Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g46920 | OGI:07067180 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:28051057-28053431 | ||||||||
| Gene Symbol | TS2, _ | ||||||||||
| DNA seq | GTCAAGGAGAAGCACACCACACCTGAATACTTGAGGTTTGAGGAGGGCAGCTGAAGAGCAAGGCAGGATGTACAGCGCCCTTCACCTCGTTCAGAGGTACTGTGCATTCTTTCTCCTCACTCTGTATTTCATTTTAGAAAATATTTTGGATATGAAAAGAGGGGCATTTCATATTGATATGTATTGAGAAGAGGTTAAATGCGTTCGGCGGCTCATTCGAATGCAGACCTTCATGGACTCTGCCCACTACACTATCTTTTCTTTCTTATAGTTCTTTCCTTGTCATGTAGAGTTAACGTGTATTGCGATTAATCATGAGATGTGTTGCTCACGAAAGATCGCAATACTATTTTTTAAGTGTCTTTTTAGACCCTGTTTAAATGGAACTAAAACTTTTAAATCCCTATCACATCGGATGTTTGGACACTAATTATAAATATTAAACGTAGATTATTAATAAAACCCATCTATAATCTTGGACTAATTCGCGAGACGAATCTATTGAGCATAATTAATGATTAGCCTATGTGATGCTACAGTAAACATTCTCTAATTATGAATTTATTAGGCTTAAAAAATTTGTCTCGCAAATGAGTTTTTATTTATGTAATTAGTTTTGTAAATAATCTATATTTAATACTCTAAATTAGTGTCTAAATATAGATACTAAAGTGTAGAAAAGTATACTTTATTTGTGTCAAAATAATTTGACTATTTTAGGATTGAGATGGTATATAAGTTAGTGGCAGGCGGTAAGGATCTTTTTTTTTTGAAAAAAAATGAAGACGAGATTTTATTTGTGCTTTGTGCCAGGGGCAAGAGCAGAGCAGGGTTGACGATGTTGACTGGATTCGTCAACCGCTTCTCTTCCGTGTCAAGACCCGAAAGGTTTACAAGTCTACTTCATATATGCACATCCATAACAATGTTCCCTATGTTTTTAGGCCTTTCAAATGGGGTTTATTTCTTATGGAAATTCAAAGGAAACAAACTAATTTTTATGAGAAAAAGAATTATGTTCCAAATACACCATTGAGATTGTCAATTAGTACTCGTTTCAATCATAAGTAATTAACGGCTTAACTCTTACGATAAGATCTTTCTCATAGAGAATTAGAAAAGTTTGACTGAATCTAGTTCTAAAAGTCAAATATTTTTCATGGATGGGAGGAGCTAGTATAAAGTTGCTCCAAGATTTATGCTATGAATACTTTGAAAGAACTCAAATGCTTACATCAAACACTTATTTTTTCTCAGCTTATGTGAGCTTGAAATTAATACACGGATTACCTCGGTGTAGGTTGGCTGGAAAGGTGGCCGTGATCACCGGCGGCGCAAGCGGCATCGGCGAGGCGACGGCCAAGGAGTTCATCCGCAATGGCGCCAAAGTCATCATCGCCGACGTACAAGACGATCTCGGCCACGCCGTCGCCGCCGAGCTCGGCCCAGATGCGGCCTACACCCGCTGCGATGTCACCGACGAGGCGCAGATCGCGGCGGCCGTGGACCTCGCCGTGGCGTGCCACGGCCGCCTCGACGTCCTGCACAACAACGCCGGGGTCACGTGCTCCTACGTGGGGCCCCTCGCCTCCCTAGACCTCGCCGACTTCGACCGCGTCATGGCGGTGAACGCCCGGGCGGTGCTCGCCGGCATCAAGCACGCGGCGCGCGTGATGGCGCCACGGCGCGCCGGCTCCATCCTCTGCACGGCCAGCGTGGCGGGCGTGATCGGCAGCGATGTCCCCCACGCGTACAGCGTCTCCAAGGCGGCAGCCATCGGCGTGGTGAGGTCCGCCGCCGGCGAGCTGGCGCGCCACGGCGTGCGGCTGAACGCCATCTCGCCGCACGGCATCGCGACGCCGCTGGCGATGCGCGGGTTCGGCGACGTGCTGGCGTGGGCGGACGCCGAGAGATTGAAGCGGGTCATCGAGGAGGACATGAACGAGCTGGAGGGCGCAAAGCTGGAGGCGGAGGACATCGCGAGGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAAGTACATCACTGGGCATAACCTCGTCGTCGATGGCGGGTTCACCGTCGGCAAGCGCCTCAACTTCGCGCATGCTTGAGTTCAGAAAATCCGAAAATTTGACTTCCATGTGGACTTTGTTTTATTGGAATAATAATTCAGAGTTTGTGTATTGATTACCAGTTTGTTGTTTAGATTTGGTAATAGGGAAATAAGGATAATCTTAATCCAGAAACTATCAATTAGTTTTTATACTTGACATGTCATAAAAATCATCTATAGAAATTTATGTATCTAATAGGTGTTTTCTTTAAAATAAATTATTATTCAATTACATCTCTTCTCTCTTCTTTCATCCACATTTCTCATCGTTTTTATCTCT
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| CDS seq | ATGTACAGCGCCCTTCACCTCGTTCAGAGGGGCAAGAGCAGAGCAGGGTTGACGATGTTGACTGGATTCGTCAACCGCTTCTCTTCCGTGTCAAGACCCGAAAGGTTGGCTGGAAAGGTGGCCGTGATCACCGGCGGCGCAAGCGGCATCGGCGAGGCGACGGCCAAGGAGTTCATCCGCAATGGCGCCAAAGTCATCATCGCCGACGTACAAGACGATCTCGGCCACGCCGTCGCCGCCGAGCTCGGCCCAGATGCGGCCTACACCCGCTGCGATGTCACCGACGAGGCGCAGATCGCGGCGGCCGTGGACCTCGCCGTGGCGTGCCACGGCCGCCTCGACGTCCTGCACAACAACGCCGGGGTCACGTGCTCCTACGTGGGGCCCCTCGCCTCCCTAGACCTCGCCGACTTCGACCGCGTCATGGCGGTGAACGCCCGGGCGGTGCTCGCCGGCATCAAGCACGCGGCGCGCGTGATGGCGCCACGGCGCGCCGGCTCCATCCTCTGCACGGCCAGCGTGGCGGGCGTGATCGGCAGCGATGTCCCCCACGCGTACAGCGTCTCCAAGGCGGCAGCCATCGGCGTGGTGAGGTCCGCCGCCGGCGAGCTGGCGCGCCACGGCGTGCGGCTGAACGCCATCTCGCCGCACGGCATCGCGACGCCGCTGGCGATGCGCGGGTTCGGCGACGTGCTGGCGTGGGCGGACGCCGAGAGATTGAAGCGGGTCATCGAGGAGGACATGAACGAGCTGGAGGGCGCAAAGCTGGAGGCGGAGGACATCGCGAGGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAAGTACATCACTGGGCATAACCTCGTCGTCGATGGCGGGTTCACCGTCGGCAAGCGCCTCAACTTCGCGCATGCTTGA
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| Protein seq | MYSALHLVQRGKSRAGLTMLTGFVNRFSSVSRPERLAGKVAVITGGASGIGEATAKEFIRNGAKVIIADVQDDLGHAVAAELGPDAAYTRCDVTDEAQIAAAVDLAVACHGRLDVLHNNAGVTCSYVGPLASLDLADFDRVMAVNARAVLAGIKHAARVMAPRRAGSILCTASVAGVIGSDVPHAYSVSKAAAIGVVRSAAGELARHGVRLNAISPHGIATPLAMRGFGDVLAWADAERLKRVIEEDMNELEGAKLEAEDIARAAVYLASDEAKYITGHNLVVDGGFTVGKRLNFAHA |
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| Function | Secoisolariciresinol dehydrogenase (Fragment) [UniProtKB/Swiss-Prot:Q94KL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g46920 | LOC_Os07g46920.1 | Chr07 | 28051057 | 28053431 | + | MSU_osa1r7 | ||
| CDS seq | ATGTACAGCGCCCTTCACCTCGTTCAGAGGGGCAAGAGCAGAGCAGGGTTGACGATGTTGACTGGATTCGTCAACCGCTTCTCTTCCGTGTCAAGACCCGAAAGGTTGGCTGGAAAGGTGGCCGTGATCACCGGCGGCGCAAGCGGCATCGGCGAGGCGACGGCCAAGGAGTTCATCCGCAATGGCGCCAAAGTCATCATCGCCGACGTACAAGACGATCTCGGCCACGCCGTCGCCGCCGAGCTCGGCCCAGATGCGGCCTACACCCGCTGCGATGTCACCGACGAGGCGCAGATCGCGGCGGCCGTGGACCTCGCCGTGGCGTGCCACGGCCGCCTCGACGTCCTGCACAACAACGCCGGGGTCACGTGCTCCTACGTGGGGCCCCTCGCCTCCCTAGACCTCGCCGACTTCGACCGCGTCATGGCGGTGAACGCCCGGGCGGTGCTCGCCGGCATCAAGCACGCGGCGCGCGTGATGGCGCCACGGCGCGCCGGCTCCATCCTCTGCACGGCCAGCGTGGCGGGCGTGATCGGCAGCGATGTCCCCCACGCGTACAGCGTCTCCAAGGCGGCAGCCATCGGCGTGGTGAGGTCCGCCGCCGGCGAGCTGGCGCGCCACGGCGTGCGGCTGAACGCCATCTCGCCGCACGGCATCGCGACGCCGCTGGCGATGCGCGGGTTCGGCGACGTGCTGGCGTGGGCGGACGCCGAGAGATTGAAGCGGGTCATCGAGGAGGACATGAACGAGCTGGAGGGCGCAAAGCTGGAGGCGGAGGACATCGCGAGGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAAGTACATCACTGGGCATAACCTCGTCGTCGATGGCGGGTTCACCGTCGGCAAGCGCCTCAACTTCGCGCATGCTTGA
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| Protein seq | MYSALHLVQRGKSRAGLTMLTGFVNRFSSVSRPERLAGKVAVITGGASGIGEATAKEFIRNGAKVIIADVQDDLGHAVAAELGPDAAYTRCDVTDEAQIAAAVDLAVACHGRLDVLHNNAGVTCSYVGPLASLDLADFDRVMAVNARAVLAGIKHAARVMAPRRAGSILCTASVAGVIGSDVPHAYSVSKAAAIGVVRSAAGELARHGVRLNAISPHGIATPLAMRGFGDVLAWADAERLKRVIEEDMNELEGAKLEAEDIARAAVYLASDEAKYITGHNLVVDGGFTVGKRLNFAHA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.527611 | 0.810907 | 0.610314 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0664400 | SBH | 0.523529 | 0.0 | 3.877373 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g40250 | RBH | 0.000000 | 0.232641 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0664400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026790 | SBH | 0.0 | 0.0 | 0.658171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026830 | SBH | 0.0 | 0.0 | 3.480390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026650 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026340 | SBH | 0.022496 | 0.102586 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026610 | SBH | 0.0 | 32.189693 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0455200 | SBH | 1.909187 | 0.9786 | 0.1270485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027130 | RBH | 0.000000 | 0.0 | 0.047521 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0468000 | SBH | 1.1362855 | 0.344752 | 0.024337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026400 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026830 | SBH | 0.0 | 6.555653 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026510 | RBH | 0.0 | 26.550909 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026900 | SBH | 0.0 | 1.227411 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026340 | SBH | 0.0 | 0.706287 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026530 | SBH | 0.0 | 0.438149 | 2.376935 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026340 | RBH | 0.098370 | 0.0 | 0.618520 |
