Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0026340 | OGI:07067280 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:28888213-28894449 | ||||||||
| Gene Symbol | OsSDR110C-MI3, SDR110C-MI3, - | ||||||||||
| DNA seq | tcagtgtgatttttgggtttgtaggttggccgggaaggtcgccgtcatcaccggcggcgccagcggcatcggcagggcgacggcggaggagttcgtcaggaatggtgccaaggtcatcctcgccgatgtgcaggacgacctgggacacgccgtcgccgcggagctgggcgcggacgcggcgtcgtacctcggcgctgcgacgtcaccgacgaggcgcaggtcgcggcggccgtggacctcgccgtggcgcggcacgggcgtctcgacgtcgtcttcaacaacgccggcatccccggcgacctcatgccgaccccggtgagcgcgctggacctcgccgacttcgatcgcgtgatggcggtcaacacccgggcggtggtggcgggcgtcaagcacgccgcgcgcgtcatggtgccgcgccgccgcggcagcatcatctgcacggcgagcacggcgggcgtgatcggcggggcgatcccgcactacagcgtgtccaaggccatggtgctcggcctggttcgcgccgtggcgggcgagatggcgcgctccggcgtacgcgtgaacgccatctcccccaactacatctggacgcccatggcgatggtctccatgaccgcgctatacccagaccggagcaccgacgagcaccgccggatcgtggaggacataaacgagatggaaggcgcgacgctggaggccgaggacgtggcgagggcggcggtgttcctcgcctccgacgaggccaagtacgtgaacgggcacaacctcgtcgtcgacggcgggtacacagtcagcaaggcgcccaacatgccagcccctgatggccattgacaacgaatcaaatggtggtggtgtgtgtgcactgtgtgtactgtagccgtcatgttcgtgtcatgactacattggcatttatgtttagaagaaaaaaaaaagttagatcactatcactccacggcgacgccggcgtgaatgaatttgctgaaactatactacctccgtttcacaatgtaagtcattctagcatttctcatattcatattgatgttaatgaatctagacatacatcaatatgaatgtgggaaatgctagaatgacttatattgtgaaacggaagaagtacctagtacctattgacagctactgtttgatgaatacttcttccgtgtcaaaatacggtaacctaatggatatatcctaatatctagtaagactaggatgtatactaggctgctatattttgagacagtgagagtaacaatattggtggtgtgcattgtacgtatagttggctaaaagaccgtagatccgacggcctagcccatggcacgaggttttggcccaacccaaaagcggtatggcccgacttttggatcatgcctgggcctctgccttggcacgatgggccgactcggcacggtctgatcagggagttaaatagacttattccaaccatataaggcactgcccaaaaagatgagagatgcaaaatagacttattccagccatattagagattgcccaaagagatgagggaggcaaaataaactttttccaaggaggagcacagtaggctttcgtacctttgggccatgctgacacgtcccgagtcttattggggcgtgcctgagccgacggtgcagcaagtgggcaggcccggcccggcccagcgtgaaggtcgggccgttattttatttgatgttgttttaattttatgtgatgtcatatagaatatagatggatagagtggtctgtgtgtattttggtgcatggtatcgtgacaattgagctggtagtcttttgcttgtaggacttttgaggatagtttttttaagggaaattttatggcccttgagaaaataccctaaggtacttaaattttacactagtttgaggtaccaagttttacactagaaaacgtgacatctcccgttacttttttaaggataataaaattatctatttttaattggtttgataaacttttctcttgtataaggccttgttcgattaattttttaataggaaaggattggaggagattgaggggggaatggcattgaataaatccccctcagtaaaggattaaacgaacaactcctaaaatatgtgttaggatagaggcttgagttggcagctgttcaaggtatttacaatattgaagctagatgtacgtcgaataagcatatgctagacttgaacgggaagatggaagcatattttgatatagatatgggtcacaattcaagtccttttgaagtggttgcttcgaaagtactccctccatttcaggttataagacgttttgactaagtttataggcaaatataataatatttataatactaaattagtttcatcaaatcaataattgaatatattttcataataaatttgtcttgagttgaaaatgttactactttttaaacaaacttggtagtttgactttgactaaagtcaacatcttataacttgaaacagagggactacatgagatggaatacaaggaggtatcagtctctttgcgtagattccaccctcttatatcatgaaccggtgaacgaagtggttgacgatgaaactaatatgaaaagaatgtgcgcgtgttatgattgtctatatttacgctgtatttctaaaaaaaaaagtgatacgaagagtgactttgttaagctgatggcaagtggtccaggcgaatcgatcgatgggtgttgttacatcactgtagggatggaggacaatgatggatgaggacgttgtgccaggtcattcttctttttcccccaaaatttattcctttttaattacacaggccagtcgtcttcttcgtcatcctcgatcagcgagagaatataatttgcttctctctctctctcgctcgcggttgctcaggcaagctgagagcttaattcagaggcatcatgttcacagcgatgcatcgcatcctcagcaggtatggcggattcttgtagctgttctccgattcggatttcagaggagcagccagctcagtgtgacagtgtgaagcttactgtggaaacaaatggccaaataattggggttggttgttgtaatgcagggggaggaggacacctgcagcttcgtcttcctccatcactgccttcgccgccgcctccgattcgcagaggtgatttgatcgattcatcttggagttgcattgagccattggttggggacgctgatttcatcttcttgattgcgaaccggggatggatgtgaatgtgatttgcgggtctgtaggttggccgggaaggtcgccgtcatcaccggcggcgccagcggcatcggcagggcgacggcggaggagttcgtcaggaatggcgccaaggtcatcctcgccgatgtgcaggacgacctgggacacgccgtcgccgcggagctcggcgcggacgcggcgtcgtacgcgcgctgcgacgtcaccgacgaggcgcaggtcgcggccgccgtggacctcgccgtggcacggcacgggcgtctcgacgtcgtcttcaacaacgccggcatccccggtgacctcacgccgacccccgtgggcgcgctggacctcgctgacttcgaccgcgtgatggcggtgaacaccagggcggtggtggcgggcgtcaagcacgccgcgcgcgtcatggtgccgcgccgccgcggcagcatcatcttgttaaggtcctggctgggctgccaaatgggccagcccatcaactctcctaatgttggcccaagccagtccaaggtgaagctacaaaacaacaggacaactcttaccaggggaatcgaacagatcaggaatcggcggcttcggccacggcggcggcggcggcggcggcttggttcggttgaacctcgtcgatctctatccttctctctctccatggtcctcctcactgccacttctagaagcatcctctacttcttctccttcaattcctcttctattttcctgagattgtattgaattggattgttcttgagattaccgagtttggaaggagagggttgttaacacatctgcacggcgagcacggcgggggtgatcggtggcgtggcggtcccgcactacagcgtgtccaaggccgcggtgctcgggctggtgcgcgccgtggcgggcgagatggcgcgctccggcgtgcgcgtgaacgccatctcccccaactacatctggacgcccatggcggcggtcgcctacgcaaggtggtaccccagccggagcgccgacgagcaccgccggatcgtggagaatgacataaacgagatggatggcgtgacactggaggccgaggacgtggcaagggcggcggtgttcctcgcctccgacgaggctaagtacgtgaacgggcacaacctcgttgtcgacggcgggtacaccgtcggcaaggtgcccaacatgccggtcccagatggccattgataatgtaccacggttgatgaataataatgttggtgatgtgtacactattcgtagtattaactctgtttcatactgtaagttcgtttggactctttttaatcaaacttctttatgtttaaataaatttataaaagaaaattagcaacatttacaccattaaattagtttcattaaataaaaacattaaatatattttgataatatatatattttgtattaaaaatattgctacatttttctataaattttgtcaaatttaaaaattttgaatagaaaaaaatcaaagcgacttatataatactccatatgaagcagagggagtatattgtgccaatcagattcgtgttatgattacaatgacatttatgtttagaagaaaaaaaggggctggctataatatcatgtgacataaaattcactattcgaacgaaaggctatagttcggaaaccatgtaatacgcgttagaagcaccgaacattaatatagttttttaagttcgtaacactataacctcaagttaatagtatataaagttaactgttgactattagcttacattaaaactaacatctataataagttaacaataaagttgactatattttttctctcgtatcactataaatatcttgaaacatgattttctttatatctttcttctacaaacttatagcccattaattattattacattgctttaatgtagcttcttgcataactgcgcgatgaaattcggctagttccaagacggttcaacgcatcctcatgtccgctgctttgtacgccgagtgtccgccgtcgacaacgaggttgtggccggtcacgtacttggcctcgtcggatgccaggtacaccgccgccgccgcgatgtgttccggcgccatgacgacgtcgtcattcgccatgatctgcttcagctcctcctcgctgcttgtccccaacatctcggcgaacgtgcgccttagcagcggcgtcctgacgccgcccggcgagatggcgttcacccgcacgccgtggcgcgccagcggctccgccgtggcgcgcacgatggcgatcgcggtggccttggagatggcgtacatggggatgctcgggacggagagcacccccgcggcgctggccgtgcagaggacgcagccggagcggcgcggcgccatgacgcgcgcggcgtgcttgatgccggcgagcaccgcgcgggcgttcaccgccatcacgcggtcgaagccggcgaggtccatggacgccaggtcgtcctgacgccgtacggtcccggagacgccggcattgttgaagaggacgtcgaggtggccgtggcgctccacggcgaggtcgacggccgcggcgacctgcgcctcgtcggcgacgtcgcagcgcgtgtacgcggcgtcccggccgagctccgccgccacggagcggccgaggtcgtcctggacgtcggcgatgatgaccttggcgccgttcttgatgaactctgcggctgtcgcgttgccgatgccgctggcaccgccggtgatgactgcaaccttgccggccaacctgcaagtgcatcaaacacataatcaacgtgagaacgagcagctcaaaataattaaccatttaattaattgattacttctgggagctggaagaagcagtggagaagcgagagaagaaagctggagaagtggttgtccggccaagaactctgttcgtctccctgcgacaatgcacacatgcaatattcagagattcagtgagcttagatttgggagtggtaatgttgatcgaacattccaactcatttgaacctgagaatgagctgcgccgttgatctgaacatcat
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| CDS seq | atgatgttcagatcaacggcgcagctcattctcagggagacgaacagagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgcttcttccagctcccagaagttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaacgcgacagccgcagagttcatcaagaacggcgccaaggtcatcatcgccgacgtccaggacgacctcggccgctccgtggcggcggagctcggccgggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcgtctccgggaccgtacggcgtcaggacgacctggcgtccatggacctcgccggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcgccgcgggggtgctctccgtcccgagcatccccatgtacgccatctccaaggccaccgcgatcgccatcgtgcgcgccacggcggagccgctggcgcgccacggcgtgcgggtgaacgccatctcgccgggcggcgtcaggacgccgctgctaaggcgcacgttcgccgagatgttggggacaagcagcgaggaggagctgaagcagatcatggcgaatgacgacgtcgtcatggcgccggaacacatcgcggcggcggcggtgtacctggcatccgacgaggccaagtacgtgaccggccacaacctcgttgtcgacggcggacactcggcgtacaaagcagcggacatgaggatgctgcgggaccgccacgccaccgatcacccccgccgtgctcgccgtgcagatcccagccaggaccttaacaagatgatgctgccgcggcggcgcggcaccatgacgcgcgcggcgtgcttgacgcccgccaccaccgccctggtgttcaccgccatcacgcggtcgaagtcagcgaggtccagcgcgcccacgggggtcggcgtgaggtcaccggggatgccggcgttgttgaagacgacgtcgagacgcccgtgccgtgccacggcgaggtccacggcggccgcgacctgcgcctcgtcggtgacgtcgcagcgcgcgtacgacgccgcgtccgcgccgagctccgcggcgacggcgtgtcccaggtcgtcctgcacatcggcgaggatgaccttggcgccattcctgacgaactcctccgccgtcgccctgccgatgccgctggcgccgccggtgatgacggcgaccttcccggccaacctacagacccgcaaatcacattcacatccatccccgaccatcgccatgggcgtccagatgtag
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| Protein seq | MMFRSTAQLILRETNRVLGRTTTSPAFFSRFSTASSSSQKLAGKVAVITGGASGIGNATAAEFIKNGAKVIIADVQDDLGRSVAAELGRDAAYTRCDVADEAQVAAAVDLAVERHGHLDVLFNNAGVSGTVRRQDDLASMDLAGFDRVMAVNARAVLAGIKHAARVMAPRRSGCVLCTASAAGVLSVPSIPMYAISKATAIAIVRATAEPLARHGVRVNAISPGGVRTPLLRRTFAEMLGTSSEEELKQIMANDDVVMAPEHIAAAAVYLASDEAKYVTGHNLVVDGGHSAYKAADMRMLRDRHATDHPRRARRADPSQDLNKMMLPRRRGTMTRAACLTPATTALVFTAITRSKSARSSAPTGVGVRSPGMPALLKTTSRRPCRATARSTAAATCASSVTSQRAYDAASAPSSAATACPRSSCTSARMTLAPFLTNSSAVALPMPLAPPVMTATFPANLQTRKSHSHPSPTIAMGVQM |
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| Function | Short-chain dehydrogenase reductase 5 [UniProtKB/Swiss-Prot:F4J300] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0026340 | OsLima_07g0026340.02 | Chr07 | 28888213 | 28888778 | - | NAM | ||
| CDS seq | atggcgttcacgccgcgccatctcgcccgccacggcgcgaaccaggccgagcaccatggccttggacacgctgtagtgcgggatcgccccgccgatcacgcccgccgtgctcgccgtgcagatgatgctgccgcggcggcgcggcaccatgacgcgcgcggcgtgcttgacgcccgccaccaccgcccgggtgttgaccgccatcacgcgatcgaagtcggcgaggtccagcgcgctcaccggggtcggcatgaggtcgccggggatgccggcgttgttgaagacgacgtcgagacgcccgtgccgcgccacggcgaggtccacggccgccgcgacctgcgcctcgtcggtgacgtcgcagcgccgaggtacgacgccgcgtccgcgcccagctccgcggcgacggcgtgtcccaggtcgtcctgcacatcggcgaggatgaccttggcaccattcctgacgaactcctccgccgtcgccctgccgatgccgctggcgccgccggtgatgacggcgaccttcccggccaacctacaaacccaaaaatcacactga
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| Protein seq | MAFTPRHLARHGANQAEHHGLGHAVVRDRPADHARRARRADDAAAAARHHDARGVLDARHHRPGVDRHHAIEVGEVQRAHRGRHEVAGDAGVVEDDVETPVPRHGEVHGRRDLRLVGDVAAPRYDAASAPSSAATACPRSSCTSARMTLAPFLTNSSAVALPMPLAPPVMTATFPANLQTQKSH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0026340 | OsLima_07g0026340.01 | Chr07 | 28888788 | 28894449 | - | NAM | ||
| CDS seq | atgatgttcagatcaacggcgcagctcattctcagggagacgaacagagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgcttcttccagctcccagaagttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaacgcgacagccgcagagttcatcaagaacggcgccaaggtcatcatcgccgacgtccaggacgacctcggccgctccgtggcggcggagctcggccgggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcgtctccgggaccgtacggcgtcaggacgacctggcgtccatggacctcgccggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcgccgcgggggtgctctccgtcccgagcatccccatgtacgccatctccaaggccaccgcgatcgccatcgtgcgcgccacggcggagccgctggcgcgccacggcgtgcgggtgaacgccatctcgccgggcggcgtcaggacgccgctgctaaggcgcacgttcgccgagatgttggggacaagcagcgaggaggagctgaagcagatcatggcgaatgacgacgtcgtcatggcgccggaacacatcgcggcggcggcggtgtacctggcatccgacgaggccaagtacgtgaccggccacaacctcgttgtcgacggcggacactcggcgtacaaagcagcggacatgaggatgctgcgggaccgccacgccaccgatcacccccgccgtgctcgccgtgcagatcccagccaggaccttaacaagatgatgctgccgcggcggcgcggcaccatgacgcgcgcggcgtgcttgacgcccgccaccaccgccctggtgttcaccgccatcacgcggtcgaagtcagcgaggtccagcgcgcccacgggggtcggcgtgaggtcaccggggatgccggcgttgttgaagacgacgtcgagacgcccgtgccgtgccacggcgaggtccacggcggccgcgacctgcgcctcgtcggtgacgtcgcagcgcgcgtacgacgccgcgtccgcgccgagctccgcggcgacggcgtgtcccaggtcgtcctgcacatcggcgaggatgaccttggcgccattcctgacgaactcctccgccgtcgccctgccgatgccgctggcgccgccggtgatgacggcgaccttcccggccaacctacagacccgcaaatcacattcacatccatccccgaccatcgccatgggcgtccagatgtag
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| Protein seq | MMFRSTAQLILRETNRVLGRTTTSPAFFSRFSTASSSSQKLAGKVAVITGGASGIGNATAAEFIKNGAKVIIADVQDDLGRSVAAELGRDAAYTRCDVADEAQVAAAVDLAVERHGHLDVLFNNAGVSGTVRRQDDLASMDLAGFDRVMAVNARAVLAGIKHAARVMAPRRSGCVLCTASAAGVLSVPSIPMYAISKATAIAIVRATAEPLARHGVRVNAISPGGVRTPLLRRTFAEMLGTSSEEELKQIMANDDVVMAPEHIAAAAVYLASDEAKYVTGHNLVVDGGHSAYKAADMRMLRDRHATDHPRRARRADPSQDLNKMMLPRRRGTMTRAACLTPATTALVFTAITRSKSARSSAPTGVGVRSPGMPALLKTTSRRPCRATARSTAAATCASSVTSQRAYDAASAPSSAATACPRSSCTSARMTLAPFLTNSSAVALPMPLAPPVMTATFPANLQTRKSHSHPSPTIAMGVQM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0663650 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46846 | SBH | 1.810007 | 2.002249 | 1.016401 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0663650 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026790 | SBH | 0.0 | 0.0 | 0.658171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026790 | SBH | 0.043597 | 0.834109 | 1.177725 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026650 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026390 | SBH | 0.000000 | 0.104732 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026570 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0454700 | SBH | 9.6727335 | 24.428213 | 2.8438605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027070 | SBH | 0.000000 | 0.000000 | 0.066599 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0467500 | SBH | 0.2203465 | 0 | 0.5151205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026330 | SBH | 0.0 | 0.072331 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026770 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026450 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026860 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026350 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026530 | SBH | 0.0 | 0.438149 | 2.376935 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026300 | SBH | 0.439231 | 16.591320 | 10.141115 |
