Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_07g0026350 OGI:07067180 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr07:28379994-28381063
Gene Symbol SDR7-6, OsSDR7-6, OsSDR110C-MI4, SDR110C-MI4, TS2, _
DNA seq

tcaacgcatcctcatgtccgctgctttgtacgccgagtgtccgccgtcgacaacgaggttgtggccggtcacgtacttggcctcgtcggatgccaggtacaccgccgccgccgcgatgtgttccggcgccatgacgacgtcgtcattcgccatgatctgcttcagctcctcctcgctgcttgtccccaacatctcggcgaacgtgcgccttagcagcggcgtcctgacgccgcccggcgagatggcgttcacccgcacgccgtggcgcgccagcggctccgccgtggcgcgcacgatggcgatcgcggtggccttggagatggcgtacatggggatgctcgggacggagagcacccccgcggcgctggccgtgcagaggacgcagccggagcggcgcggcgccatgacgcgcgcggcgtgcttgatgccggcgagcaccgcgcgggcgttcaccgccatcacgcggtcgaagccggcgaggtccatggacgccaggtcgtcctgacgccgtacggtcccggagacgccggcattgttgaagaggacgtcgaggtggccgtggcgctccacggcgaggtcgacggccgcggcgacctgcgcctcgtcggcgacgtcgcagcgcgtgtacgcggcgtcccggccgagctccgccgccacggagcggccgaggtcgtcctggacgtcggcgatgatgaccttggcgccgttcttgatgaactctgcggctgtcgcgttgccgatgccgctggcaccgccggtgatgactgcaaccttgccggccaacctgcaagtgcatcaaacacataatcaacGTgagaacgagcagctcaaaataattaaccatttaattaattgattacttctgggagctGgaagaagcagtggagaagcgagagaagaaagctggagaagtggttgtccggccaagaactctgttcgtctccctgcgacaatgcacacatgcaatattcagagattcagtgagcttagatttgggagtggtaatgttgatcgaacattccAactcatttgaacctgagaatgagctgcgccgttgatctgaacatcat

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CDS seq

atgatgttcagatcaacggcgcagctcattctcagggagacgaacagagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgcttcttcCagctcccagaagttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaacgcgacagccgcagagttcatcaagaacggcgccaaggtcatcatcgccgacgtccaggacgacctcggccgctccgtggcggcggagctcggccgggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcgtctccgggaccgtacggcgtcaggacgacctggcgtccatggacctcgccggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcgccgcgggggtgctctccgtcccgagcatccccatgtacgccatctccaaggccaccgcgatcgccatcgtgcgcgccacggcggagccgctggcgcgccacggcgtgcgggtgaacgccatctcgccgggcggcgtcaggacgccgctgctaaggcgcacgttcgccgagatgttggggacaagcagcgaggaggagctgaagcagatcatggcgaatgacgacgtcgtcatggcgccggaacacatcgcggcggcggcggtgtacctggcatccgacgaggccaagtacgtgaccggccacaacctcgttgtcgacggcggacactcggcgtacaaagcagcggacatgaggatgcgttga

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Protein seq

MMFRSTAQLILRETNRVLGRTTTSPAFFSRFSTASSSSQKLAGKVAVITGGASGIGNATAAEFIKNGAKVIIADVQDDLGRSVAAELGRDAAYTRCDVADEAQVAAAVDLAVERHGHLDVLFNNAGVSGTVRRQDDLASMDLAGFDRVMAVNARAVLAGIKHAARVMAPRRSGCVLCTASAAGVLSVPSIPMYAISKATAIAIVRATAEPLARHGVRVNAISPGGVRTPLLRRTFAEMLGTSSEEELKQIMANDDVVMAPEHIAAAAVYLASDEAKYVTGHNLVVDGGHSAYKAADMRMR

Function Secoisolariciresinol dehydrogenase (Fragment) [UniProtKB/Swiss-Prot:Q94KL7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_07g0026350 OsLaMu_07g0026350.01 Chr07 28379994 28381063 - NAM
CDS seq

atgatgttcagatcaacggcgcagctcattctcagggagacgaacagagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgcttcttcCagctcccagaagttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaacgcgacagccgcagagttcatcaagaacggcgccaaggtcatcatcgccgacgtccaggacgacctcggccgctccgtggcggcggagctcggccgggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcgtctccgggaccgtacggcgtcaggacgacctggcgtccatggacctcgccggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcgccgcgggggtgctctccgtcccgagcatccccatgtacgccatctccaaggccaccgcgatcgccatcgtgcgcgccacggcggagccgctggcgcgccacggcgtgcgggtgaacgccatctcgccgggcggcgtcaggacgccgctgctaaggcgcacgttcgccgagatgttggggacaagcagcgaggaggagctgaagcagatcatggcgaatgacgacgtcgtcatggcgccggaacacatcgcggcggcggcggtgtacctggcatccgacgaggccaagtacgtgaccggccacaacctcgttgtcgacggcggacactcggcgtacaaagcagcggacatgaggatgcgttga

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Protein seq

MMFRSTAQLILRETNRVLGRTTTSPAFFSRFSTASSSSQKLAGKVAVITGGASGIGNATAAEFIKNGAKVIIADVQDDLGRSVAAELGRDAAYTRCDVADEAQVAAAVDLAVERHGHLDVLFNNAGVSGTVRRQDDLASMDLAGFDRVMAVNARAVLAGIKHAARVMAPRRSGCVLCTASAAGVLSVPSIPMYAISKATAIAIVRATAEPLARHGVRVNAISPGGVRTPLLRRTFAEMLGTSSEEELKQIMANDDVVMAPEHIAAAAVYLASDEAKYVTGHNLVVDGGHSAYKAADMRMR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0664150 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g46846 SBH 1.810007 2.002249 1.016401
Nipponbare | IRGSP 1.0 | RAP-db Os07g0664150 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0026790 SBH 0.0 0.0 0.658171
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0026790 SBH 0.043597 0.834109 1.177725
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0026650 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0026330 RBH 0.093968 0.064026 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0026640 SBH 0.0 0.263647 7.292994
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0454700 RBH 9.6727335 24.428213 2.8438605
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0027060 SBH 0.000000 0.586167 0.017986
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0468000 RBH 1.1362855 0.344752 0.024337
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0026340 SBH 0.0 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0026770 SBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0026440 SBH 0.0 1.074969 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0026850 SBH 0.000000 0.000000 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0026420 SBH 0.0 3.255497 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G026570 SBH 0.0 0.0 0.585537
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0026300 RBH 0.439231 16.591320 10.141115
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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