Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0246800 | OGI:08025500 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:8969014-8970904 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTAGTGTAAAGTATGACATGCTTACTTTTTTTGAGCACTTTGACAGATTGGTGGGAGATAAGAGAAATGAGGAGGTGATTTCAAAGCAACACATACTACACCAAAGCTAAAGGCAGAGTTGAGAATACTGAGAGATATGGCAGAAGTTTATACTCTAGCAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTCTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAATAAAGGTTAGTGGAAAGAATCATGAACATGTTAAATTCTCACCGTTGGAATCTACTGTTAAGTGCAGTTGCAAGAAGTTTGAATTCGTCGGCATCCTGTGCTCTCATGCATTGAAAATACTTGACATCAACAATATCAAATCAGTTTCGCAATAGTATATATTAAAAAGATGGACAATTGATGCAAAAGTACTACGTGTAAGTGGAAGTAGCAATATGCATGATGATCCTAGAATTAAGTTATCAGATCGGTACTCCTCATTGTGCAAAATGTTTGTTAAAATAGCTTGTCGAGTTGCAAAATCTGAAGAAACATACTCCATGTCAACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAACTTCTTGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGGTTTGTTTTTTCTATACAATAATTATTAGTCATATGACAATATGAATTATCCAAGTCTAAACTTTCTCTATTTTAGTTGCAAAAGGAAATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTTCAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATGATGACTCCCCAGCCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGTATATTGCTCACATAATTTATCTCCAAAATTTTATGCTCTTGGGTTTCATGACTGACCTTTCTTACGCTTATTTTTCTTGTCCTAGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCACAGTCAGCGTTCTAATTAGCGGGCTATAGCGGTTTTGCCGAGCAACAGCTAGGAGAAGTCAATTTTGCAGCTAAGCTTCGCGGGCCGCTATTAGCTGTATTTAGCCCGACATAGCCGCTAAACGGGCTGAATGAGCGGTCGCTAAATGGGCTAAAAATGAAGCCTGCTTCTCTAACTCTAACCCTAACTCTCTCTCTCTCTCTCTCTCTCTCTCCCGATCTCGCCTAAGAGGAGAAGAACCGGCGGCGGAGGCAACTGCGCGGCGACGGAAGCGAGCAACGGCGGCCGCCGGTCCCCATCCCTGCTCCTCCGTCCTCCCCTCATGCAGCGACAGTGGATCTAACCCGCGGCGGCGGTGGCGGCTTTCGTGCTGCTGCTCCCCTGCTGCCGGCGGCGGCCACGGTTGCTGCTACTCCCCTGCGCCGGCGCAGCGGTGGCTGCTGCTCCCATGCGACGTCGGCTACCGCGGCTGGTGCTCCCCTGCGGTGCCGGCGGCTGCAGCTGCTGCTTCTGCTCCCTTGTGGCACTGGTTGCGGTCGCTGCTCCCCAACAGAGCCGGTGGCTGCTGCTGCTCGTTCTTCTCCGAGCAGCAGCGATGGCTCTCTATTCCCTGAGAAGCGGCAGCAGCTCCTTCTTCCCCAATCGAGCAACACCACTCTGCTCTAATGACAGATAAGATTATTTCTCAAATCGCAATGCACTTTATTTATTTCTCAAATCGCAATGCACTTTATCTGGACTTGGAAAGAACGAGAGCAATTTTGTTGTCGTTGTTGTTCGTCACTTTATCAGGCTTAATATGAATAATCTAAATTGTTGA
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| CDS seq | TATATATTAAAAAGATGGACAATTGATGCAAAAGTACTACGTGTAAGTGGAAGTAGCAATATGCATGATGATCCTAGAATTAAGTTATCAGATCGGTACTCCTCATTGTGCAAAATGTTTGTTAAAATAGCTTGTCGAGTTGCAAAATCTGAAGAAACATACTCCATGTCAACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAACTTCTTGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGTTGCAAAAGGAAATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTTCAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATGATGACTCCCCAGCCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCACAGTCAGCGTTCTAA
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| Protein seq | YILKRWTIDAKVLRVSGSSNMHDDPRIKLSDRYSSLCKMFVKIACRVAKSEETYSMSTNCAEKLAEDIENFLKIRGDPDLDSSPSPQVAKGNQIMASKPKGIELKRKEICGSARPIGGLEKSSQNGKKKKNDDSPAEVVELQPVTEMQPQPYATVLGNLEVPNDQAFLHVSQSAF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0246800 | OsNip_08t0246800-01 | Chr08 | 8969014 | 8970841 | + | RAP2018-11-26 | ||
| CDS seq | TATATATTAAAAAGATGGACAATTGATGCAAAAGTACTACGTGTAAGTGGAAGTAGCAATATGCATGATGATCCTAGAATTAAGTTATCAGATCGGTACTCCTCATTGTGCAAAATGTTTGTTAAAATAGCTTGTCGAGTTGCAAAATCTGAAGAAACATACTCCATGTCAACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAACTTCTTGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGTTGCAAAAGGAAATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTTCAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATGATGACTCCCCAGCCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCACAGTCAGCGTTCTAA
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| Protein seq | YILKRWTIDAKVLRVSGSSNMHDDPRIKLSDRYSSLCKMFVKIACRVAKSEETYSMSTNCAEKLAEDIENFLKIRGDPDLDSSPSPQVAKGNQIMASKPKGIELKRKEICGSARPIGGLEKSSQNGKKKKNDDSPAEVVELQPVTEMQPQPYATVLGNLEVPNDQAFLHVSQSAF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0246800 | OsNip_08t0246800-02 | Chr08 | 8970292 | 8970904 | + | RAP2018-11-26 | ||
| CDS seq | GAGGAGAAGAACCGGCGGCGGAGGCAACTGCGCGGCGACGGAAGCGAGCAACGGCGGCCGCCGGTCCCCATCCCTGCTCCTCCGTCCTCCCCTCATGCAGCGACAGTGGATCTAACCCGCGGCGGCGGTGGCGGCTTTCGTGCTGCTGCTCCCCTGCTGCCGGCGGCGGCCACGGTTGCTGCTACTCCCCTGCGCCGGCGCAGCGGTGGCTGCTGCTCCCATGCGACGTCGGCTACCGCGGCTGGTGCTCCCCTGCGGTGCCGGCGGCTGCAGCTGCTGCTTCTGCTCCCTTGTGGCACTGGTTGCGGTCGCTGCTCCCCAACAGAGCCGGTGGCTGCTGCTGCTCGTTCTTCTCCGAGCAGCAGCGATGGCTCTCTATTCCCTGAGAAGCGGCAGCAGCTCCTTCTTCCCCAATCGAGCAACACCACTCTGCTCTAA
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| Protein seq | EEKNRRRRQLRGDGSEQRRPPVPIPAPPSSPHAATVDLTRGGGGGFRAAAPLLPAAATVAATPLRRRSGGCCSHATSATAAGAPLRCRRLQLLLLLPCGTGCGRCSPTEPVAAAARSSPSSSDGSLFPEKRQQLLLPQSSNTTLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.870596 | 0.779017 | 0.608367 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0246800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008500 | RBH | 0.0 | 0.0 | 0.992499 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008560 | RBH | 0.981104 | 14.019254 | 12.747552 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003030 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008460 | RBH | 20.099354 | 76.088638 | 61.335793 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0141700 | RBH | 1.169226 | 3.71291 | 1.9623725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008470 | RBH | 0.476898 | 0.0 | 0.183978 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0135700 | RBH | 8.1154545 | 65.2703205 | 35.440525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002840 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008210 | RBH | 0.0 | 5.754357 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008200 | RBH | 0.185315 | 2.133114 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008460 | RBH | 0.0 | 1.305191 | 1.161922 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008270 | RBH | 0.0 | 0.0 | 0.0 |
