Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0664400 | OGI:07067180 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:28053814-28056606 | ||||||||
| Gene Symbol | TS2, _ | ||||||||||
| DNA seq | AAGGAGAAGCACACCACACCTGAATACTTGAGGTTTGAGGAGGGCAGCTGAAGAGCAAGGCAGGATGTACAGCGCCATTCACCTCGTTCAGAGGTACTGTGCATTCTTTCTCCTCACTCTGTATTTCATTTTAGAAATAATTTGGATATGAAAAGAGGGGCTTTTCATATTCATATGTATTGAGAAGAGGCTAAATGTATTCGGCGGTTCATTCGAATGCAGACCTTCATGGACTCTGCCCACTACACACTACACTATCTCTTCTTATGTGCCTGTCGGAAAGAGTTTCTATCAGTTACAGTTTCTCGTGGAATCTCTGGCTCTTCCAAACAATATAGTTTGTCACCTAAATTCTAAGAATTTGTAGTTATAGAATTTAGAAAATGAATTAAAAAACAGAAACTTAAAAACTCAGCTTTCCGGCCATATTTTCATAAGCTGGCTATCAACTAGCGGATTCTTAAAATTTTAAGCTCTCCAAATAACGCCTATAGCTCTTCCTTTATCATGTCGAGTTAACATATATTGCGATTAATCATGAGATGTATCGCTCACCAAATATCGCAATACTATTTTTTAAGTGCCTTTGTAGTGTAGAAAAGTCTACGTACTCCATTTGTTTTACAATAATTCGACTATTTTGGGATGGTGATGGTATATAAGTCAGTGGCAGGCGGTAAGGATCATTAAGAAAAAATACTCCCTCCTTCCCTAGATGTTTGACGCCGTTGACTTTTTAAAACATGTTTAACCATTCGTCTTATTCAAAAACTTTTGTGAAATATGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATAATAGGAAAAGAATTAATAATTACTTAAATTTTTGAATAAGATGAACGGTCAAACATTTTAAAAAAAAGTCAACGGCGTTTTTGGGGTGGAGGAAGGAATGAAGACGAGATTTTTATGGATGACGTGGTATTTGTGCTTTGTGGCAGGGGCAAGAACAGAGCAGGGTTGACGATGTTGACTGGATTCGTCAACAGTTTCTCCTCTGTGTCAAGACCCGAAAGGTTTACACGTCTACTCCATATATGCACATCCATAACAATGTTCCCTATGTTTTTAGGCCTTTCAAATGGGGTTTATTTCTTATGAAAATTCAAAGGAAACAAACTATTTTTATTTAAAAAATATTATGTTTCAAATACGCCATTGAGATTATCAATTAGTACTCGTTTCAATCATAAATAATTAATGGCTTAACTCAAATAATTAACGGCTTCACTCTTACGACAATATCTTTCTCGTAGAGAATTAGAAAAGTTTGACTGAATTATATTATATGTCAAATATTTTTCATTGATGGGAGGATCTAGTATATAAAGTACTCCCTCCATTTTATATTATATGTCATTTGACTTTCCTTTAATTAAACCTCTTTATATTTGATCAAATTTACAAAACAACTTAGCAACATCTACATTCTACAACACCAAATTAAATTCATTAAATTTAAAATTGAATATATATTTTGATAATAGGTTTATTTTATATTACAAATGTTAGTATTTTTTAAAAAATAAAACAAAAGTCAAACATCTGGTAATATGAAACGGATGGAGTAGTAGTACTACTCTGCCTCTGACTATCTCACCAATGGATTTGCTCCAAGAATCCAAGATTTATCCTAGGAATGCTTTGAAATAACTCAAATGCCACATCAAACAATTCTTTCCTCTCAGCTTATGTGAGCTTGCAATTAATACACGGATTACCTCGGTGTAGGTTGGCTGGAAAGGTGGCCGTGATCACCGGTGGCGCAAGCGGCATCGGCGAGGCGACGGCCAAGGAGTTCATCCGCAATGGCGCCAAGGTCATCATCGCCGACGTACAAGACGATCTCGGCCACACCGTCGCTGCCGAGCTCGGCCCGGGCTCGGCCTACACCCGCTGCGACGTCACCGACGAGGCGCAGATCGCGGCGACCGTGGACCTTGCCGTGGCGCGCCACGGCCACCTTGACATCCTGTACAACAACGCCGGGATCACAAGCTCCTCTGTGGGGCACCTTGCCTCCCTCGACCTCGCCGACTTCGACCGCGTCATGGCGGTGAACGCCCGGGCGGTGCTCGCCGGCATCAAGCACGCCGCGCGCGTGATGGCACCACGACGCACCGGCTCCATCCTCTGCACGGCCAGCGTGGCGGGCATGATGGGCGGCGAGATGCCCCACGCGTACAACGTCTCCAAGGCGGCGGTCATAGGTGTGGTGCGGTCCGCCGCCGGCGAGCTGGCACGCCACGGCGTGCGGCTGAACGCGATCTCGCCGCTCGGCATCGCGACGCCACTGGCGATGCGCGGGTTCGGCGACATGCTGGCGTGGGCGGACGCCGAGCGGGTGAGGCGGCTCATCGAGGAGGACATGAACGAGCTAGAGGGCGCGACGCTGGAGGCGGAGGACATCGCGAGGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAAGTACGTCACCGGGCATAACCTCGTCGTCGACGGCGGGTTCACCGTCGGGAAGCGGCTCAACGTGGCGCGTGCTTGAGTTTAGAAAATCAGAAAATTTAATTTCCATGTGGACTTTGTTTTATTTGATTAATAATTCAGAGTTTATGTATTGATTACCAGTTTGTTGTTTAGATTTGGTAATAGGGAAATAAGGATAATCTTAATCCAGAAACTATCAATTAGTTTTTATACTCGACATGTCATAAAAATCATATATAGAAATATGTACCTAATAGGTGCTTTCTTTAAAATAAATTATTATTCAATT
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| CDS seq | ATGTACAGCGCCATTCACCTCGTTCAGAGGGGCAAGAACAGAGCAGGGTTGACGATGTTGACTGGATTCGTCAACAGTTTCTCCTCTGTGTCAAGACCCGAAAGGTTGGCTGGAAAGGTGGCCGTGATCACCGGTGGCGCAAGCGGCATCGGCGAGGCGACGGCCAAGGAGTTCATCCGCAATGGCGCCAAGGTCATCATCGCCGACGTACAAGACGATCTCGGCCACACCGTCGCTGCCGAGCTCGGCCCGGGCTCGGCCTACACCCGCTGCGACGTCACCGACGAGGCGCAGATCGCGGCGACCGTGGACCTTGCCGTGGCGCGCCACGGCCACCTTGACATCCTGTACAACAACGCCGGGATCACAAGCTCCTCTGTGGGGCACCTTGCCTCCCTCGACCTCGCCGACTTCGACCGCGTCATGGCGGTGAACGCCCGGGCGGTGCTCGCCGGCATCAAGCACGCCGCGCGCGTGATGGCACCACGACGCACCGGCTCCATCCTCTGCACGGCCAGCGTGGCGGGCATGATGGGCGGCGAGATGCCCCACGCGTACAACGTCTCCAAGGCGGCGGTCATAGGTGTGGTGCGGTCCGCCGCCGGCGAGCTGGCACGCCACGGCGTGCGGCTGAACGCGATCTCGCCGCTCGGCATCGCGACGCCACTGGCGATGCGCGGGTTCGGCGACATGCTGGCGTGGGCGGACGCCGAGCGGGTGAGGCGGCTCATCGAGGAGGACATGAACGAGCTAGAGGGCGCGACGCTGGAGGCGGAGGACATCGCGAGGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAAGTACGTCACCGGGCATAACCTCGTCGTCGACGGCGGGTTCACCGTCGGGAAGCGGCTCAACGTGGCGCGTGCTTGA
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| Protein seq | MYSAIHLVQRGKNRAGLTMLTGFVNSFSSVSRPERLAGKVAVITGGASGIGEATAKEFIRNGAKVIIADVQDDLGHTVAAELGPGSAYTRCDVTDEAQIAATVDLAVARHGHLDILYNNAGITSSSVGHLASLDLADFDRVMAVNARAVLAGIKHAARVMAPRRTGSILCTASVAGMMGGEMPHAYNVSKAAVIGVVRSAAGELARHGVRLNAISPLGIATPLAMRGFGDMLAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLASDEAKYVTGHNLVVDGGFTVGKRLNVARA |
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| Function | Secoisolariciresinol dehydrogenase (Fragment) [UniProtKB/Swiss-Prot:Q94KL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0664400 | OsNip_07t0664400-01 | Chr07 | 28053814 | 28056606 | + | RAP2018-11-26 | ||
| CDS seq | ATGTACAGCGCCATTCACCTCGTTCAGAGGGGCAAGAACAGAGCAGGGTTGACGATGTTGACTGGATTCGTCAACAGTTTCTCCTCTGTGTCAAGACCCGAAAGGTTGGCTGGAAAGGTGGCCGTGATCACCGGTGGCGCAAGCGGCATCGGCGAGGCGACGGCCAAGGAGTTCATCCGCAATGGCGCCAAGGTCATCATCGCCGACGTACAAGACGATCTCGGCCACACCGTCGCTGCCGAGCTCGGCCCGGGCTCGGCCTACACCCGCTGCGACGTCACCGACGAGGCGCAGATCGCGGCGACCGTGGACCTTGCCGTGGCGCGCCACGGCCACCTTGACATCCTGTACAACAACGCCGGGATCACAAGCTCCTCTGTGGGGCACCTTGCCTCCCTCGACCTCGCCGACTTCGACCGCGTCATGGCGGTGAACGCCCGGGCGGTGCTCGCCGGCATCAAGCACGCCGCGCGCGTGATGGCACCACGACGCACCGGCTCCATCCTCTGCACGGCCAGCGTGGCGGGCATGATGGGCGGCGAGATGCCCCACGCGTACAACGTCTCCAAGGCGGCGGTCATAGGTGTGGTGCGGTCCGCCGCCGGCGAGCTGGCACGCCACGGCGTGCGGCTGAACGCGATCTCGCCGCTCGGCATCGCGACGCCACTGGCGATGCGCGGGTTCGGCGACATGCTGGCGTGGGCGGACGCCGAGCGGGTGAGGCGGCTCATCGAGGAGGACATGAACGAGCTAGAGGGCGCGACGCTGGAGGCGGAGGACATCGCGAGGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAAGTACGTCACCGGGCATAACCTCGTCGTCGACGGCGGGTTCACCGTCGGGAAGCGGCTCAACGTGGCGCGTGCTTGA
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| Protein seq | MYSAIHLVQRGKNRAGLTMLTGFVNSFSSVSRPERLAGKVAVITGGASGIGEATAKEFIRNGAKVIIADVQDDLGHTVAAELGPGSAYTRCDVTDEAQIAATVDLAVARHGHLDILYNNAGITSSSVGHLASLDLADFDRVMAVNARAVLAGIKHAARVMAPRRTGSILCTASVAGMMGGEMPHAYNVSKAAVIGVVRSAAGELARHGVRLNAISPLGIATPLAMRGFGDMLAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLASDEAKYVTGHNLVVDGGFTVGKRLNVARA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0664400 | OsNip_07t0664400-02 | Chr07 | 28053815 | 28056454 | + | IsoSeq | ||
| CDS seq | ATGGCGCCAAGGTCATCATCGCCGACGTACAAGACGATCTCGGCCACACCGTCGCTGCCGAGCTCGGCCCGGGCTCGGCCTACACCCGCTGCGACGTCACCGACGAGGCGCAGATCGCGGCGACCGTGGACCTTGCCGTGGCGCGCCACGGCCACCTTGACATCCTGTACAACAACGCCGGGATCACAAGCTCCTCTGTGGGGCACCTTGCCTCCCTCGACCTCGCCGACTTCGACCGCGTCATGG
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| Protein seq | MAPRSSSPTYKTISATPSLPSSARARPTPAATSPTRRRSRRPWTLPWRATATLTSCTTTPGSQAPLWGTLPPSTSPTSTASW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.523529 | 0.0 | 3.877373 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46930 | RBH | 0.385205 | 0.0 | 1.030031 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0664400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026750 | SBH | 1.307228 | 6.429875 | 2.368053 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026830 | SBH | 0.0 | 0.0 | 3.480390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026610 | SBH | 2.168056 | 7.725956 | 3.740138 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026340 | RBH | 0.022496 | 0.102586 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0454700 | RBH | 9.6727335 | 24.428213 | 2.8438605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027120 | SBH | 0.0 | 1.180298 | 0.221070 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0468000 | SBH | 1.1362855 | 0.344752 | 0.024337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026400 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026830 | RBH | 0.0 | 6.555653 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026900 | SBH | 0.0 | 1.227411 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026340 | SBH | 0.0 | 0.706287 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026530 | RBH | 0.0 | 0.438149 | 2.376935 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026300 | SBH | 0.439231 | 16.591320 | 10.141115 |
