Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0023790 | OGI:11080510 | 5/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:28844286-28847497 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctagcttgctagattctctggttagatcatgtgcccaaaagctgcaggatgtcattatggaggaggcaattctggttctaggggtaaaagaagaactccgagaactacagcgaagaatgtatcaaatacaatgctttcttaatgatgttgagcaaaagaggacagaggagtcatctgttaataactggcttcgtaatctgaaagatgccatgcataatgctgatgatattgtagacttggctaggttcgaaggaagcaagctactagcacaaagtcctttgttgccatcttcatcatcaagaaacttaactggatgtactggcctttcgattttctcttgccttcctactattcggcggcgccatgagatcgctatccggattagagacttcaatgctgaacttgacaagattttaaagcttggtaaaacgctttttaagattaggacaccgcctgcacaagttccgagtgtgaagcaaaagaaaacatgccaacttgtggaacctaatcttgtagggaaggaaattttacaggcttccacacgattggtagaactgcttcttgcacacaaggaaaagaagccctacaagattggtattcttggaacaggagggattggaaaaacaactctagctcaaaaaatatataatggccacaaagtaaaagaaacctttagcaagcgtgcttgggtttgtgtatctcagacgtattctgaagatgaaattttgaaagaaattctaaatggttttgaggtacatcaagagcagggtgaaactttcggaaagctcataagtaagcttgctaaagccgttgaagggacatgtttcatgattgttttggatgatgtttggcatcatgatgtgtggactaatctactaaggactccattaaatgctgctgcttctggagtaattatagttacaagtcgacatgacacagtgccacaggtaattggggtggattatgtgcatggagttaaattgatgtcaaaagacctagcatgggagctactttggaagagtatgaacattaatgaagagaaagaagtgcaacacctaaaagatattgggatggagatcgtttctaaatgtggccaccttcctctcgcaatcaaagttactgctagtgttctagcaactaaagatagaactgagaggcattggagaaaggttataaacaaaagtgcttggtttatggacaagcttcctgataatctcagaggagctttgtttctgagttatgacgagctatcacggcagctgaagcaatgttttctctattgtgtgttgtttccagaagattataaaatgttccgtgatgatttgattaggtgttgggttgctgaaggttttgtggaagaacaagatgggcaacttctagaagagacagccgaagaatattacgacgagttgatacataggaatctccttcaaccaacatgtagatgttttgaccatcatttagtaagaatgcatactcttttaagacagcttgctcaacatttgtcaggagatgaaattttttgtggagacacaaaatcactggagacaaaatctttgtcgaagatacaacgagttacaatatttactgaaaaagattatctagtaatccctgatgtaggcaaggagcggactatgagaacaaggactttgactattagtcatgccaagttaccaagagttgaagacacaatcttcaaaagatttccacatattcgagttctggatttgactggttcaaaattacagtgcattccaagttgcattggagatttgatccatctacgattggttgatcttgatcagactgacatatcttgtctcccagaatccattggttgtcttcaaaacctacagatattgaacttgcaacgctgtggtgccttacatagtcttcctttggccatcaccaaattgagaaatctaaggcggctcggtcttaatggtacaccaataaatgaggttccaaaagggataggcaaattgaaattcctcaatgatttagaagcatttccaattggtagaggaagtgagactgctaatgttcaagatggctggattctggaagaattgggtcctctttcacagctgcggcagctccatatgatcaaacttgagggagcggctcctccttgcagcagcagagattcattgctaacagacaaaaagcatctcaaatttctagagctgtgctgcagtgaaccaacgaatgaagcatacactgtggaagatgttagcaatattggcaagatctttgaggagctaacccctccgcgcaatctggaagagctagttattttgggattctttggttggaggtaccctacatggctagatacaacccatttgtgttcactgaaactcctgaaactcgaggcgtgcagattctgcgagcaacttcctccactcgggcagctacccaacctggcatgcctacaaattgcgggtgcaaccactgtcaccaagattggacctgaatttcttggctttggggtgctgggtaatcttggatccacagaagatgtagttgcctttcccaaacttgaatacttgaccatcaggtgtctgcccaactgggacgaatggtcctttttcagcgaagaagaagaagaaaatgttgctgctgctgccgttgttgctcgtccaaggaagcagcggctgctgccatgcttgaatgtgttaatccttgaacactgccccaaactgaggggtctcccacgacagcttggaagggaggccgtaagcttgacggacctcattataagagaagcaaaatccacgaagatggtggaagacctcccattcctttctgattgtctttcgatcgaaggatgtgaagcccttgagagggtctccaacattccccaagtgagagagctgcatttacatggctgtccaaactttaagtgtgttgaggatgtgagcaatcttcagggattatgcgtggatgaatcaattaaagagatccctagtgttcttgggcttctagagaaaggctggtgtggagacgagctggatgttcacgtggtgcgtaatcttgagaaacgaggtatgctactattattacacgaacacatgcttaattaattcgtgtgtgtctggagtagttggttatattatctgaatttcgcaccccttgaagtcatcggattgtgcatttcttccttagtttctactcctggtgtacaggcgttgctatcatctcataa
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| CDS seq | atggctagcttgctagattctctggttagatcatgtgcccaaaagctgcaggatgtcattatggaggaggcaattctggttctaggggtaaaagaagaactccgagaactacagcgaagaatgtatcaaatacaatgctttcttaatgatgttgagcaaaagaggacagaggagtcatctgttaataactggcttcgtaatctgaaagatgccatgcataatgctgatgatattgtagacttggctaggttcgaaggaagcaagctactagcacaaagtcctttgttgccatcttcatcatcaagaaacttaactggatgtactggcctttcgattttctcttgccttcctactattcggcggcgccatgagatcgctatccggattagagacttcaatgctgaacttgacaagattttaaagcttggtaaaacgctttttaagattaggacaccgcctgcacaagttccgagtgtgaagcaaaagaaaacatgccaacttgtggaacctaatcttgtagggaaggaaattttacaggcttccacacgattggtagaactgcttcttgcacacaaggaaaagaagccctacaagattggtattcttggaacaggagggattggaaaaacaactctagctcaaaaaatatataatggccacaaagtaaaagaaacctttagcaagcgtgcttgggtttgtgtatctcagacgtattctgaagatgaaattttgaaagaaattctaaatggttttgaggtacatcaagagcagggtgaaactttcggaaagctcataagtaagcttgctaaagccgttgaagggacatgtttcatgattgttttggatgatgtttggcatcatgatgtgtggactaatctactaaggactccattaaatgctgctgcttctggagtaattatagttacaagtcgacatgacacagtgccacaggtaattggggtggattatgtgcatggagttaaattgatgtcaaaagacctagcatgggagctactttggaagagtatgaacattaatgaagagaaagaagtgcaacacctaaaagatattgggatggagatcgtttctaaatgtggccaccttcctctcgcaatcaaagttactgctagtgttctagcaactaaagatagaactgagaggcattggagaaaggttataaacaaaagtgcttggtttatggacaagcttcctgataatctcagaggagctttgtttctgagttatgacgagctatcacggcagctgaagcaatgttttctctattgtgtgttgtttccagaagattataaaatgttccgtgatgatttgattaggtgttgggttgctgaaggttttgtggaagaacaagatgggcaacttctagaagagacagccgaagaatattacgacgagttgatacataggaatctccttcaaccaacatgtagatgttttgaccatcatttagtaagaatgcatactcttttaagacagcttgctcaacatttgtcaggagatgaaattttttgtggagacacaaaatcactggagacaaaatctttgtcgaagatacaacgagttacaatatttactgaaaaagattatctagtaatccctgatgtaggcaaggagcggactatgagaacaaggactttgactattagtcatgccaagttaccaagagttgaagacacaatcttcaaaagatttccacatattcgagttctggatttgactggttcaaaattacagtgcattccaagttgcattggagatttgatccatctacgattggttgatcttgatcagactgacatatcttgtctcccagaatccattggttgtcttcaaaacctacagatattgaacttgcaacgctgtggtgccttacatagtcttcctttggccatcaccaaattgagaaatctaaggcggctcggtcttaatggtacaccaataaatgaggttccaaaagggataggcaaattgaaattcctcaatgatttagaagcatttccaattggtagaggaagtgagactgctaatgttcaagatggctggattctggaagaattgggtcctctttcacagctgcggcagctccatatgatcaaacttgagggagcggctcctccttgcagcagcagagattcattgctaacagacaaaaagcatctcaaatttctagagctgtgctgcagtgaaccaacgaatgaagcatacactgtggaagatgttagcaatattggcaagatctttgaggagctaacccctccgcgcaatctggaagagctagttattttgggattctttggttggaggtaccctacatggctagatacaacccatttgtgttcactgaaactcctgaaactcgaggcgtgcagattctgcgagcaacttcctccactcgggcagctacccaacctggcatgcctacaaattgcgggtgcaaccactgtcaccaagattggacctgaatttcttggctttggggtgctgggtaatcttggatccacagaagatgtagttgcctttcccaaacttgaatacttgaccatcaggtgtctgcccaactgggacgaatggtcctttttcagcgaagaagaagaagaaaatgttgctgctgctgccgttgttgctcgtccaaggaagcagcggctgctgccatgcttgaatgtgttaatccttgaacactgccccaaactgaggggtctcccacgacagcttggaagggaggccgtaagcttgacggacctcattataagagaagcaaaatccacgaagatggtggaagacctcccattcctttctgattgtctttcgatcgaaggatgtgaagcccttgagagggtctccaacattccccaagtgagagagctgcatttacatggctgtccaaactttaagtgtgttgaggatgtgagcaatcttcagggattatgcgtggatgaatcaattaaagagatccctagtgttcttgggcttctagagaaaggctggtgtggagacgagctggatgttcacgtggtgcgtaatcttgagaaacgaggcgttgctatcatctcataa
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| Protein seq | MASLLDSLVRSCAQKLQDVIMEEAILVLGVKEELRELQRRMYQIQCFLNDVEQKRTEESSVNNWLRNLKDAMHNADDIVDLARFEGSKLLAQSPLLPSSSSRNLTGCTGLSIFSCLPTIRRRHEIAIRIRDFNAELDKILKLGKTLFKIRTPPAQVPSVKQKKTCQLVEPNLVGKEILQASTRLVELLLAHKEKKPYKIGILGTGGIGKTTLAQKIYNGHKVKETFSKRAWVCVSQTYSEDEILKEILNGFEVHQEQGETFGKLISKLAKAVEGTCFMIVLDDVWHHDVWTNLLRTPLNAAASGVIIVTSRHDTVPQVIGVDYVHGVKLMSKDLAWELLWKSMNINEEKEVQHLKDIGMEIVSKCGHLPLAIKVTASVLATKDRTERHWRKVINKSAWFMDKLPDNLRGALFLSYDELSRQLKQCFLYCVLFPEDYKMFRDDLIRCWVAEGFVEEQDGQLLEETAEEYYDELIHRNLLQPTCRCFDHHLVRMHTLLRQLAQHLSGDEIFCGDTKSLETKSLSKIQRVTIFTEKDYLVIPDVGKERTMRTRTLTISHAKLPRVEDTIFKRFPHIRVLDLTGSKLQCIPSCIGDLIHLRLVDLDQTDISCLPESIGCLQNLQILNLQRCGALHSLPLAITKLRNLRRLGLNGTPINEVPKGIGKLKFLNDLEAFPIGRGSETANVQDGWILEELGPLSQLRQLHMIKLEGAAPPCSSRDSLLTDKKHLKFLELCCSEPTNEAYTVEDVSNIGKIFEELTPPRNLEELVILGFFGWRYPTWLDTTHLCSLKLLKLEACRFCEQLPPLGQLPNLACLQIAGATTVTKIGPEFLGFGVLGNLGSTEDVVAFPKLEYLTIRCLPNWDEWSFFSEEEEENVAAAAVVARPRKQRLLPCLNVLILEHCPKLRGLPRQLGREAVSLTDLIIREAKSTKMVEDLPFLSDCLSIEGCEALERVSNIPQVRELHLHGCPNFKCVEDVSNLQGLCVDESIKEIPSVLGLLEKGWCGDELDVHVVRNLEKRGVAIIS |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0023790 | OsKeNa_11g0023790.01 | Chr11 | 28844286 | 28847497 | + | NAM | ||
| CDS seq | atggctagcttgctagattctctggttagatcatgtgcccaaaagctgcaggatgtcattatggaggaggcaattctggttctaggggtaaaagaagaactccgagaactacagcgaagaatgtatcaaatacaatgctttcttaatgatgttgagcaaaagaggacagaggagtcatctgttaataactggcttcgtaatctgaaagatgccatgcataatgctgatgatattgtagacttggctaggttcgaaggaagcaagctactagcacaaagtcctttgttgccatcttcatcatcaagaaacttaactggatgtactggcctttcgattttctcttgccttcctactattcggcggcgccatgagatcgctatccggattagagacttcaatgctgaacttgacaagattttaaagcttggtaaaacgctttttaagattaggacaccgcctgcacaagttccgagtgtgaagcaaaagaaaacatgccaacttgtggaacctaatcttgtagggaaggaaattttacaggcttccacacgattggtagaactgcttcttgcacacaaggaaaagaagccctacaagattggtattcttggaacaggagggattggaaaaacaactctagctcaaaaaatatataatggccacaaagtaaaagaaacctttagcaagcgtgcttgggtttgtgtatctcagacgtattctgaagatgaaattttgaaagaaattctaaatggttttgaggtacatcaagagcagggtgaaactttcggaaagctcataagtaagcttgctaaagccgttgaagggacatgtttcatgattgttttggatgatgtttggcatcatgatgtgtggactaatctactaaggactccattaaatgctgctgcttctggagtaattatagttacaagtcgacatgacacagtgccacaggtaattggggtggattatgtgcatggagttaaattgatgtcaaaagacctagcatgggagctactttggaagagtatgaacattaatgaagagaaagaagtgcaacacctaaaagatattgggatggagatcgtttctaaatgtggccaccttcctctcgcaatcaaagttactgctagtgttctagcaactaaagatagaactgagaggcattggagaaaggttataaacaaaagtgcttggtttatggacaagcttcctgataatctcagaggagctttgtttctgagttatgacgagctatcacggcagctgaagcaatgttttctctattgtgtgttgtttccagaagattataaaatgttccgtgatgatttgattaggtgttgggttgctgaaggttttgtggaagaacaagatgggcaacttctagaagagacagccgaagaatattacgacgagttgatacataggaatctccttcaaccaacatgtagatgttttgaccatcatttagtaagaatgcatactcttttaagacagcttgctcaacatttgtcaggagatgaaattttttgtggagacacaaaatcactggagacaaaatctttgtcgaagatacaacgagttacaatatttactgaaaaagattatctagtaatccctgatgtaggcaaggagcggactatgagaacaaggactttgactattagtcatgccaagttaccaagagttgaagacacaatcttcaaaagatttccacatattcgagttctggatttgactggttcaaaattacagtgcattccaagttgcattggagatttgatccatctacgattggttgatcttgatcagactgacatatcttgtctcccagaatccattggttgtcttcaaaacctacagatattgaacttgcaacgctgtggtgccttacatagtcttcctttggccatcaccaaattgagaaatctaaggcggctcggtcttaatggtacaccaataaatgaggttccaaaagggataggcaaattgaaattcctcaatgatttagaagcatttccaattggtagaggaagtgagactgctaatgttcaagatggctggattctggaagaattgggtcctctttcacagctgcggcagctccatatgatcaaacttgagggagcggctcctccttgcagcagcagagattcattgctaacagacaaaaagcatctcaaatttctagagctgtgctgcagtgaaccaacgaatgaagcatacactgtggaagatgttagcaatattggcaagatctttgaggagctaacccctccgcgcaatctggaagagctagttattttgggattctttggttggaggtaccctacatggctagatacaacccatttgtgttcactgaaactcctgaaactcgaggcgtgcagattctgcgagcaacttcctccactcgggcagctacccaacctggcatgcctacaaattgcgggtgcaaccactgtcaccaagattggacctgaatttcttggctttggggtgctgggtaatcttggatccacagaagatgtagttgcctttcccaaacttgaatacttgaccatcaggtgtctgcccaactgggacgaatggtcctttttcagcgaagaagaagaagaaaatgttgctgctgctgccgttgttgctcgtccaaggaagcagcggctgctgccatgcttgaatgtgttaatccttgaacactgccccaaactgaggggtctcccacgacagcttggaagggaggccgtaagcttgacggacctcattataagagaagcaaaatccacgaagatggtggaagacctcccattcctttctgattgtctttcgatcgaaggatgtgaagcccttgagagggtctccaacattccccaagtgagagagctgcatttacatggctgtccaaactttaagtgtgttgaggatgtgagcaatcttcagggattatgcgtggatgaatcaattaaagagatccctagtgttcttgggcttctagagaaaggctggtgtggagacgagctggatgttcacgtggtgcgtaatcttgagaaacgaggcgttgctatcatctcataa
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| Protein seq | MASLLDSLVRSCAQKLQDVIMEEAILVLGVKEELRELQRRMYQIQCFLNDVEQKRTEESSVNNWLRNLKDAMHNADDIVDLARFEGSKLLAQSPLLPSSSSRNLTGCTGLSIFSCLPTIRRRHEIAIRIRDFNAELDKILKLGKTLFKIRTPPAQVPSVKQKKTCQLVEPNLVGKEILQASTRLVELLLAHKEKKPYKIGILGTGGIGKTTLAQKIYNGHKVKETFSKRAWVCVSQTYSEDEILKEILNGFEVHQEQGETFGKLISKLAKAVEGTCFMIVLDDVWHHDVWTNLLRTPLNAAASGVIIVTSRHDTVPQVIGVDYVHGVKLMSKDLAWELLWKSMNINEEKEVQHLKDIGMEIVSKCGHLPLAIKVTASVLATKDRTERHWRKVINKSAWFMDKLPDNLRGALFLSYDELSRQLKQCFLYCVLFPEDYKMFRDDLIRCWVAEGFVEEQDGQLLEETAEEYYDELIHRNLLQPTCRCFDHHLVRMHTLLRQLAQHLSGDEIFCGDTKSLETKSLSKIQRVTIFTEKDYLVIPDVGKERTMRTRTLTISHAKLPRVEDTIFKRFPHIRVLDLTGSKLQCIPSCIGDLIHLRLVDLDQTDISCLPESIGCLQNLQILNLQRCGALHSLPLAITKLRNLRRLGLNGTPINEVPKGIGKLKFLNDLEAFPIGRGSETANVQDGWILEELGPLSQLRQLHMIKLEGAAPPCSSRDSLLTDKKHLKFLELCCSEPTNEAYTVEDVSNIGKIFEELTPPRNLEELVILGFFGWRYPTWLDTTHLCSLKLLKLEACRFCEQLPPLGQLPNLACLQIAGATTVTKIGPEFLGFGVLGNLGSTEDVVAFPKLEYLTIRCLPNWDEWSFFSEEEEENVAAAAVVARPRKQRLLPCLNVLILEHCPKLRGLPRQLGREAVSLTDLIIREAKSTKMVEDLPFLSDCLSIEGCEALERVSNIPQVRELHLHGCPNFKCVEDVSNLQGLCVDESIKEIPSVLGLLEKGWCGDELDVHVVRNLEKRGVAIIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.392288 | 0.0 | 0.414043 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676200 | SBH | 0.035527 | 0.072868 | 0.057889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45160 | SBH | 0.0 | 0.000000 | 0.259605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023760 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023450 | SBH | 0.000000 | 0.906361 | 0.296845 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023440 | RBH | 0.099166 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023010 | SBH | 0.279679 | 0.317584 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023710 | SBH | 0.000000 | 0.469667 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0429900 | RBH | 0.5647775 | 0.113198 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023960 | SBH | 0.470954 | 0.700124 | 2.179529 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023770 | SBH | 0.0 | 0.063418 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023820 | SBH | 0.957821 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023400 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022990 | SBH | 1.870009 | 0.0 | 3.727034 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023540 | RBH | 0.190865 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023600 | RBH | 0.277830 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023750 | SBH | 0.152510 | 4.768662 | 0.673288 |
