Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0008560 | OGI:08025500 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:8975830-8982105 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagagaggggcggagcgcggcggggagagaggggcggctggggtcggcggcgacgtgaatcgcggcgggggcggcgtgatggtggagatcggtggtgggctggcggcgcgtgagagggagagaagagagattagggctggggaggcgtgggctgggatgggggagggggcgcagttgagaggtgtgaggtggagaggatctgagcgttggattttacacagatatgatccgaaccgttccacgaggaatgaaaaactaagcgatgagtgaaactatttgtttaacaataaggtagataattctatttctaaacatgtacatgcacaggacaacgtcaatttctcaatctaatgcagtaatgcctaacaaaataaatggaccttttgcaaccttgtttctagcaataacatccacaagttagtagcacggtaatgtaaactcatttatttgtgaaataatagcaattttttaggtctattagcttgctatattcagattatacttaaaaaaagtgtaacaatgatttgtaaaagcaaaataacatattttgaaccatacttaataaatatgtcaaacattaatacaaagtaacaaaactcaatccaatggcctattattttgttggacattatgttatggaacaacgcatgcacttgagcatcttgtctacggattgaattatggatttggcgtgcttatatttggaattaaactgatacatgtgcttacaggtaaaataatcggcaattaatgtctccatattactatgactgtaatcttgtttgtccaatgtcagatcattcggtgctcaaagacgcttggcctcgagggctacaggaggtggggccagtaacggaaattttagtacgacgcaaaatagggtagtgcaaatttggctgtagatacactaatgcataaatgatttttatagacgagaccctttgtagatggtagacagaactggtcatgtttgcaaaaaatcgacctcccatttttacatacggctccttaaaaggaccacacgtaaaaatgattctcgcattctagtctcttaagggtccgcatacaaaaataaacctatttttatatgcggaaccttaacgatctgcctaaagtccaagttacctcttcttttccctcctcaaacacttcaaaatttttcattcttatcctctctcacttactctcctcattatttcaaccttattaatcctctcccctctctctctcagctcatctcctatctcactgagagggcggtgccacggctttagtgactcaccgcatggtggcggcagcaggaggcacctcggcggacgccatgatcgacgggaagcaccttgggtgcggggtggcggcgagtacctcggcggaaggcggcggccggatctgccttcgctggccccgcaacggccggatccgcaagcaccggccccgcgaccgccgacgacttcatcgggcgctcgagtagcagcgggcgtggcaggcggtgcctcgggcgcagggcagcgttgagcggctcggcagacgatggtgaccagatccgccttcgccatgcccgcgacgaccagatccacaggcgccggcttgatccgccggcgtcggcgctgcgaccaccggacccgcatcgctgccgccgtgattataggctgggttttgttttttttattttatttttcctggatttttatttttacgtgcggatgcgctacctttacatataaatcagatttttgcagatcatttgggtcagccttccacacttaaaaataggttttgggccggctggaaattttttttttacgagtggtattacaatggatatctgcatcttcagataggtagaaactaaatgaatattgtgtgcgcaagaacagcagttaaatatattaaccgccgactgttacagttggcaccgcaagatcgaggagttgacgccagtagcctcctcgacatcaacctgaaggtcatgtggtaacctcaataaatgagaattggttggcggcgccaaaaaaagatgcaactcgcaacaggcacagcattggggagcatgcatgcgctctgcgtcaacggatgcggcatccttgttgctgtgtttccctgccatatctcaactcctaattggttggggcttttctggtaggcctccattgtactcctttttacgtctaccgtgttaacagccgttctgtgtcacatcagaattaaggtggaaacaacgcaatttaggacattaacagaaaaatggtggcaaacctttaattggtggcgggaagaaataactgagttcggagaccttgatgaatccaaggatcaatcttggatgatacatcggcgccaacattcagaaactatgatgaatccaaggatccaaccgatggcctaggaagaaatcaattagaagatgtaagatctatttgttctcctttacacttgttaaattatttgcatctaagttgaattgtctaattggacaactctcataattccgatcaagtgtatgtgcatcagaaccactgaaatggcaattttattaatattctttttattgttttcatttttatgggtaatattaccacccaataaaattaggatcaaggaaaaaatgaaacttctgatgcaaccaaatctatggaagacaaggtgccaaaggtcggaatgaaatttaactctgaacaagaagcttatgacttctataatgcttatgctggtgaaaaaggtttcaacattagaagaagcagctatcgatcatgtgggaaataccaaaattattaaaaacaagacattttgttgttcttatcaaggtattttcttcattttttagtagttacattaacgttcaatcagagttattttatttcagttagttcattgaaataataggtactagaggtattgataaaagagcagaagctacaggctatggtgatagttttagtaagccagaaactcaatgcaagtgtcaagcatgtatgaagataagtctcatagatggattatattctgtctaccactttgtgcctgaacatagtcataatcttgcaacaaaaagccaggctcatcagttaagatcacaaaggaagataaatgaagctcaggttgcaagtgttgaagtcgcaaaatctgtaggcatttctactaaagaagccattgatttgatggcaaaacaagcatgtggatttgagaatctcggctttactagtgttgacatgaagaacaagttatactcaaagagatcactgcagacaaaacaaggtgatgcaggaggagttttggaatatatggagaagaaagcatcagaagatgtaagtttttctattctattcaggttgacgaggatgatttaataacaaacattttctgggccgactctaaaatggtttctgactatgaagattttggtgatgttgtttgctttgacacaaaatatagaaaattggatgatggacgtccttttggtttgctagcttgtaggagtgaataatcataagaagactactgtttttggtgctgcgcttctataggatgaggctgctaatagttttgtttggttatttaatacttttctaaatgttatgtcagggaagaagcaaaaacaattttgacaaatgaagatgcagccatggctaaagcaatcaaaatagtatttcaaggaactcatcatcggatatctgtgtggcatatgaatcagaatgctgacttccagaactgcatatatgacggtgcgggcttcccctaccgtggttctttcaaaaaaaaaagaagaggaagaagaatttatatacgtatggaaccaactacttgacaaatatgagctgcagcaaaatacatggttgcgacggctttttgataaaaggcaccaatgggcactagtatatgggcgaaacacattttctgctgatacgagtaccacacaaagaaatgaaagcttgaataatcaattaaaaggttacattagtgtaaagtatgacatgcttactttttttgagcactttgacagattggtgggagataagagaaatgaggaggtgatttcaaagcaacacatactacaccaaagctaaaggcagagttgagaatactgagagatatggcagaagtttatactctagcagtcttaagatatttgcggaagaagtaatgcagtgtttgaattgtgacatattctactgcggtgatgttgatgcagaaaaggtgtacaaaataaaggttagtggaaagaatcatgaacatgttgttaaattctcaccgttggaatctactgttaagtgcagttgcaagaagtttgaattcgtcggcatcctgtgctctcatgcattgaaaatacttgacatcaacaatatcaaatcagtttcgcaatagtatatattaaaaagatggacaattgatgcaaaagtactacgtgtaagtggaagtagcaatatgcatgatgatcctagaattaagttatcagatcggtactcctcattgtgcaaaatgtttgttaaaatagcttgtcgagttgcaaaatctgaagaaacatactccatgtcaactaactgtgctgaaaaattggcagaagatatagagaacttcttgaaaattagaggtgatccagatttagacagctccccttCcccacaaggtttgttttttctatacaataattattagtcatatgacaatatgaattatccaagtctaaactttctctattttagttgcaaaaggaaatcagatcatggctagtaaaccaaaaggcattaagctcaagagaaaggaaatttgtggttcagctagacctattggtggcttagagaaatcatctcagaacgggaaaaagaagaagaatgatgactccccagccgaggtagtagaacttcaacctgtgacagagatgcagccacagccatatgctacagtactggtatattgctcacataatttatctccaaaattttatgctcttgggtttcatgactgacctttcttacgcttatttttcttgtcctagggtaatctagaggttcccaatgaccaagcatttttacatgtatcacagtcagcgttctaattagcgggctatagcggttttgccgagcaacagctaggagaagtcaattttgcagctaagcttcgcgggccgctattagctgtatttagcccgacatagccgctaaacgggctgaatgagcggtcgctaaatgggctaaaaatgaagcctgcttcctacctaaggcccaaatacccctcctctctaactctaaccctaactctctctctctctctctctcctctctcccgatctcgcctaagaggagaagaaccggcggcggaggcaactgccggtccccatccccgctcctccgtcctcccctcatgcagcgacagtggatctaacccgcggcggcggcggcggctttcgtgctgctgctcccctgctgccggcggtggccacggttgctgctactcccctgcgccggcgcagcggtggctgctgctcccatgcgacgtcggctaccgcggctggtgctcccctgcggtgccggcggctgcagctgctgcttctgctcccttgtggcactggttgcggtcgctgctccccaacagagccggtggctgctgctgctcgttcttctccgagcagcagcgatggctctctattccctgagaagcggcagcagctccttcttccccaatcgagcaacaccactctgctctaatgacagataagattatttctcaattcgcaatgcactttatttatttctcaaatcgcaatgcactttatctggacctggaaagaacgagagcaattttgttgtcgttgttgttcgtcactttatcaggcttaatatgaataatctaaattgttgatgaattgttatgtgtatctgtgaaataatgcgtcaaaatttagtctacatgctgtcaaaattttcaacTttttttttaaaccgctaaatggcttagctgccgctatagcccgctatagcttctcttagctgttggagagttcaaccactaagaggcttagcccgctatttagaaccttgatcacagtactatgctgctttggatgcatcaacttcaaatcctactcgtgtctcaaatgactctagaaaatcaagggttgcaccagcaagggaggtcaattcaacaatttgacactcatttatacaatctgttcaattaatctagttacagtatcttgtctcaatgtagtattcatttctattttgcacagaaacattttattttcaatttactgaaatatacacttcagtgatctag
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| CDS seq | atggagagaggggcggagcgcggcggggagagaggggcggctggggtcggcggcgacgtgaatcgcggcgggggcggcgtgatggtggagatcggtggtgggctggcggcgcgtgagagggagagaagagagattagggctggggaggcgtgggctgggatgggggagggggcgcagttgagaggtactagaggtattgataaaagagcagaagctacaggctatggtgatagttttagtaagccagaaactcaatgcaagtgtcaagcatgtatgaagataagtctcatagatggattatattctgtctaccactttgtgcctgaacatagtcataatcttgcaacaaaaagccaggctcatcagttaagatcacaaaggaagataaatgaagctcaggttgcaagtgttgaagtcgcaaaatctgtaggcatttctactaaagaagccattgatttgatggcaaaacaagcatgtggatttgagaatctcggctttactaattggtgggagataagagaaatgaggagaaaaggtgtacaaaataaagcttgtcgagttgcaaaatctgaagaaacatactccatgtcaactaactgtgctgaaaaattggcagaagatatagagaacttcttgaaaattagaggtgatccagatttagacagctccccttCcccacaagttgcaaaaggaaatcagatcatggctagtaaaccaaaaggcattaagctcaagagaaaggaaatttgtggttcagctagacctattggtggcttagagaaatcatctcagaacgggaaaaagaagaagaatgatgactccccagccgaggtagtagaacttcaacctgtgacagagatgcagccacagccatatgctacagtactggagaagaaccggcggcggaggcaactgccggtccccatccccgctcctccgtcctcccctcatgcagcgacagtggatctaacccgcggcggcggcggcggctttcgtgctgctgctcccctgctgccggcggtggccacggttgctgctactcccctgcgccggcgcagcggtggctgctgctcccatgcgacgtcggctaccgcggctggtgctcccctgcggtgccggcggctgcagctgctgcttctgctcccttgtggcactggttgcggtcgctgctccccaacagagccggtggctgctgctgctctgatctag
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| Protein seq | MERGAERGGERGAAGVGGDVNRGGGGVMVEIGGGLAARERERREIRAGEAWAGMGEGAQLRGTRGIDKRAEATGYGDSFSKPETQCKCQACMKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTNWWEIREMRRKGVQNKACRVAKSEETYSMSTNCAEKLAEDIENFLKIRGDPDLDSSPSPQVAKGNQIMASKPKGIKLKRKEICGSARPIGGLEKSSQNGKKKKNDDSPAEVVELQPVTEMQPQPYATVLEKNRRRRQLPVPIPAPPSSPHAATVDLTRGGGGGFRAAAPLLPAVATVAATPLRRRSGGCCSHATSATAAGAPLRCRRLQLLLLLPCGTGCGRCSPTEPVAAAALI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0008560 | OsKeNa_08g0008560.02 | Chr08 | 8975830 | 8982105 | + | NAM | ||
| CDS seq | atggagagaggggcggagcgcggcggggagagaggggcggctggggtcggcggcgacgtgaatcgcggcgggggcggcgtgatggtggagatcggtggtgggctggcggcgcgtgagagggagagaagagagattagggctggggaggcgtgggctgggatgggggagggggcgcagttgagaggtactagaggtattgataaaagagcagaagctacaggctatggtgatagttttagtaagccagaaactcaatgcaagtgtcaagcatgtatgaagataagtctcatagatggattatattctgtctaccactttgtgcctgaacatagtcataatcttgcaacaaaaagccaggctcatcagttaagatcacaaaggaagataaatgaagctcaggttgcaagtgttgaagtcgcaaaatctgtaggcatttctactaaagaagccattgatttgatggcaaaacaagcatgtggatttgagaatctcggctttactaattggtgggagataagagaaatgaggagtcttaagatatttgcggaagaagtaatgcagtgtttgaattgtgacatattctactgcggtgatgttgatgcagaaaaggtgtacaaaataaagaacttcttgaaaattagaggtgatccagatttagacagctccccttCcccacaagttgcaaaaggaaatcagatcatggctagtaaaccaaaaggcattaagctcaagagaaaggaaatttgtggttcagctagacctattggtggcttagagaaatcatctcagaacgggaaaaagaagaagaatgatgactccccagccgaggtagtagaacttcaacctgtgacagagatgcagccacagccatatgctacagtactggagaagaaccggcggcggaggcaactgccggtccccatccccgctcctccgtcctcccctcatgcagcgacagtggatctaacccgcggcggcggcggcggctttcgtgctgctgctcccctgctgccggcggtggccacggttgctgctactcccctgcgccggcgcagcggtggctgctgctcccatgcgacgtcggctaccgcggctggtgctcccctgcggtgccggcggctgcagctgctgcttctgctcccttgtggcactggttgcggtcgctgctccccaacagagccggtggctgctgctgctctgatctag
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| Protein seq | MERGAERGGERGAAGVGGDVNRGGGGVMVEIGGGLAARERERREIRAGEAWAGMGEGAQLRGTRGIDKRAEATGYGDSFSKPETQCKCQACMKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTNWWEIREMRSLKIFAEEVMQCLNCDIFYCGDVDAEKVYKIKNFLKIRGDPDLDSSPSPQVAKGNQIMASKPKGIKLKRKEICGSARPIGGLEKSSQNGKKKKNDDSPAEVVELQPVTEMQPQPYATVLEKNRRRRQLPVPIPAPPSSPHAATVDLTRGGGGGFRAAAPLLPAVATVAATPLRRRSGGCCSHATSATAAGAPLRCRRLQLLLLLPCGTGCGRCSPTEPVAAAALI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0008560 | OsKeNa_08g0008560.01 | Chr08 | 8975830 | 8982105 | + | NAM | ||
| CDS seq | atggagagaggggcggagcgcggcggggagagaggggcggctggggtcggcggcgacgtgaatcgcggcgggggcggcgtgatggtggagatcggtggtgggctggcggcgcgtgagagggagagaagagagattagggctggggaggcgtgggctgggatgggggagggggcgcagttgagaggtactagaggtattgataaaagagcagaagctacaggctatggtgatagttttagtaagccagaaactcaatgcaagtgtcaagcatgtatgaagataagtctcatagatggattatattctgtctaccactttgtgcctgaacatagtcataatcttgcaacaaaaagccaggctcatcagttaagatcacaaaggaagataaatgaagctcaggttgcaagtgttgaagtcgcaaaatctgtaggcatttctactaaagaagccattgatttgatggcaaaacaagcatgtggatttgagaatctcggctttactaattggtgggagataagagaaatgaggagaaaaggtgtacaaaataaagcttgtcgagttgcaaaatctgaagaaacatactccatgtcaactaactgtgctgaaaaattggcagaagatatagagaacttcttgaaaattagaggtgatccagatttagacagctccccttCcccacaagttgcaaaaggaaatcagatcatggctagtaaaccaaaaggcattaagctcaagagaaaggaaatttgtggttcagctagacctattggtggcttagagaaatcatctcagaacgggaaaaagaagaagaatgatgactccccagccgaggtagtagaacttcaacctgtgacagagatgcagccacagccatatgctacagtactggagaagaaccggcggcggaggcaactgccggtccccatccccgctcctccgtcctcccctcatgcagcgacagtggatctaacccgcggcggcggcggcggctttcgtgctgctgctcccctgctgccggcggtggccacggttgctgctactcccctgcgccggcgcagcggtggctgctgctcccatgcgacgtcggctaccgcggctggtgctcccctgcggtgccggcggctgcagctgctgcttctgctcccttgtggcactggttgcggtcgctgctccccaacagagccggtggctgctgctgctctgatctag
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| Protein seq | MERGAERGGERGAAGVGGDVNRGGGGVMVEIGGGLAARERERREIRAGEAWAGMGEGAQLRGTRGIDKRAEATGYGDSFSKPETQCKCQACMKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTNWWEIREMRRKGVQNKACRVAKSEETYSMSTNCAEKLAEDIENFLKIRGDPDLDSSPSPQVAKGNQIMASKPKGIKLKRKEICGSARPIGGLEKSSQNGKKKKNDDSPAEVVELQPVTEMQPQPYATVLEKNRRRRQLPVPIPAPPSSPHAATVDLTRGGGGGFRAAAPLLPAVATVAATPLRRRSGGCCSHATSATAAGAPLRCRRLQLLLLLPCGTGCGRCSPTEPVAAAALI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0008560 | OsKeNa_08g0008560.03 | Chr08 | 8977068 | 8979583 | + | IsoSeq | ||
| CDS seq | atggtgaccagatccgccttcgccatgcccgcgacgaccagatccacaggcgccggcttgatccgccggcgtcggcgctgcgaccaccggacccgcatcgctgccgccgtgattataggctgggttttgttttttttattttatttttcctggatttttatttttacgtgcggatgcgctacctttacatataaatcagatttttgcagatcatttgggtcagccttccac
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| Protein seq | MVTRSAFAMPATTRSTGAGLIRRRRRCDHRTRIAAAVIIGWVLFFLFYFSWIFIFTCGCATFTYKSDFCRSFGSAFH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 8980041 | 8980402 | + | OsKeNa_08g0008560.01 | OsKeNa_08g0008560.02,OsKeNa_08g0008560.01 | All |
| A3 | Chr08 | 8979860 | 8980022 | + | OsKeNa_08g0008560.02 | OsKeNa_08g0008560.02,OsKeNa_08g0008560.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.981104 | 14.019254 | 12.747552 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0246800 | RBH | 1.870596 | 0.779017 | 0.608367 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g14880 | RBH | 0.660289 | 0.342443 | 0.404957 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0246800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008490 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003030 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008460 | RBH | 20.099354 | 76.088638 | 61.335793 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0141700 | RBH | 1.169226 | 3.71291 | 1.9623725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008470 | RBH | 0.476898 | 0.0 | 0.183978 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0135500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002840 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008210 | RBH | 0.0 | 5.754357 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008200 | RBH | 0.185315 | 2.133114 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008460 | RBH | 0.0 | 1.305191 | 1.161922 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008270 | RBH | 0.0 | 0.0 | 0.0 |
