 10.617882 | 8.303026 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0438200 | RBH | 5.3839205 | 14.887633 | 4.746096 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024480 | RBH | 0.059799 | 0.099133 | 0.038086 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0436200 | RBH | 0.041279 | 0.9578395 | 0.007942 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024290 | RBH | 0.169743 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024360 | RBH | 0.380983 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023750 | SBH | 2.453158 | 14.942351 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024000 | RBH | 0.0 | 4.261011 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024010 | RBH | 0.096989 | 1.511279 | 0.270757 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024200 | RBH | 0.0 | 0.0 | 0.0 |
