Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLaMu_07g0026350 | OGI:07067180 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:28379994-28381063 | ||||||||
Gene Symbol | SDR7-6, OsSDR7-6, OsSDR110C-MI4, SDR110C-MI4, TS2, _ | ||||||||||
DNA seq | tcaacgcatcctcatgtccgctgctttgtacgccgagtgtccgccgtcgacaacgaggttgtggccggtcacgtacttggcctcgtcggatgccaggtacaccgccgccgccgcgatgtgttccggcgccatgacgacgtcgtcattcgccatgatctgcttcagctcctcctcgctgcttgtccccaacatctcggcgaacgtgcgccttagcagcggcgtcctgacgccgcccggcgagatggcgttcacccgcacgccgtggcgcgccagcggctccgccgtggcgcgcacgatggcgatcgcggtggccttggagatggcgtacatggggatgctcgggacggagagcacccccgcggcgctggccgtgcagaggacgcagccggagcggcgcggcgccatgacgcgcgcggcgtgcttgatgccggcgagcaccgcgcgggcgttcaccgccatcacgcggtcgaagccggcgaggtccatggacgccaggtcgtcctgacgccgtacggtcccggagacgccggcattgttgaagaggacgtcgaggtggccgtggcgctccacggcgaggtcgacggccgcggcgacctgcgcctcgtcggcgacgtcgcagcgcgtgtacgcggcgtcccggccgagctccgccgccacggagcggccgaggtcgtcctggacgtcggcgatgatgaccttggcgccgttcttgatgaactctgcggctgtcgcgttgccgatgccgctggcaccgccggtgatgactgcaaccttgccggccaacctgcaagtgcatcaaacacataatcaacGTgagaacgagcagctcaaaataattaaccatttaattaattgattacttctgggagctGgaagaagcagtggagaagcgagagaagaaagctggagaagtggttgtccggccaagaactctgttcgtctccctgcgacaatgcacacatgcaatattcagagattcagtgagcttagatttgggagtggtaatgttgatcgaacattccAactcatttgaacctgagaatgagctgcgccgttgatctgaacatcat
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CDS seq | atgatgttcagatcaacggcgcagctcattctcagggagacgaacagagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgcttcttcCagctcccagaagttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaacgcgacagccgcagagttcatcaagaacggcgccaaggtcatcatcgccgacgtccaggacgacctcggccgctccgtggcggcggagctcggccgggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcgtctccgggaccgtacggcgtcaggacgacctggcgtccatggacctcgccggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcgccgcgggggtgctctccgtcccgagcatccccatgtacgccatctccaaggccaccgcgatcgccatcgtgcgcgccacggcggagccgctggcgcgccacggcgtgcgggtgaacgccatctcgccgggcggcgtcaggacgccgctgctaaggcgcacgttcgccgagatgttggggacaagcagcgaggaggagctgaagcagatcatggcgaatgacgacgtcgtcatggcgccggaacacatcgcggcggcggcggtgtacctggcatccgacgaggccaagtacgtgaccggccacaacctcgttgtcgacggcggacactcggcgtacaaagcagcggacatgaggatgcgttga
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Protein seq | MMFRSTAQLILRETNRVLGRTTTSPAFFSRFSTASSSSQKLAGKVAVITGGASGIGNATAAEFIKNGAKVIIADVQDDLGRSVAAELGRDAAYTRCDVADEAQVAAAVDLAVERHGHLDVLFNNAGVSGTVRRQDDLASMDLAGFDRVMAVNARAVLAGIKHAARVMAPRRSGCVLCTASAAGVLSVPSIPMYAISKATAIAIVRATAEPLARHGVRVNAISPGGVRTPLLRRTFAEMLGTSSEEELKQIMANDDVVMAPEHIAAAAVYLASDEAKYVTGHNLVVDGGHSAYKAADMRMR |
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Function | Secoisolariciresinol dehydrogenase (Fragment) [UniProtKB/Swiss-Prot:Q94KL7] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLaMu_07g0026350 | OsLaMu_07g0026350.01 | Chr07 | 28379994 | 28381063 | - | NAM | ||
CDS seq | atgatgttcagatcaacggcgcagctcattctcagggagacgaacagagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgcttcttcCagctcccagaagttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaacgcgacagccgcagagttcatcaagaacggcgccaaggtcatcatcgccgacgtccaggacgacctcggccgctccgtggcggcggagctcggccgggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcgtctccgggaccgtacggcgtcaggacgacctggcgtccatggacctcgccggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcgccgcgggggtgctctccgtcccgagcatccccatgtacgccatctccaaggccaccgcgatcgccatcgtgcgcgccacggcggagccgctggcgcgccacggcgtgcgggtgaacgccatctcgccgggcggcgtcaggacgccgctgctaaggcgcacgttcgccgagatgttggggacaagcagcgaggaggagctgaagcagatcatggcgaatgacgacgtcgtcatggcgccggaacacatcgcggcggcggcggtgtacctggcatccgacgaggccaagtacgtgaccggccacaacctcgttgtcgacggcggacactcggcgtacaaagcagcggacatgaggatgcgttga
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Protein seq | MMFRSTAQLILRETNRVLGRTTTSPAFFSRFSTASSSSQKLAGKVAVITGGASGIGNATAAEFIKNGAKVIIADVQDDLGRSVAAELGRDAAYTRCDVADEAQVAAAVDLAVERHGHLDVLFNNAGVSGTVRRQDDLASMDLAGFDRVMAVNARAVLAGIKHAARVMAPRRSGCVLCTASAAGVLSVPSIPMYAISKATAIAIVRATAEPLARHGVRVNAISPGGVRTPLLRRTFAEMLGTSSEEELKQIMANDDVVMAPEHIAAAAVYLASDEAKYVTGHNLVVDGGHSAYKAADMRMR
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0664150 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46846 | SBH | 1.810007 | 2.002249 | 1.016401 |
Nipponbare | IRGSP 1.0 | RAP-db | Os07g0664150 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026790 | SBH | 0.0 | 0.0 | 0.658171 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026790 | SBH | 0.043597 | 0.834109 | 1.177725 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026650 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026330 | RBH | 0.093968 | 0.064026 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026640 | SBH | 0.0 | 0.263647 | 7.292994 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0454700 | RBH | 9.6727335 | 24.428213 | 2.8438605 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027060 | SBH | 0.000000 | 0.586167 | 0.017986 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0468000 | RBH | 1.1362855 | 0.344752 | 0.024337 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026340 | SBH | 0.0 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026770 | SBH | 0.0 | 0.000000 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026440 | SBH | 0.0 | 1.074969 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026850 | SBH | 0.000000 | 0.000000 | 0.000000 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026420 | SBH | 0.0 | 3.255497 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026570 | SBH | 0.0 | 0.0 | 0.585537 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026300 | RBH | 0.439231 | 16.591320 | 10.141115 |