Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0026400 | OGI:07067180 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:28941941-28952893 | ||||||||
| Gene Symbol | OsSDR110C-MI4, SDR110C-MI4, TS2, _ | ||||||||||
| DNA seq | atggcggtgaacgcccgggcggtgctcgccggcatcaagcacgccgcgcgcgtgatggcaccacgacgcaccggctccatcctctgcacggccagcgtggcgggcatgatgggcggcgagatgccccacgcgtacaacgtctccaaggcggcggtcataggtgtggtgcggtccgccgccggcgagctggcacgccacggcgtgcggctgaacgcgatctcgccgctcggcatcgcgacgccactggcgatgcgcgggttcggcgacatgctggcgtgggcggacgccgagcgggtgaggcggctcatcgaggaggacatgaacgagctagagggcgcgacgctggaggcggaggacatcgcgagggcggcggtgtacctcgcctccgacgaggccaagtacgtcaccgggcataacctcgtcgtcgacggcgggttcaccgtcgggaagcggctcaacgtggcgcgtgcttgagtttagaaaatcagaaaatttaatttccatgtggactttgttttatttgattaataattcagagtttatgtattgattaccagtttgttgtttagatttggtaatagggaaataaggataatcttaatccagaaactatcaattagtttttatactcgacatgtcataaaaatcatatatagaaatatgtacctaataggtgctttctttaaaataaattattattcaattacatctcttctctttcctttcatccacgtttctcatcgtttttattcgtagttgctatatgtagagttggcttgcatatattttttttacgtgatatattaattgctatgaaaactagctaaaatagagggttagaatcgtcctgagtagaccattcgcccacattctctttcaactaatcgcagcctttcaccatttaaatttctatatacctaatcttctaaaggaatcacaatatctttccatgtaattttattaatttctaatatttgtatttaagtttaaaacatcttatattttaggacagatgacacacacaaagcaacagcagcgcgatgccatcttgttggactcttattacaaaattattggggtgtggtgtgtttcttttttctctttttccacgtgagatggcacatgccgtgtctctttgatgatgccaaagtttagattgtttcgtatatgtccgagatagatctgggagtattttgattttttttacactaaagagagagctttattagtgactgaataaagggttacattcttggtttaacaagtctagaatttgtactcgagcacaccgcctccactcagcactagacctagtactcgttgccattcgagcaagatcgtgagtcaccctattcgcttttctctttatcttgtgcacttgcatctgctgaagacaccgcatgaccttttatctccaagattattgccagccagtttgatctcaatgagattttgttctgtagagcttggcaacctctgcattgtctaactccagaatgattggcatatggatccactgagctgcattcctgagaccttcaaggcaggatagcgcttccgcttcagtagcttatccacgaaggtgaagagtattttgttggattcattttgaaccacatctctctcactacatttttcacctccaattaatcatcgacgctgacatcatcctcctatcgtcagcatctaccaccgtattgtacctgctctagtggaatagtaccattattataacccctaaccgcacgttttaataactatttcatagattaaagtcaataatttaattattgtcctctagcacaataatagtaatccgtacattttccattcttttttcagatttttaatttataaactactcaaccaatccctctccacatactacagtctgtatactccgaggaacctggaagcgaagcaaatttcacgatgatgagcgcagcagccaacaaaattctcaggttcgcatcttctccggtagaaaacgctcgtgcaaactgtgaaattgtgatgaattcaaatttaaattttcttcggatttgtattatgttatatacgtacacgtgttgcagggagaggagcagaggtgttcgtccgatgttctcttccggcttggccgatcgcctcttctcctcgtcggcgtcaagctccaagaggttggaagggaaagtggccgtgatcaccggcgcggtgggcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggtcatcctcgccgatatccaggacgacctcggccgcgccatggccgccgagctcggcgcggacgccgcgtcgtacacgcactgcgacgtcaccgtcgaggcggacgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcggccccgcccacgctctcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgcccggtccatggtggcctgcctcaagcacgcggcgcgcgtcatgtccccgcgccgcgccggctgcatcctctgcacggcgagctccacggcgctgatcggcgacctggcggcgccggcgtactgcatctcgaaggcggccgtcgtcggcatggtgcggacggtggcaaggcagctggcgcgcgacggcgtgcgcgtgaacgccatctcgccgcacatcatcccgacggcgctggtgacgcgcgtcatctccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggacatgcaggagctggaaggggcgtcgctggaggtggaggacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggtcggcaaggacctcctccggaatccaccgagctttgcttgacatcttggaggtgctcgtttcgaattgaaatgctaaaatagaattatactatatatcaggtaacaatttggtcaataatttgtttcaaatgtaaccttgatatatacatcggcatgtgtatgtccgtggttatcttactcttacggaagtcctataatctggattggaattagtaaattgtttaacaattaacacgacgattgtagttgctcctatcattaatatatgatgctttaatgctaatcttagtgttaaaaacggttgtatcgtgcgagccataaatttctcctgttggaatctccttattgtacatgccgagttaagggtctttgatttgtagaaaaaaaaaatatagaaattttggagaattttaattctatagaaaaaaatttcatcaaggtctttaaaacaaaggattgaattctatcatatcctttgaaaatcctacacaatggataatcctatagagattttagagagaacttaacaagaaattcaacctgttgaaaaattttcctttgagtctatctctcctatctgactcctgtgtgttccgcggtccaatcaaattgtcatttatgtgtttttttctatgttttacaattctctatattgtacttgcgtacttatcaaaatcctgcattttctctatatcttcatttttccatttctgggattcaaatgggtcataaaggattgtttaagtcattttacaagggttgatggtctgttccatccagagtggttggatgtgtacttcttgctatttcaacaggtactacattaaaacttggcataaatacaaatcattttggatgcttttcttctcatcagacgcagagccctaaaacagaacaatgataatctgatatcaatgaacatggctatatcaatgaatatgacagagagttctatcgtcgatgcagagtgttcaaatgcaagttagatcgattatgcctatcgctttaatccccggttatacttcatgacagagagttctgtcctcgatccacactcttcagcttttaaaatggcaactttttgttactaaaggggtccatcgattactcaaaggtagatgatcttgttctccaacaactatacatgatatattataaataaattatatatctcgttgaaacacacggacacattactttttcaacacagacacattactagcaaattataatttgtaaagaattttgagatgttttgtcatgttccgcgaagggcaacatgatatcaaaaggaagttctcagaacctaggactactattgtggtatttatttttctggacattattgcccaacagttggtcccctcatgtttaaaacatggctccaccaacgcacatgaaagacgccgagtgctctcgtcataggcagggccacaagcgccctcataagggcccgtgcatgtccaatgtggagcctaatgtccgagctgatctttctaagaccacttcatcgcattatgcatgctccaatggtactttctctaggtcgataatatttgtccttttagataaagctgatgtcaaacttaaaaatatttgactaacctctaatatttgtttgtcttagaaatatggagctcaaatgtataaattaatcttaaaaaatatttcaacaaaatcatatatttgttgacgtttatatacatattataataaaaaatataggttagagttgtttcttagagaccgcatccgtatccaaaatgataagtattatcaatatggaggaagtagtactatcaccaaccatcgtgtatttcaaaaatttacgcaacacaaaacccactaattattgtccttaatttggcccttcacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagacacacacacatatcctaccattttcccccatttgtcctattaagtgtccttcttattatcccctatatatactcttctaagccgtacggaaaggggtgacgttcccagggttattcccctacgtttataatcagctcctttacagtgatctaacagtatttaactagctcctctcttccgagacatctggactctcgagcttggaatcgaagcatcagtgaacacgagagcatgacgccggtggcatattcgttgaggatgatcaacgcagctgggcaacttcttctcaggttgccatcgtcttcttcatcttctctagagaaattgtgatgattttgatctttttattttcatacgtacacgcgttacagggggaggaacagaggtgttcgtccgatgttctcttccggcttggccgatcgcttcttctcctcgtcggcgtcaagctccagaaagttggatggaaaagtggccgtgatcaccggcgctgcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcacggtggaggcggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcagcaccgcccacgctcgcggcactcgacctcgacgactacgaccgcgtcatggccgtcaacgccaggtccatggtcgcctgcctcaagcacgcgtcgcgcgtcatggccccgcgccgcgccggttgcatcctctgcacggcgagctccacggcggtgctcggcaacatcgggcccctcgcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctccccgcacgccgtcccgacgccgatggcgctaggcatcatgtccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtcgcgagggcggccgtctttttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcactgtaggcaaggtgctcgtccgggatcctccggggtcagcttgaattgatgacggaattgtcacgcaatgcttagcccgtcgagttgatggacgtccagtgcttatctcagtcttatccgtacatcgacaagcctgtccaaatttggaggttgctgtctcggcatttcaaatccttcgttctttctcagcaaactcaatggactattccgtttgcgtaagccattcaaatatcgaatcatcgtacgtattattgtgattgtgttcatctctccgaaattcaccagtggcttgtggcaatagcaaaggagctgtagccaaaccactcgaactaatggtcttatatagtttactccaaataactaattgtttgaggctaaaacacttttcacgacgtgtttgccggacagactacacaactaagcacaccgcatttctgtcaggcaataaaaaaaactagccgttggggaattcctgagtcttctgatagttagattgacatctaaacactggtcggatagacccttatctcagtcagatcatccaactaagcttaatcatactgaatttctatccaacagtaagtaaaaaaaaaaactagtcgatggggatttctggatattctgatagtcggaccggccttctaacgttggtgaaataggtccttatctcaattggtccatctctaattaatccaatcaaacctcatgttggatttcagtataactgacaattaataaaacaacgatttctgatgacttgagtgttggatttgggtgtttttggattctatgcaaagcttattaaaagggctatcgaacccatgaacaatccgtccaataatctacaaattttcttgaggatatagggtccaaactctaaagataactccactgggatatgttcacttctttctttgcttaggacttgagaaaacaaaccacacttagctagacagagtggttcgatatggacatcctcgtacattcagctggtttgttttttcaatatatagattaaaatttgacgccaatgtaaatcgtttgaacggatgcttcacctttcatcattggcgcatagagcctaaaacactgataatctggtcaatggaaatggacaaagtctcatagttagacaatgtgcgtagccaggtgtcatcataattattctatggaaatatggggtaactttacaaatatacggtacaaagcatcaatctataatgaaccctttaatttacaaatgtttattgatgtccttgacaccacaaagcaccttctgttcttttctaattaagatatagatttgacatcggttctattaacattgttaaacaatatgtttcgtgtaaaaactttatatccacaatttactttaaaatatcaaataacataagtttttaaggttgtaataattaaactcaattaatcaagcattaatggctttcttattttacgtgccctaactatatcgtcatctaataggtgggctcttcaggaatagatttcaaagttttggctaaatgatgcttataatcttatttcatagcttgtctgtgaagattctctcattgagtaatttattcccttttccccgaaaaagaaaaactatatgttgatcatctaacttcaccaaaataacacactgtacgcccacatggaccttggctctccccctgactataatagtggagtcgtattataattcaaaccctataacacattagaaaattcttccagacattaaacccactaattattgaccattagcacactaatagtactctatttgtttttatgcttttttttttctgatcttcttgctatttaaccacaccctatctacagactgctgtgtgctaagatctctcgactcctggaagcgaagcagcaataatcatgatgctcaacgcagcagccaaaaaacttctcaggttcgcatcttctccagtaaaaatcgctgcatcttctccggtactcactccgtttgacaatataagattttctatcatcattgcccacatacatatagatgttaatgaatctagacatatgtatgtgtttaaattcattaacatctaaatatgggcaatactagaaagtcttacattgtgaaacgaaggaagtaaaaaacattcgtgcaaaccgtgaaattttgatgattttaaacatttttcacgtacactttttgcagggggaagagcatagctgctcgtcagctattctcctccggcttggcggatcgtttcttctcctcgtcggcgtcaagctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcatcgccgatatccaggacgacctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtctacagcaacgctgccatcgcgggcggcgcgcctccggccacgctcgcggccctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcaccgcggcggtgctcggcgtggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccgtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggccaccgccgaggaggtgaggaggatggtgacgagggacatgcacgagctggaaggggcgtcgctggaggtggacgacatcgcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcacggtaggcaaggtgctcgtccgcgatcctccgagctttgcttgacatcttggaggtgctcgtttcgaattgaaatgctaaaatagaattatatatcaggtaacaatttggtcaataatttgcttcaaatgtaaccttgatacctcggcatgtgtatgtccgtggttcttattcttacggaagtcctataatttggattggaattagtaaattgtttaacaattaacgcgacgattgtagttgctccgatcattaatatatgatgttttaattctaatcttagtgttaaaaacggttgtatcatgcgagccataaattactcgtgttggaatctccatattgtacatgccgagttaagggtcctttgattttggaagattttttttttttgatattaagattttggaagattttaattctataggaaaatttttcatcaaggttttcaaaacaaaggaatgtattctatagtatcctttgaaaatcctatgtaatggataatcctatagaaattttgaagaaaacttagcaagagcgcacgctttaatctcttgaaaaattatcctttgagtctctctccatcttattcctgtattttttctgcagtccaatcaaactgccatttatatgtcttttctatgttttacaattctttgttttttacacattcttatcacaatcctgcattttctctatgggcctgtttggttagtaccacattttgccacacttgtggtatgttagtttgaccaaatgtggctagtgtttggtttgtttctataactttggcatgccacactttctactcttttggtcccactagtcatagacccttttcttagccaaagtttgccacaagtgtggccatcaaattttgagccacacaatttgcatcttgccacacctttggtataaaaactgtggtaaattgaggtgggcatctaaacagcccctatgtcttcgtttaagtcattttactagggttgttggtctgttccatccagagtggttggatgtgtacttcttgctatttcaacaggtactacgactgtgtttagatccaaagtttggatccaaacttcagtccttttccatcacatcaacctgtcatacacacacaacttttcagtcacatcatctccaatttcaaccaaaatccaaactttggatccaactaaacaaatccgtaacattaaaacttggcataaatacaaaacattccggatgcttttcttctcatcagacgcagagcctagaacagaacactgataatctgatactatcaatgagcatggctatatcaatgaatatgacgaagagttctatcgtcgatgcagtcttcaaatgcaagtttgatcagttatgcctatcgctttaatccccggttgtacttcatgacagagagttctatcctcgatccacactcttcagcttttaaaatgacaactttggtctttgggtactaaaggggtccatcgattcttcctcaaaggtagatgaaatcgttctccgacaactatacatgcaagtgacatattataaacgaattgtatttctcattgaaacgcacgggcacattactagtaagttataatttgtgaagcattttgagatgttttgtcatcttctgcgaagggcaatatgatatccaaaaggaagttctgagaaccttggactactattgtggtttttatttttctggacattattgtccaacagttggtcccctcatgtttaaaacgtggctccaccaacgcacatgaaaggcgtcgagtgctctcatcgcaggtagggccacaagcgctctcgtaa
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| CDS seq | atggcggtgaacgcccgggcggtgctcgccggcatcaagcacgccgcgcgcgtgatggcaccacgacgcaccggctccatcctctgcacggccagcgtggcgggcatgatgggcggcgagatgccccacgcgtacaacgtctccaaggcggcggtcataggtgtggtgcggtccgccgccggcgagctggcacgccacggcgtgcggctgaacgcgatctcgccgctcggcatcgcgacgccactggcgatgcgcgggttcggcgacatgctggcgtgggcggacgccgagcgggtgaggcggctcatcgaggaggacatgaacgagctagagggcgcgacgctggaggcggaggacatcgcgagggcggcggtgtacctcgcctccgacgaggccaagtacgtcaccgggcataacctcgtcgtcgacggcgggttcaccgtcgggaagcggctcaacgtggcgccagccaacaaaattctcagggagaggagcagaggtgttcgtccgatgttctcttccggcttggccgatcgcctcttctcctcgtcggcgtcaagctccaagaggttggaagggaaagtggccgtgatcaccggcgcggtgggcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggtcatcctcgccgatatccaggacgacctcggccgcgccatggccgccgagctcggcgcggacgccgcgtcgtacacgcactgcgacgtcaccgtcgaggcggacgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcggccccgcccacgctctcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgcccggtccatggtggcctgcctcaagcacgcggcgcgcgtcatgtccccgcgccgcgccggctgcatcctctgcacggcgagctccacggcgctgatcggcgacctggcggcgccggcgtactgcatctcgaaggcggccgtcgtcggcatggtgcggacggtggcaaggcagctggcgcgcgacggcgtgcgcgtgaacgccatctcgccgcacatcatcccgacggcgctggtgacgcgcgtcatctccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggacatgcaggagctggaaggggcgtcgctggaggtggaggacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggttgccatcgtcttcttcatcttctctagagaaattgtgatgattttgatctttttattttcatacgtacacgcggggaggaacagaggtgttcgtccgatgttctcttccggcttggccgatcgcttcttctcctcgtcggcgtcaagctccagaaagttggatggaaaagtggccgtgatcaccggcgctgcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcacggtggaggcggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcagcaccgcccacgctcgcggcactcgacctcgacgactacgaccgcgtcatggccgtcaacgccaggtccatggtcgcctgcctcaagcacgcgtcgcgcgtcatggccccgcgccgcgccggttgcatcctctgcacggcgagctccacggcggtgctcggcaacatcgggcccctcgcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctccccgcacgccgtcccgacgccgatggcgctaggcatcatgtccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtcgcgagggcggccgtctttttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcactgtaggcaaggtgctcgtccgggatcctccgggggggaagagcatagctgctcgtcagctattctcctccggcttggcggatcgtttcttctcctcgtcggcgtcaagctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcatcgccgatatccaggacgacctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtctacagcaacgctgccatcgcgggcggcgcgcctccggccacgctcgcggccctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcaccgcggcggtgctcggcgtggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccgtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggccaccgccgaggaggtgaggaggatggtgacgagggacatgcacgagctggaaggggcgtcgctggaggtggacgacatcgcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcacgttggtcccctcatgtttaaaacgtggctccaccaacgcacatgaaaggcgtcgagtgctctcatcgcaggtagggccacaagcgctctcgtaa
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| Protein seq | MAVNARAVLAGIKHAARVMAPRRTGSILCTASVAGMMGGEMPHAYNVSKAAVIGVVRSAAGELARHGVRLNAISPLGIATPLAMRGFGDMLAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLASDEAKYVTGHNLVVDGGFTVGKRLNVAPANKILRERSRGVRPMFSSGLADRLFSSSASSSKRLEGKVAVITGAVGGIGEATAKEFVRNGAKVILADIQDDLGRAMAAELGADAASYTHCDVTVEADVAAAVDLAVARHGRLDVVYSNAGIAGAAAPPTLSALDLDDYDRVMAVNARSMVACLKHAARVMSPRRAGCILCTASSTALIGDLAAPAYCISKAAVVGMVRTVARQLARDGVRVNAISPHIIPTALVTRVISETFPAATAEEVRRMVTRDMQELEGASLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTVAIVFFIFSREIVMILIFLFSYVHAGRNRGVRPMFSSGLADRFFSSSASSSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAAELGADAASYTHCDVTVEADVAAAVDLAVARHGRLDVVYSNAGIAGAAAPPTLAALDLDDYDRVMAVNARSMVACLKHASRVMAPRRAGCILCTASSTAVLGNIGPLAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMALGIMSETFPAATAEEVRRMVTREMQELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTVGKVLVRDPPGGKSIAARQLFSSGLADRFFSSSASSSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAGELGADAASYTHCDVTVEKDVAAAVDLAVARHGRLDVVYSNAAIAGGAPPATLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGVAAPAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMAIGLFSETFPAATAEEVRRMVTRDMHELEGASLEVDDIARAAVFLASDEAKFITGHNLVVDGGFTLVPSCLKRGSTNAHERRRVLSSQVGPQALS |
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| Function | Secoisolariciresinol dehydrogenase (Fragment) [UniProtKB/Swiss-Prot:Q94KL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0026400 | OsLima_07g0026400.01 | Chr07 | 28941941 | 28952893 | + | NAM | ||
| CDS seq | atggcggtgaacgcccgggcggtgctcgccggcatcaagcacgccgcgcgcgtgatggcaccacgacgcaccggctccatcctctgcacggccagcgtggcgggcatgatgggcggcgagatgccccacgcgtacaacgtctccaaggcggcggtcataggtgtggtgcggtccgccgccggcgagctggcacgccacggcgtgcggctgaacgcgatctcgccgctcggcatcgcgacgccactggcgatgcgcgggttcggcgacatgctggcgtgggcggacgccgagcgggtgaggcggctcatcgaggaggacatgaacgagctagagggcgcgacgctggaggcggaggacatcgcgagggcggcggtgtacctcgcctccgacgaggccaagtacgtcaccgggcataacctcgtcgtcgacggcgggttcaccgtcgggaagcggctcaacgtggcgccagccaacaaaattctcagggagaggagcagaggtgttcgtccgatgttctcttccggcttggccgatcgcctcttctcctcgtcggcgtcaagctccaagaggttggaagggaaagtggccgtgatcaccggcgcggtgggcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggtcatcctcgccgatatccaggacgacctcggccgcgccatggccgccgagctcggcgcggacgccgcgtcgtacacgcactgcgacgtcaccgtcgaggcggacgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcggccccgcccacgctctcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgcccggtccatggtggcctgcctcaagcacgcggcgcgcgtcatgtccccgcgccgcgccggctgcatcctctgcacggcgagctccacggcgctgatcggcgacctggcggcgccggcgtactgcatctcgaaggcggccgtcgtcggcatggtgcggacggtggcaaggcagctggcgcgcgacggcgtgcgcgtgaacgccatctcgccgcacatcatcccgacggcgctggtgacgcgcgtcatctccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggacatgcaggagctggaaggggcgtcgctggaggtggaggacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggttgccatcgtcttcttcatcttctctagagaaattgtgatgattttgatctttttattttcatacgtacacgcggggaggaacagaggtgttcgtccgatgttctcttccggcttggccgatcgcttcttctcctcgtcggcgtcaagctccagaaagttggatggaaaagtggccgtgatcaccggcgctgcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcacggtggaggcggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcagcaccgcccacgctcgcggcactcgacctcgacgactacgaccgcgtcatggccgtcaacgccaggtccatggtcgcctgcctcaagcacgcgtcgcgcgtcatggccccgcgccgcgccggttgcatcctctgcacggcgagctccacggcggtgctcggcaacatcgggcccctcgcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctccccgcacgccgtcccgacgccgatggcgctaggcatcatgtccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtcgcgagggcggccgtctttttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcactgtaggcaaggtgctcgtccgggatcctccgggggggaagagcatagctgctcgtcagctattctcctccggcttggcggatcgtttcttctcctcgtcggcgtcaagctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcatcgccgatatccaggacgacctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtctacagcaacgctgccatcgcgggcggcgcgcctccggccacgctcgcggccctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcaccgcggcggtgctcggcgtggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccgtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggccaccgccgaggaggtgaggaggatggtgacgagggacatgcacgagctggaaggggcgtcgctggaggtggacgacatcgcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcacgttggtcccctcatgtttaaaacgtggctccaccaacgcacatgaaaggcgtcgagtgctctcatcgcaggtagggccacaagcgctctcgtaa
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| Protein seq | MAVNARAVLAGIKHAARVMAPRRTGSILCTASVAGMMGGEMPHAYNVSKAAVIGVVRSAAGELARHGVRLNAISPLGIATPLAMRGFGDMLAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLASDEAKYVTGHNLVVDGGFTVGKRLNVAPANKILRERSRGVRPMFSSGLADRLFSSSASSSKRLEGKVAVITGAVGGIGEATAKEFVRNGAKVILADIQDDLGRAMAAELGADAASYTHCDVTVEADVAAAVDLAVARHGRLDVVYSNAGIAGAAAPPTLSALDLDDYDRVMAVNARSMVACLKHAARVMSPRRAGCILCTASSTALIGDLAAPAYCISKAAVVGMVRTVARQLARDGVRVNAISPHIIPTALVTRVISETFPAATAEEVRRMVTRDMQELEGASLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTVAIVFFIFSREIVMILIFLFSYVHAGRNRGVRPMFSSGLADRFFSSSASSSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAAELGADAASYTHCDVTVEADVAAAVDLAVARHGRLDVVYSNAGIAGAAAPPTLAALDLDDYDRVMAVNARSMVACLKHASRVMAPRRAGCILCTASSTAVLGNIGPLAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMALGIMSETFPAATAEEVRRMVTREMQELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTVGKVLVRDPPGGKSIAARQLFSSGLADRFFSSSASSSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAGELGADAASYTHCDVTVEKDVAAAVDLAVARHGRLDVVYSNAAIAGGAPPATLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGVAAPAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMAIGLFSETFPAATAEEVRRMVTRDMHELEGASLEVDDIARAAVFLASDEAKFITGHNLVVDGGFTLVPSCLKRGSTNAHERRRVLSSQVGPQALS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0664150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46852 | RBH | 0.0 | 0.478466 | 0.220224 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0663500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021740 | SBH | 0.000000 | 0.000000 | 2.932166 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021770 | SBH | 0.000000 | 0.491076 | 0.081963 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021660 | SBH | 0.000000 | 0.000000 | 1.110588 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026380 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026640 | RBH | 0.0 | 0.263647 | 7.292994 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0395800 | RBH | 0.236164 | 0.6171315 | 17.595075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022060 | SBH | 0.000000 | 0.000000 | 0.141945 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0467400 | RBH | 0.3103655 | 0.0361435 | 1.5709715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026870 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026900 | SBH | 0.0 | 1.227411 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026420 | RBH | 0.0 | 3.255497 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021280 | SBH | 0.000000 | 1.747666 | 0.490446 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021350 | SBH | 0.000000 | 2.304406 | 1.318664 |
