Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0024220 | OGI:11081770 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:29632114-29635725 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacgacttggaggatgcaaggcttgcagagcagctgcccaagctgctgctgctcctcactctggagtccgacgatggagtctgcggcggcgagcgcattcttgaagacagtcatggggaggctgttcatggcgctggagaaggagtacaacaagcacagaggcctcgcgcaagaaagccactccctgcagcaagacctccgcatgatcgccgctgccatggacgaccatcagctttccatggggaagagcgacgccgccgcacgcacggccgtcgcgcggctgcacaccgaggagatgctcgacctcgcgcacgacatcgaggactgcgtcgaccgcttcttgcaccgcctcacctgcaaccaccacaaacgcggcggcgccggcgccggagcatcgctgctgcgccgggttacgcacgagctcagcaaggtcaagagccgctcgagcttcggcgacgagatccagaagctcaagaaacgcctcagggaagcgcaccagcgggtcctcaccatcaatccgccgcctattctcaccgccggcggcggccaacacactgcgtcgtcgtcgtccgcggcggtcgcgccgccgtgtcgggcagcgcgcagcccggtgggcatcggagaggacgtcgaagagctcctctcgatgctggacgaggtggagggcgagccggtgcagatgcgagtggtctccgtcgtggggttcggtggattggggaagacgaccctcgccaaggcggtctacgatgaccctcgagcaaaggacaaattccgccaccgtgcgtgggtcgtcgccggtggctcgccggagatcagggggatcctgcgtgatgtcctccagcaagtgcgtcccgacgatgccatggatgtggacggccagcgtcttgaagcttcgctcaaagactacctcaaggacaagaggtgactgcaaagaattccaatttttaggaacccaaataaatacttccatgaaattttaatgtattaattagctcaaatgatccaaatgatcattgacaaaaaaaaaattaatatttactgcacttctgctcctcatttctcaatttgattgtcatgcagcatatactgactattgtcaatttttacattagtagaatatgtgttttactaaattttgtttctcatttctcaattcggttattaggtatttaattgtgatagatgacattgggatggatcaatggagcatcatcagttcagcctttgaagacaatggaacaagcagtagaataatacttaccacaacaattcagtcagtagctaatatgtgcagccatggcagtggttatgtgtaccaaatgaacaccctgggtgaagacgactccaaaaaactagcttttccagggtgtagatcacctgaattggagcagggttcagcatcattgttagggaaatgtgatggtcttcctcttgctctggtcagtgtctctgattacctgaagagttcaagtgagcccacaggagagctttgtgctaaattatgccgtaatctgggctctcatctgaaagagaagcctggccatgacaacttttctgaactcaggaaggtgcttcttgacaactatgacagtttatctggctatgctctgagttgcttgctgtatctgggtatattcccaagcaatcgtcctctgaagaagaaagttgtaatcaggcggtggttagctgaaggatatgcaagaagtgactcacttcacagcgaagaagacattgctgatgagaatttcagtaagcttattgaccggcatatcattcagcctattgacacaagaaacaattctgaagtaaagacgtgcaaaactcacggaattatgcatgaatttttgctgaacaagtccttgacccagagattcatcgcgacatcatctcatgatcatccaagagttggaatcgatactaccaatgcacgccacctttctgtccatgctggcgaactgacagaatgtgtcgcatctgacgaagaattatctcgtgtccgatctctgacaatctttggggatgcaggggatgcaatttcatattttcgcaagtgcaagctgatacgagtcttggatctacaagaatggaacaatttagatgacgatcatctgaaacacatatgcaaactgtggcatctgaaatacctgagctttgggggcaatatcagtgagcttccaaggagtattgaagggttacactgtttagagacactggatttaaggaggaccaagataaagtttttgcccattgaaacaataatgcttccccacttagctcacctatttggaaagtttatgcttcataaagatgatctgaagaatgtgaacaagatgagtaaactacaaaagttcttctcttcaaataagagcaacttgcgaactttagcaggatttatcactgatcagggcaaaggatttctgcaacttgttcgtcaaatgaaaaaactgaggaaggttaagatatggtgcaagcatgttgcaggtagcagtaattacatcgctgatctttcacaggccattcaggaattcacgaggactccaattgacagggatagtgaccgttctctctcacttgattgtgaagaatgctctgaaaatttcctgagttcacttgatttggagccatgctctgaagattttaaataccatctaaggtcactaaagctacatggcaagttactccggttacctccatttgttgcttcgctgtcaggtctcactgagctgtgcatttcatcagctatactgacacaagatcatctgtcagcactaatcaaactgaacagacttctttacctcaaactgatcgcagacaagcttgaaaacattgacataaaaattggggcattcccaagcctgcgacgcttgtgctttgtcatgaaaagtgtgacttcagctctgccaacaattgagcaaggggctctaccgaacctcgtctcacttcagctgctctgtcaaggtctagttggtctttccggcatcgagatcagacacctgaaacatctcaaggaaatcaccatcgactctacagtgactgtacaaacaagacaagattgggaacaggcagcaaagaaccacccaaacaggccaagagttctgttgttcggaaaggttgatccgatggaaagcgaggagcctgaaaaaccttgtgccataggggaaaagaggaaactttctgtagcccagccaacaggttcagatggtggactggattctagccttaagaagatgagactttcagagccttcttcttctcggcttcaagtgatcgttcatccggtggtagtaacagccactgaggcagcaccccagcattcgtttgcgaatctctagcacatatattcaactgcagcagactgcaataaaatacaattcaaaatttgcaagaaaagcttggcaatctttatttctgttcagtacatctgttagacagttacatggtccagatttctgtctttccctacttgttgtgtacttcctacagttactgtttagctacattagtgtggaactttacgtgcctagagctttgaaaatgttttgttttcgttgaaatgagttgctgtctgtaagtctattggaaagaaatgaatgccaggaagtgaatttgtcc
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| CDS seq | atggagtctgcggcggcgagcgcattcttgaagacagtcatggggaggctgttcatggcgctggagaaggagtacaacaagcacagaggcctcgcgcaagaaagccactccctgcagcaagacctccgcatgatcgccgctgccatggacgaccatcagctttccatggggaagagcgacgccgccgcacgcacggccgtcgcgcggctgcacaccgaggagatgctcgacctcgcgcacgacatcgaggactgcgtcgaccgcttcttgcaccgcctcacctgcaaccaccacaaacgcggcggcgccggcgccggagcatcgctgctgcgccgggttacgcacgagctcagcaaggtcaagagccgctcgagcttcggcgacgagatccagaagctcaagaaacgcctcagggaagcgcaccagcgggtcctcaccatcaatccgccgcctattctcaccgccggcggcggccaacacactgcgtcgtcgtcgtccgcggcggtcgcgccgccgtgtcgggcagcgcgcagcccggtgggcatcggagaggacgtcgaagagctcctctcgatgctggacgaggtggagggcgagccggtgcagatgcgagtggtctccgtcgtggggttcggtggattggggaagacgaccctcgccaaggcggtctacgatgaccctcgagcaaaggacaaattccgccaccgtgcgtgggtcgtcgccggtggctcgccggagatcagggggatcctgcgtgatgtcctccagcaagtgcgtcccgacgatgccatggatgtggacggccagcgtcttgaagcttcgctcaaagactacctcaaggacaagaggtatttaattgtgatagatgacattgggatggatcaatggagcatcatcagttcagcctttgaagacaatggaacaagcagtagaataatacttaccacaacaattcagtcagtagctaatatgtgcagccatggcagtggttatgtgtaccaaatgaacaccctgggtgaagacgactccaaaaaactagcttttccagggtgtagatcacctgaattggagcagggttcagcatcattgttagggaaatgtgatggtcttcctcttgctctggtcagtgtctctgattacctgaagagttcaagtgagcccacaggagagctttgtgctaaattatgccgtaatctgggctctcatctgaaagagaagcctggccatgacaacttttctgaactcaggaaggtgcttcttgacaactatgacagtttatctggctatgctctgagttgcttgctgtatctgggtatattcccaagcaatcgtcctctgaagaagaaagttgtaatcaggcggtggttagctgaaggatatgcaagaagtgactcacttcacagcgaagaagacattgctgatgagaatttcagtaagcttattgaccggcatatcattcagcctattgacacaagaaacaattctgaagtaaagacgtgcaaaactcacggaattatgcatgaatttttgctgaacaagtccttgacccagagattcatcgcgacatcatctcatgatcatccaagagttggaatcgatactaccaatgcacgccacctttctgtccatgctggcgaactgacagaatgtgtcgcatctgacgaagaattatctcgtgtccgatctctgacaatctttggggatgcaggggatgcaatttcatattttcgcaagtgcaagctgatacgagtcttggatctacaagaatggaacaatttagatgacgatcatctgaaacacatatgcaaactgtggcatctgaaatacctgagctttgggggcaatatcagtgagcttccaaggagtattgaagggttacactgtttagagacactggatttaaggaggaccaagataaagtttttgcccattgaaacaataatgcttccccacttagctcacctatttggaaagtttatgcttcataaagatgatctgaagaatgtgaacaagatgagtaaactacaaaagttcttctcttcaaataagagcaacttgcgaactttagcaggatttatcactgatcagggcaaaggatttctgcaacttgttcgtcaaatgaaaaaactgaggaaggttaagatatggtgcaagcatgttgcaggtagcagtaattacatcgctgatctttcacaggccattcaggaattcacgaggactccaattgacagggatagtgaccgttctctctcacttgattgtgaagaatgctctgaaaatttcctgagttcacttgatttggagccatgctctgaagattttaaataccatctaaggtcactaaagctacatggcaagttactccggttacctccatttgttgcttcgctgtcaggtctcactgagctgtgcatttcatcagctatactgacacaagatcatctgtcagcactaatcaaactgaacagacttctttacctcaaactgatcgcagacaagcttgaaaacattgacataaaaattggggcattcccaagcctgcgacgcttgtgctttgtcatgaaaagtgtgacttcagctctgccaacaattgagcaaggggctctaccgaacctcgtctcacttcagctgctctgtcaaggtctagttggtctttccggcatcgagatcagacacctgaaacatctcaaggaaatcaccatcgactctacagtgactgtacaaacaagacaagattgggaacaggcagcaaagaaccacccaaacaggccaagagttctgttgttcggaaaggttgatccgatggaaagcgaggagcctgaaaaaccttgtgccataggggaaaagaggaaactttctgtagcccagccaacaggttcagatggtggactggattctagccttaagaagatgagactttcagagccttcttcttctcggcttcaagtgatcgttcatccggtggtagtaacagccactgaggcagcaccccagcattcgtttgcgaatctctag
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| Protein seq | MESAAASAFLKTVMGRLFMALEKEYNKHRGLAQESHSLQQDLRMIAAAMDDHQLSMGKSDAAARTAVARLHTEEMLDLAHDIEDCVDRFLHRLTCNHHKRGGAGAGASLLRRVTHELSKVKSRSSFGDEIQKLKKRLREAHQRVLTINPPPILTAGGGQHTASSSSAAVAPPCRAARSPVGIGEDVEELLSMLDEVEGEPVQMRVVSVVGFGGLGKTTLAKAVYDDPRAKDKFRHRAWVVAGGSPEIRGILRDVLQQVRPDDAMDVDGQRLEASLKDYLKDKRYLIVIDDIGMDQWSIISSAFEDNGTSSRIILTTTIQSVANMCSHGSGYVYQMNTLGEDDSKKLAFPGCRSPELEQGSASLLGKCDGLPLALVSVSDYLKSSSEPTGELCAKLCRNLGSHLKEKPGHDNFSELRKVLLDNYDSLSGYALSCLLYLGIFPSNRPLKKKVVIRRWLAEGYARSDSLHSEEDIADENFSKLIDRHIIQPIDTRNNSEVKTCKTHGIMHEFLLNKSLTQRFIATSSHDHPRVGIDTTNARHLSVHAGELTECVASDEELSRVRSLTIFGDAGDAISYFRKCKLIRVLDLQEWNNLDDDHLKHICKLWHLKYLSFGGNISELPRSIEGLHCLETLDLRRTKIKFLPIETIMLPHLAHLFGKFMLHKDDLKNVNKMSKLQKFFSSNKSNLRTLAGFITDQGKGFLQLVRQMKKLRKVKIWCKHVAGSSNYIADLSQAIQEFTRTPIDRDSDRSLSLDCEECSENFLSSLDLEPCSEDFKYHLRSLKLHGKLLRLPPFVASLSGLTELCISSAILTQDHLSALIKLNRLLYLKLIADKLENIDIKIGAFPSLRRLCFVMKSVTSALPTIEQGALPNLVSLQLLCQGLVGLSGIEIRHLKHLKEITIDSTVTVQTRQDWEQAAKNHPNRPRVLLFGKVDPMESEEPEKPCAIGEKRKLSVAQPTGSDGGLDSSLKKMRLSEPSSSRLQVIVHPVVVTATEAAPQHSFANL |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0024220 | OsKeNa_11g0024220.01 | Chr11 | 29632114 | 29635725 | + | NAM | ||
| CDS seq | atggagtctgcggcggcgagcgcattcttgaagacagtcatggggaggctgttcatggcgctggagaaggagtacaacaagcacagaggcctcgcgcaagaaagccactccctgcagcaagacctccgcatgatcgccgctgccatggacgaccatcagctttccatggggaagagcgacgccgccgcacgcacggccgtcgcgcggctgcacaccgaggagatgctcgacctcgcgcacgacatcgaggactgcgtcgaccgcttcttgcaccgcctcacctgcaaccaccacaaacgcggcggcgccggcgccggagcatcgctgctgcgccgggttacgcacgagctcagcaaggtcaagagccgctcgagcttcggcgacgagatccagaagctcaagaaacgcctcagggaagcgcaccagcgggtcctcaccatcaatccgccgcctattctcaccgccggcggcggccaacacactgcgtcgtcgtcgtccgcggcggtcgcgccgccgtgtcgggcagcgcgcagcccggtgggcatcggagaggacgtcgaagagctcctctcgatgctggacgaggtggagggcgagccggtgcagatgcgagtggtctccgtcgtggggttcggtggattggggaagacgaccctcgccaaggcggtctacgatgaccctcgagcaaaggacaaattccgccaccgtgcgtgggtcgtcgccggtggctcgccggagatcagggggatcctgcgtgatgtcctccagcaagtgcgtcccgacgatgccatggatgtggacggccagcgtcttgaagcttcgctcaaagactacctcaaggacaagaggtatttaattgtgatagatgacattgggatggatcaatggagcatcatcagttcagcctttgaagacaatggaacaagcagtagaataatacttaccacaacaattcagtcagtagctaatatgtgcagccatggcagtggttatgtgtaccaaatgaacaccctgggtgaagacgactccaaaaaactagcttttccagggtgtagatcacctgaattggagcagggttcagcatcattgttagggaaatgtgatggtcttcctcttgctctggtcagtgtctctgattacctgaagagttcaagtgagcccacaggagagctttgtgctaaattatgccgtaatctgggctctcatctgaaagagaagcctggccatgacaacttttctgaactcaggaaggtgcttcttgacaactatgacagtttatctggctatgctctgagttgcttgctgtatctgggtatattcccaagcaatcgtcctctgaagaagaaagttgtaatcaggcggtggttagctgaaggatatgcaagaagtgactcacttcacagcgaagaagacattgctgatgagaatttcagtaagcttattgaccggcatatcattcagcctattgacacaagaaacaattctgaagtaaagacgtgcaaaactcacggaattatgcatgaatttttgctgaacaagtccttgacccagagattcatcgcgacatcatctcatgatcatccaagagttggaatcgatactaccaatgcacgccacctttctgtccatgctggcgaactgacagaatgtgtcgcatctgacgaagaattatctcgtgtccgatctctgacaatctttggggatgcaggggatgcaatttcatattttcgcaagtgcaagctgatacgagtcttggatctacaagaatggaacaatttagatgacgatcatctgaaacacatatgcaaactgtggcatctgaaatacctgagctttgggggcaatatcagtgagcttccaaggagtattgaagggttacactgtttagagacactggatttaaggaggaccaagataaagtttttgcccattgaaacaataatgcttccccacttagctcacctatttggaaagtttatgcttcataaagatgatctgaagaatgtgaacaagatgagtaaactacaaaagttcttctcttcaaataagagcaacttgcgaactttagcaggatttatcactgatcagggcaaaggatttctgcaacttgttcgtcaaatgaaaaaactgaggaaggttaagatatggtgcaagcatgttgcaggtagcagtaattacatcgctgatctttcacaggccattcaggaattcacgaggactccaattgacagggatagtgaccgttctctctcacttgattgtgaagaatgctctgaaaatttcctgagttcacttgatttggagccatgctctgaagattttaaataccatctaaggtcactaaagctacatggcaagttactccggttacctccatttgttgcttcgctgtcaggtctcactgagctgtgcatttcatcagctatactgacacaagatcatctgtcagcactaatcaaactgaacagacttctttacctcaaactgatcgcagacaagcttgaaaacattgacataaaaattggggcattcccaagcctgcgacgcttgtgctttgtcatgaaaagtgtgacttcagctctgccaacaattgagcaaggggctctaccgaacctcgtctcacttcagctgctctgtcaaggtctagttggtctttccggcatcgagatcagacacctgaaacatctcaaggaaatcaccatcgactctacagtgactgtacaaacaagacaagattgggaacaggcagcaaagaaccacccaaacaggccaagagttctgttgttcggaaaggttgatccgatggaaagcgaggagcctgaaaaaccttgtgccataggggaaaagaggaaactttctgtagcccagccaacaggttcagatggtggactggattctagccttaagaagatgagactttcagagccttcttcttctcggcttcaagtgatcgttcatccggtggtagtaacagccactgaggcagcaccccagcattcgtttgcgaatctctag
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| Protein seq | MESAAASAFLKTVMGRLFMALEKEYNKHRGLAQESHSLQQDLRMIAAAMDDHQLSMGKSDAAARTAVARLHTEEMLDLAHDIEDCVDRFLHRLTCNHHKRGGAGAGASLLRRVTHELSKVKSRSSFGDEIQKLKKRLREAHQRVLTINPPPILTAGGGQHTASSSSAAVAPPCRAARSPVGIGEDVEELLSMLDEVEGEPVQMRVVSVVGFGGLGKTTLAKAVYDDPRAKDKFRHRAWVVAGGSPEIRGILRDVLQQVRPDDAMDVDGQRLEASLKDYLKDKRYLIVIDDIGMDQWSIISSAFEDNGTSSRIILTTTIQSVANMCSHGSGYVYQMNTLGEDDSKKLAFPGCRSPELEQGSASLLGKCDGLPLALVSVSDYLKSSSEPTGELCAKLCRNLGSHLKEKPGHDNFSELRKVLLDNYDSLSGYALSCLLYLGIFPSNRPLKKKVVIRRWLAEGYARSDSLHSEEDIADENFSKLIDRHIIQPIDTRNNSEVKTCKTHGIMHEFLLNKSLTQRFIATSSHDHPRVGIDTTNARHLSVHAGELTECVASDEELSRVRSLTIFGDAGDAISYFRKCKLIRVLDLQEWNNLDDDHLKHICKLWHLKYLSFGGNISELPRSIEGLHCLETLDLRRTKIKFLPIETIMLPHLAHLFGKFMLHKDDLKNVNKMSKLQKFFSSNKSNLRTLAGFITDQGKGFLQLVRQMKKLRKVKIWCKHVAGSSNYIADLSQAIQEFTRTPIDRDSDRSLSLDCEECSENFLSSLDLEPCSEDFKYHLRSLKLHGKLLRLPPFVASLSGLTELCISSAILTQDHLSALIKLNRLLYLKLIADKLENIDIKIGAFPSLRRLCFVMKSVTSALPTIEQGALPNLVSLQLLCQGLVGLSGIEIRHLKHLKEITIDSTVTVQTRQDWEQAAKNHPNRPRVLLFGKVDPMESEEPEKPCAIGEKRKLSVAQPTGSDGGLDSSLKKMRLSEPSSSRLQVIVHPVVVTATEAAPQHSFANL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.072297 | 1.596504 | 0.651798 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0686500 | RBH | 0.321495 | 0.197166 | 0.314310 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45930 | RBH | 0.217355 | 0.132576 | 0.080888 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0686500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024390 | RBH | 0.000000 | 6.231301 | 0.302483 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020960 | SBH | 0.078285 | 0.655335 | 0.437120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023800 | RBH | 1.866655 | 0.0 | 0.823084 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023610 | RBH | 0.000000 | 0.114188 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024170 | RBH | 0.413226 | 0.0 | 1.183689 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0439300 | RBH | 0.1263015 | 3.8706495 | 0.020055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0436400 | RBH | 0.371785 | 1.7885085 | 0.1623455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023750 | RBH | 2.453158 | 14.942351 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023640 | RBH | 0.058100 | 0.0 | 0.191546 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024040 | RBH | 0.108218 | 1.271005 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024050 | RBH | 0.177028 | 0.149203 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024260 | RBH | 0.000000 | 3.358457 | 1.793109 |
