Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0026330 | OGI:07067180 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:27566503-27575640 | ||||||||
| Gene Symbol | OsSDR110C-MI2, SDR110C-MI2, TS2, RMP8 | ||||||||||
| DNA seq | atgttcagagcattgcagatcgtcctcaggtatagttttacattacatgatcctagctgcaaattaaagcttcatcactgtcaagatcttcttggattaacaacaagaacagcttaattagttagatgtgtttttgtgcaattttatatacttaatcacttctgtgttgggtgcaggggtaagagccgaggatttgtcagtcacttctcctccacggcttcaaattctgaaaggttgcaaactttcagcatcaatttatgtttgattttattttttacacttttgtgtttggttgcttgcgagttgtgaatcatggagaagtattgcgccgtgacgtttgatttttgtattttttttggtttgcaggttggctgggaaggtggcggtgatcaccggcgcggcgagcggcatcggcaaggcgaccgcggcggagttcgtcaggaatggcgccaaggtcatcctcgccgacgtccaggacgacgtcggccgcgccgtcgcctcggagctcggcccggacgcggcgtcctacacccgctgcgacgtcaccgaagaggcgcaggtcgcggcggccgtggacctcgccgtggcgcggcacgggcagctcgacgtcatggtcaacaacgccggcatcgtgggctccctggcgcgccccccgctcggcgccctcgacctcgccgacttcgacgccgtcatggcggtgaacgcgcggggcgtcctcgcgggcgtcaagcacgccgcgcgcgtcatggcgccgcgccgccgcggtagcatcatctgcgtggcgagcgtcgcaggggtgctcggcagcgtgacgccgcacccgtacagcgtgtccaaggccgccgtgctcggcgcggtccgcgccgccgccggcgagatggcgcgctccggcgtgcgcgtgaacgccatctcccccaactacatcccgacgccgctggtgatgcgcatcatggcggagtggtaccccggggcgagcgccgacgagcaccgccgcgtcgtggagagggagatcaacgagatggagggcgcgacgctggagccggaggacatcgcgagggcggcggtgtacctggcctccgacgaggccaggtacgtgaacgggcacaacctcgtcgtcgacggcgggtacaccgtcggcaaggcgcccaacctgccggcgccgccgcaataatcaacacgagaatcggcgaacgaataatagcaacaattatgcattattacagtattactccgctaatgaacaaatcatatgcttctcgttgtttttgcatcgatcaaatgcattgttgtgtttgggatcaaaggccttttgtttggagtggatgaggttttgggctttttgcccacgacaaactatgtcaagagatgctgctccaagtcttcttctttcttcgtttaattaaatttcacaaaacgaaagatatatcgatcaaattatcataaaactatatatttaaaataatgtttcagaaaactacagagttagcactaaatttatcataaaattacaaatttaaggtgaaatattacaaaactatatatttattaataaagttatcacaaaacaacacatttagctttgtaatacttttattattaaatttatagtttggtgatacttagtcttaaacttatagttttgtaataaatttattgttaaatatgtagttttgtgatatatcaccttaaatataaatttttatgataatttgatcaaaatacctatattttgtgattttttttcttgaaaggattaaagaaagaaatgctattccaagtttgcgacgcgtcggtcacaagatccaaagctcgcatgcaaatgcagtccaacaaggtaagctaagctagctagtgggaaactattttaaatgtccactcatttattacatgtcatctaaatgattataaaaaaattaaaaaaaatgaataagatagatcaatatgtaatatgtaatgtatcaatccacaaacatgcatgttaatattcaacttctacagattgtaacaaaaataataaacaaaactcaaattactatatgtatatttacagttaaatttgttatttttgttacaacttgtagaagttgaattttaacttgtatgtttgtggagtgatatattgcatattgatctatcttgttaatttttttgaaaatttttcgtaaccatctagttgatatataataaacgggtggacatccactcgagctattagaatccatctccgctagctagctccaaactctgtacagtgacgcgcgaagtgagaataattcaactggttaggatttaggaatcagtctacccaaatttaaattctaaattttacatgggtgctcgtatttaagactaattattacctggatttaaatcctaaatttgacatagatgctcacatttgtgacttattacAaaaaatccgtatattctattacacaactattattttattaaaatagatgggtaccccatgcgttgctgtcgaagaattatttggtaaaatagtggatatgagttatgaaattttatttcttacttactatatcatttctttaatgtgcttatatatttagcacttatctaaagattataaatgactgtgttgttactatcttttggggagaagagatgcaattgcgtcgttgataaaactatgcaatgacgaaaaacaattaagatgatgtggcttcattagagaggagagaattagcattatctatagttggtgcagataaactttatagatatataggattcacacacgtaccagtacactataaggctgtgtttagtttcaggggatgggagctaatccctcccacacggaaaaaggagcgatccattagcgcgtgattaattaagtacagaaaaactaggaaacaggattcggttcaatgggataacctacatacatgcagtggcttacatggagagatcaacctagctctatacaaaaggcaggggcccacatgcatgtcctatccttttttctcatccattcatgcagcttatgggcccatgtgcatgtgcgtacatgcttaacgttttgctactgcatgtacggtgcccacatgactttggcaaagaggtcaatcaattccatgcagttattaatcatcaatagtgaatatacttattatatcactagtacagaaatataatccctcatacctaatatgtattataactaaaaaaatatagtgcaaaaaatggttccttggatccgatacctatatatatcgtaactgatatctcacaagtatcatcactagtacccatgtatcatcaccaatacctgataggtatcatcactggtaccagataggtatcgtcaatgatacccatgtatcattaccggtacttatatgtatcatcatcggtacctcacaggtatcaacactaataccagacaggattgttattggtacccatgtatcatcaccgatacctgacatcaattggtacctatatgtatcttcaccgatacctcacaagtataatcaccggtacctacatgtattatcatcgatattgggtatcgaccaacccagattgttacaactgatatcataggtaccatcgagatacttggtacctatatcagcatgattcccatatgtaccaaatttaggactgggtatcgggtatttggttatcaagtacctgatacctagattggtctgatatctataggtaccatacctagtactaggtatcagggtacatgaggtatcatatacctaataccaactgagtatcgggtactaggtacctggtacctgaattgatgttgaacgataaatgttgatatcgggcctggtatcagatattagctttagtatcagatatcaactcacatgctacgtcacatgcatgcaactaccaacacagccacatcacatgcatgcatgtagctagcaacacagcacgagtaatcagtagaacgctgcctaataggaagcaggtggtgggggcccctagcgacgtggaagggtatctcgttcccatgggatcctgtggtctagctatcctcattaagtattagctattttttttctcaaaaatagattaatttgatgttttaagcaactttcgtatagaaattttttacaaaaaatacaccgtttagcagttttaaaatagtgcgtgcggaaaacgagggagataagttggaaaaaggggtgcctcaagagtccaggttggtaactcttgcctccagcatagaaaacggagcgatccattagcgcgtgattaattaaatattagctattttttttaaaaaatggaataatataattttttaaacaactttcggtagataaacttttttaaaaaaaaacaccgaaatagcagtttaaatagtgtaggcgcggaaatcgagatggaagagttccgatccaggactctggaacgcagccaagtatgcatatttttcggcccaccaggccacgtgctgtgttttctttctttacccggcccaccagtccaggtgaggtgtttccttttttttcgcgcgagttttggcacactgtgttcgcgcgtttcctatactttattttattttattttctgacattttagggaggaaaatggatgagaacatagtacaataaagtacatgtgttaccgacttttcgatagttaggtcattcttctctctctctctctcaatttatgatagagtttaatcttgtcattaattagaatatatgcatggttctattttgtttacatgtagtataggtcactgcatatttagtttggctccagctcattggcgagatgccgacgtgccgtgcgatgcggtggtgcgagaatggagcaaacaatgttcatgaagaccaagctcaactgcatgtggagtgctgcgagaagtagccgaattgcaagcaaggcaaggtcagtattagccgagtgaatcggtcctagctgtgcatgagatttagttgttgctagtgattaaccgcatatgctgcgattagtggtaatcatgtaaagggatttcttggcaaataagtaggattagttagttacttagtgcatggacatcccacgtctgtgtgcatggggagttgtggctgagtgggtttggccattgtaatctctttgcatgtactgagtctatataaacaagaaaacgatgtgagctagggggctgcatcaaccaaaagcttgagtgtgttctttcagttcttctgtgagtgtgtccacgagaaagaaaatttgagtgtttgtgattaacacctagagagtgaggagagattcctaacaatttacccctttttaattacgcagggcagtcatctgcttcgtcgtcctcgatcggccagagaatactacctccagcccaaaatatttgacgccgttaacttttttaaaaatgtttgaccgtttgtcttattcaaaaaatttaagtaattgttaattatttttctatcatttgatttattgttaaatatacttttatgtacacgtatagttttacacatattacaaaagtttttgaataaaacgaacggtcaaacatatttaaaaaagtcaatggtgtcaaacatttaggaaaggagggagtattaatctgcttctctatataatctgcttctcttagctcgttcgattttgctcaggcaagctcagagcttgattaggtgcatcatgttcacagcgatgcagcgcgtcctcatcaggtatggcagattcttgcagctgttcttccattcggatttcggaggagtgaagataactgtggaaatgcagggggagaaggatacctgcagcttcgtcttccttcctcactggcttcgctacagcctccgattcgcagaggtgagtgatcgattcatcttggggatgctgatttgatttcatcttcttgatttgcgaatcggggatggatgtcagtgtgatttgcgggttaatttgttggttgaacgggaaggtcgccgtcatcaccggcggcgccagcggcatcggcagggcgacggcggaggagttcgtcaggaacggcgtacgcgcgctgcgacgtcaccgacgaggcgcaggtcgcggcggccgtggacctcgccgtggcgcggcacgggcgtctcgacgtcgtcttcaacaacgccggcatccccggcgacctcatgccgaccccggtgagcgcgctggacctcgccgacttcgaccgcgtgatggcggtcaacacccgggcggtggtggcgggcgtcaagcacgccgcgcgcgtcatggtgccgcgccgccgcggcagcatcatctgcacggcgagcacggcgggggtgatcggcggcgtggcgatcccgcactacagcgtgtccaaggccgcggtgctcggcctggtgcgcgccgtggcgggcgagatggcgcactccggcgtgcgcgtgaacgccatctcccccaactacatctggacgcctatggcgatggtctccatggtcgcgctatacccaggccggagcgtcgacgagcaccgccggatcgtggatgacataaacgagatggaaggcgcgacgctggaggccgaggacgtggcgagggcggcggtgttcctcgcctccgacgaggctaagtacgtgaacgggcacaacctcgtcgtcgacggtggatacaccgtcggcaaggtgcccaacatgccagccccagatggccattgacaacataccacggttcatgaataataatgttggtggtgtgtgcactgttcgtagtactccttccattttatattatagttagaaaaatacctgtgcgttgcaatgggctatttaaatcttattattgtcatacggtttagatataaaaaattcattgtgggaattcgcttggattatttttaaagaaaatcatgagccacaattaggagtacggctttcatctcaagttaccatgcggagttttttaaaatagattttttatacgactccttttgtatttccaaaaacaaacaagcttaaaatccaactcaaacattgatctgtatttccaaaagcgaataatcttaaaaaccgacttaaatatggatggtgtatcaaaataccggcaaaaacatattcaatttttataatagtagagatagagatttgttttgacttttttaatcaaacttatttaagtctgactaaatttataaaaaaaaataacaatatttacaacatcaccaaagcaaatcaaagcaaatcgatcttgccatgacttggatccagtcgatctccaccattctaccggaagctctagatcccatccaccggggtgcggctatgacgacgacgcgagtcaccgaagcggaggaatcctaggcggggcccgccctgccgccgccgcgccggccatgccattcctctcgacaccgtcattcgacctctccactagtgccgagcccaccctcgcccgcgctctcctcgtcctcctgacgccgctcaccagctgacctcgcagcagcatgcagcgccggcgtcggaggcggaggagcggctgcgggaggccatccgggagctccaccgtcggcgtcaccagcatgggagaggaggggatggggatggggatgggaagggcccggtggatggaaaggagtatggtggtggtggtggactgctggtggtggtggggtggataaggtcgtgtggataaggttgtggggtggataaggttttgtttttgctgaggaagtattgggcctaatgggcatgtgctatattttggattcttcggtctattcagttaactgagcttcaaaaccgaattgacggaactaaattcagttagtagaaagtgctgaccgaatttattggtctcggttagttcggtttcggtttcggtttcggccatttcggttcgatttttcggtttggtctttttctgcccatccctaatcatgagccatggcggccaaattagaggtacgtacataaacataagctgagctgcctggcctgcttaagcagagttcaatctatcgcagcgttcttgtgtgcacaccacctcttgatcaaggtagccaacgaaacggcgatcatctgatcagctcgatatatattatagcagcaaaacccaagatcgatcgggcaggatgatgttcagaacagcgcagctcattctcaggttcatatgagttggaatgttcgatcaacattaccactccaaaatctaagctcactgaatctctgaatattgcatgtgtgtattgtcgcagggagacgaaccgagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgctgcttccagctcccagaagtaatcaatcaattaatggtaatttgactccttaattcgttgattatgtatttgttgcacttgcaggttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaaggcgacagccgcagagttcataaagaacggcgccaaggtgatcatcgccgacgtccaggacgacctcggccactccgtggtggcggagctcggcccggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcatctccgggaccatacggcgtcaggacgacgtggcgtccatggacctcgctggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcagcgcgggggtgctctccgtcccgagcatccccgtgtacaccatctccaaggccaccgtgatcgccatcgtgcgcgccacggcgtgcgggtgaacgccatctcgccgggcgccgtcaggacgccgctgttgagacactttatgaccgagatattcccggggagaagaggaggaggaggagctgaagcagatcgcggcgggcgacgacgacgtcgtcatggcgccggaacacatcgcgacagcggcggtgtacctggcatccgacgaggccatgtacgtgactgggcataacctcgttgtcgacgacggatacacggtatacaaagaagcggttatgcaacaagctagcaatgataatagtgagctataagtcaactata
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| CDS seq | atgttcagagcattgcagatcgtcctcaggggtaagagccgaggatttgtcagtcacttctcctccacggcttcaaattctgaaaggttggctgggaaggtggcggtgatcaccggcgcggcgagcggcatcggcaaggcgaccgcggcggagttcgtcaggaatggcgccaaggtcatcctcgccgacgtccaggacgacgtcggccgcgccgtcgcctcggagctcggcccggacgcggcgtcctacacccgctgcgacgtcaccgaagaggcgcaggtcgcggcggccgtggacctcgccgtggcgcggcacgggcagctcgacgtcatggtcaacaacgccggcatcgtgggctccctggcgcgccccccgctcggcgccctcgacctcgccgacttcgacgccgtcatggcggtgaacgcgcggggcgtcctcgcgggcgtcaagcacgccgcgcgcgtcatggcgccgcgccgccgcggtagcatcatctgcgtggcgagcgtcgcaggggtgctcggcagcgtgacgccgcacccgtacagcgtgtccaaggccgccgtgctcggcgcggtccgcgccgccgccggcgagatggcgcgctccggcgtgcgcgtgaacgccatctcccccaactacatcccgacgccgctggtgatgcgcatcatggcggagtggtaccccggggcgagcgccgacgagcaccgccgcgtcgtggagagggagatcaacgagatggagggcgcgacgctggagccggaggacatcgcgagggcggcggtgtacctggcctccgacgaggccaggtacgtgaacgggcacaacctcgtcgtcgacggcggggggagaaggatacctgcagcttcgtcttccttcctcactggcttcgctacagcctccgattcgcagagttcgtcaggaacggcgtacgcgcgctgcgacgtcaccgacgaggcgcaggtcgcggcggccgtggacctcgccgtggcgcggcacgggcgtctcgacgtcgtcttcaacaacgccggcatccccggcgacctcatgccgaccccggtgagcgcgctggacctcgccgacttcgaccgcgtgatggcggtcaacacccgggcggtggtggcgggcgtcaagcacgccgcgcgcgtcatggtgccgcgccgccgcggcagcatcatctgcacggcgagcacggcgggggtgatcggcggcgtggcgatcccgcactacagcgtgtccaaggccgcggtgctcggcctggtgcgcgccgtggcgggcgagatggcgcactccggcgtgcgcgtgaacgccatctcccccaactacatctggacgcctatggcgatggtctccatggtcgcgctatacccaggccggagcgtcgacgagcaccgccggatcgtggatgacataaacgagatggaaggcgcgacgctggaggccgaggacgtggcgagggcggcggtgttcctcgcctccgacgaggctaagtacgtgaacgggcacaacctcgtcgtcgacggtggatacaccgtcggcaagacgaaccgagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgctgcttccagctcccagaagttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaaggcgacagccgcagagttcataaagaacggcgccaaggtgatcatcgccgacgtccaggacgacctcggccactccgtggtggcggagctcggcccggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcatctccgggaccatacggcgtcaggacgacgtggcgtccatggacctcgctggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcagcgcgggggtgctctccgtcccgagcatccccgtgtacaccatctccaaggccaccgtgatcgccatcgtgcgcgccacggcgtgcggatattcccggggagaagaggaggaggaggagctgaagcagatcgcggcgggcgacgacgacgtcgtcatggcgccggaacacatcgcgacagcggcggtgtacctggcatccgacgaggccatgtacgtgactgggcataacctcgttgtcgacgacggatacacggtatacaaagaagcggttatgcaacaagctagcaatgataatagtgagctataa
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| Protein seq | MFRALQIVLRGKSRGFVSHFSSTASNSERLAGKVAVITGAASGIGKATAAEFVRNGAKVILADVQDDVGRAVASELGPDAASYTRCDVTEEAQVAAAVDLAVARHGQLDVMVNNAGIVGSLARPPLGALDLADFDAVMAVNARGVLAGVKHAARVMAPRRRGSIICVASVAGVLGSVTPHPYSVSKAAVLGAVRAAAGEMARSGVRVNAISPNYIPTPLVMRIMAEWYPGASADEHRRVVEREINEMEGATLEPEDIARAAVYLASDEARYVNGHNLVVDGGGRRIPAASSSFLTGFATASDSQSSSGTAYARCDVTDEAQVAAAVDLAVARHGRLDVVFNNAGIPGDLMPTPVSALDLADFDRVMAVNTRAVVAGVKHAARVMVPRRRGSIICTASTAGVIGGVAIPHYSVSKAAVLGLVRAVAGEMAHSGVRVNAISPNYIWTPMAMVSMVALYPGRSVDEHRRIVDDINEMEGATLEAEDVARAAVFLASDEAKYVNGHNLVVDGGYTVGKTNRVLGRTTTSPAFFSRFSTAASSSQKLAGKVAVITGGASGIGKATAAEFIKNGAKVIIADVQDDLGHSVVAELGPDAAYTRCDVADEAQVAAAVDLAVERHGHLDVLFNNAGISGTIRRQDDVASMDLAGFDRVMAVNARAVLAGIKHAARVMAPRRSGCVLCTASSAGVLSVPSIPVYTISKATVIAIVRATACGYSRGEEEEEELKQIAAGDDDVVMAPEHIATAAVYLASDEAMYVTGHNLVVDDGYTVYKEAVMQQASNDNSEL |
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| Function | Secoisolariciresinol dehydrogenase (Fragment) [UniProtKB/Swiss-Prot:Q94KL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0026330 | OsARC_07g0026330.01 | Chr07 | 27566503 | 27575640 | + | NAM | ||
| CDS seq | atgttcagagcattgcagatcgtcctcaggggtaagagccgaggatttgtcagtcacttctcctccacggcttcaaattctgaaaggttggctgggaaggtggcggtgatcaccggcgcggcgagcggcatcggcaaggcgaccgcggcggagttcgtcaggaatggcgccaaggtcatcctcgccgacgtccaggacgacgtcggccgcgccgtcgcctcggagctcggcccggacgcggcgtcctacacccgctgcgacgtcaccgaagaggcgcaggtcgcggcggccgtggacctcgccgtggcgcggcacgggcagctcgacgtcatggtcaacaacgccggcatcgtgggctccctggcgcgccccccgctcggcgccctcgacctcgccgacttcgacgccgtcatggcggtgaacgcgcggggcgtcctcgcgggcgtcaagcacgccgcgcgcgtcatggcgccgcgccgccgcggtagcatcatctgcgtggcgagcgtcgcaggggtgctcggcagcgtgacgccgcacccgtacagcgtgtccaaggccgccgtgctcggcgcggtccgcgccgccgccggcgagatggcgcgctccggcgtgcgcgtgaacgccatctcccccaactacatcccgacgccgctggtgatgcgcatcatggcggagtggtaccccggggcgagcgccgacgagcaccgccgcgtcgtggagagggagatcaacgagatggagggcgcgacgctggagccggaggacatcgcgagggcggcggtgtacctggcctccgacgaggccaggtacgtgaacgggcacaacctcgtcgtcgacggcggggggagaaggatacctgcagcttcgtcttccttcctcactggcttcgctacagcctccgattcgcagagttcgtcaggaacggcgtacgcgcgctgcgacgtcaccgacgaggcgcaggtcgcggcggccgtggacctcgccgtggcgcggcacgggcgtctcgacgtcgtcttcaacaacgccggcatccccggcgacctcatgccgaccccggtgagcgcgctggacctcgccgacttcgaccgcgtgatggcggtcaacacccgggcggtggtggcgggcgtcaagcacgccgcgcgcgtcatggtgccgcgccgccgcggcagcatcatctgcacggcgagcacggcgggggtgatcggcggcgtggcgatcccgcactacagcgtgtccaaggccgcggtgctcggcctggtgcgcgccgtggcgggcgagatggcgcactccggcgtgcgcgtgaacgccatctcccccaactacatctggacgcctatggcgatggtctccatggtcgcgctatacccaggccggagcgtcgacgagcaccgccggatcgtggatgacataaacgagatggaaggcgcgacgctggaggccgaggacgtggcgagggcggcggtgttcctcgcctccgacgaggctaagtacgtgaacgggcacaacctcgtcgtcgacggtggatacaccgtcggcaagacgaaccgagttcttggccggacaaccacttctccagctttcttctctcgcttctccactgctgcttccagctcccagaagttggccggcaaggttgcagtcatcaccggcggtgccagcggcatcggcaaggcgacagccgcagagttcataaagaacggcgccaaggtgatcatcgccgacgtccaggacgacctcggccactccgtggtggcggagctcggcccggacgccgcgtacacgcgctgcgacgtcgccgacgaggcgcaggtcgccgcggccgtcgacctcgccgtggagcgccacggccacctcgacgtcctcttcaacaatgccggcatctccgggaccatacggcgtcaggacgacgtggcgtccatggacctcgctggcttcgaccgcgtgatggcggtgaacgcccgcgcggtgctcgccggcatcaagcacgccgcgcgcgtcatggcgccgcgccgctccggctgcgtcctctgcacggccagcagcgcgggggtgctctccgtcccgagcatccccgtgtacaccatctccaaggccaccgtgatcgccatcgtgcgcgccacggcgtgcggatattcccggggagaagaggaggaggaggagctgaagcagatcgcggcgggcgacgacgacgtcgtcatggcgccggaacacatcgcgacagcggcggtgtacctggcatccgacgaggccatgtacgtgactgggcataacctcgttgtcgacgacggatacacggtatacaaagaagcggttatgcaacaagctagcaatgataatagtgagctataa
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| Protein seq | MFRALQIVLRGKSRGFVSHFSSTASNSERLAGKVAVITGAASGIGKATAAEFVRNGAKVILADVQDDVGRAVASELGPDAASYTRCDVTEEAQVAAAVDLAVARHGQLDVMVNNAGIVGSLARPPLGALDLADFDAVMAVNARGVLAGVKHAARVMAPRRRGSIICVASVAGVLGSVTPHPYSVSKAAVLGAVRAAAGEMARSGVRVNAISPNYIPTPLVMRIMAEWYPGASADEHRRVVEREINEMEGATLEPEDIARAAVYLASDEARYVNGHNLVVDGGGRRIPAASSSFLTGFATASDSQSSSGTAYARCDVTDEAQVAAAVDLAVARHGRLDVVFNNAGIPGDLMPTPVSALDLADFDRVMAVNTRAVVAGVKHAARVMVPRRRGSIICTASTAGVIGGVAIPHYSVSKAAVLGLVRAVAGEMAHSGVRVNAISPNYIWTPMAMVSMVALYPGRSVDEHRRIVDDINEMEGATLEAEDVARAAVFLASDEAKYVNGHNLVVDGGYTVGKTNRVLGRTTTSPAFFSRFSTAASSSQKLAGKVAVITGGASGIGKATAAEFIKNGAKVIIADVQDDLGHSVVAELGPDAAYTRCDVADEAQVAAAVDLAVERHGHLDVLFNNAGISGTIRRQDDVASMDLAGFDRVMAVNARAVLAGIKHAARVMAPRRSGCVLCTASSAGVLSVPSIPVYTISKATVIAIVRATACGYSRGEEEEEELKQIAAGDDDVVMAPEHIATAAVYLASDEAMYVTGHNLVVDDGYTVYKEAVMQQASNDNSEL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0026330 | OsARC_07g0026330.02 | Chr07 | 27572125 | 27573316 | + | IsoSeq | ||
| CDS seq | atgttggtggtgtgtgcactgttcgtagtactccttccattttatattatagttagaaaaatacctgtgcgttgcaatgggctatttaaatcttattattgtcatacg |
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| Protein seq | MLVVCALFVVLLPFYIIVRKIPVRCNGLFKSYYCHT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 27572328 | 27572495 | + | OsARC_07g0026330.02 | OsARC_07g0026330.01,OsARC_07g0026330.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.093968 | 0.064026 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0663500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46920 | SBH | 0.527611 | 0.810907 | 0.610314 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0663500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021740 | SBH | 0.000000 | 0.000000 | 2.932166 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026790 | RBH | 0.043597 | 0.834109 | 1.177725 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021660 | SBH | 0.000000 | 0.000000 | 1.110588 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026380 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0454700 | RBH | 9.6727335 | 24.428213 | 2.8438605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027130 | SBH | 0.000000 | 0.0 | 0.047521 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0467400 | RBH | 0.3103655 | 0.0361435 | 1.5709715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026330 | RBH | 0.0 | 0.072331 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026840 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026500 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026850 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026530 | SBH | 0.0 | 0.438149 | 2.376935 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026340 | SBH | 0.098370 | 0.0 | 0.618520 |
