Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0002840 | OGI:08025500 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:2303836-2306724 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccaaacaacagcatgattcctccatcagaggcatcacaactgcatgatgcaggagcaagtcccatgttcttggacaatacatctgctacaacgacgtcattcacaaatcttgttgagcctaatgattcatccgctggcctgggaatgaagcaaatagaaacggtaagatcaatatgttctgctctacattttgttaaattagttgaatctgagttgaattttctcataaaccaatttgatgtgaaatattataataaataaaatcaggatcagggagcaaatgaagattctcaaaccagaaaagcttcagaaaaaatgacgccaaaggtcggaatgaaatttaactctgaacaagaagcttatgacttttacaatgcatatgcttctgagattggtttcagcattagaagaagcagctaccattatatgggaaatacaaaaataataaagaataggacattctgttgttctcgtgaaggtattttcttcatgtcattttactgtgacattaaatttttatagtatattagattttaaataagttcattgtataacaggaactagaggcgttgataaaagaacagaagctttaggctatggtaatagttttaacagaccagaaactcggtgcaagtgtcaagcatgtatgaagataagtcttatagatggattctatcaggtctaccactttgtgcctgaacatagccatattcttgccactaaaagtcaagctcaccagttaagatcacaaaggaaggtaaatgaagctcaggttgcaagtgttgaagttgcaaaatcagtaggcatttcaactaaagcagttgttgacctgttggcaaaacaatcatgtggatatgagaatcttggcttcactcatgttgacatgaagaataagttatactcaaaaaggtcgctgcagacaaaacaaggtgacaccggaggagtgttagaatatatggagaagaaatcatcagaagatgtcaagtttttctattctattcaggtcgatgaggatgatttaataacaaatattttttgggctgactctaaaatgattgctgattatgaagactttggggatgttgtttgcTttgacacaacatacaggaaattggatgatggacgcccttttggtttgcttgtaggagtgaataatcataagaagactacagtttttggtgctgcacttttatatgatgagagtgctgatagttttgtttggttatttaatacttttctaaatgttatgtcaggaaagaagccaaaaacaattttgacagatgaagacgcagccatggctaaagcaatcaaattagtttaaggaactcatcatcagatatgtgtatggcagatgaatcaaaatgcctgcaagcaccttgctgggtgtgttaaggattataagaaatttaatagtgactttcagaattgcatatatgatcaagaggaggaggaagaatttataaaagcatggcatcaattgcttgacaaatatgagctacaacagaataaatggttgcatcggaTttttgacaaacgacatcaatgggcactagtatatggccgaaacacattctctgctgatatgagtaccacccaaagaaatgaaagttttaacaatgaattaaagggttatattagtgtgaaatatgacatgcttactttttttgagcacttcgacaggttgttgggagataaaagatatgaagaggtaaagtatgattttagagcaacacaaagtacaccaaggccaaaagcagagttgagaatattacgagatgtagtagaggtttatactccagcagtatataagatttttgaggaagaagtaatgcagactttaaattgtgatatattctactgtggtgatgttgatgaacaaaagttgtataaaataaagtctcatggtaagcatcatgaacatgttgttaaattctcaccattggaatctagtgtcaaatgcagctgcaagaagtttgaatttgctggtatcctgtgctctcatgccctgaaagtacttgacatcaataacatcaaatcggttcctcaaatgtatatactaaaatgatggacaattgatgcaaaagtactacatataagtggcagtggtaacacacacgatgatcctagaataaagttatcagatcgatacttctcattgtgcagaatgttcgttagaattgcttcccgagctgtagagtctgaagaaacatattccatatctactaattgtgctcaaaaattggcagaagacatagagaaatgcttgaaaatcagatgcaatccagatttagagacctcgtcatctccacaaggttcgtttaacagttctataaagtaattattagtcctatgatcggatcacagcttttttttaaatatgcatgtcgtaatttgtctttgcaggtgcgaaagaaaatcagaagcctaggaagccattaggcattaagctcaagaaaaaggaaattcgtggatcagcaagacctattggcggcttagataaagcttcatcaaggaggaaaagaaagaagatcaatgatgttccagcccaatcaccgcatcctcaacctgtagagatgcaagcacaaccacaagcagtacatactacagtaatggtatactcagcacataattgtttttcttaaaagaaactgcttgcgttgattattgtcgttgatctttttccattactttttcttgtgctaggatcatctagaggttcccagtaaccacaattttttacacgtgtcagagtatagcgctgctCtggatgcatacacacatacttcagttcacactcctatgttaatgactcaacaaagtcaagggttgcatcaagggagaccgattcagcaatatgacactgattttcactacatgttcaattaa
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| CDS seq | atggtaatagttttaacagaccagaaactcggtgcaagtgtcaagcatgtctaccactttgtgcctgaacatagccatattcttgccactaaaagtcaagctcaccagttaagatcacaaaggaaggtaaatgaagctcaggttgcaagtgttgaagttgcaaaatcagtaggcatttcaactaaagcagttgttgacctgttggcaaaacaatcatgtggatatgagaatcttggcttcactcattatgattttagagcaacacaaagtacaccaaggccaaaagcagagttgagaatattacgagatgtagtagaggtttatactccagcagtatataagatttttgaggaagaagtaatgcagactttaaattgtgatatattctactgtggtgatgttgatgaacaaaagttaatgttcgttagaattgcttcccgagctgtagagtctgaagaaacatattccatatctactaattgtgctcaaaaattggcagaagacatagagaaatgcttgaaaatcagatgcaatccagatttagagacctcgtcatctccacaaggtgcgaaagaaaatcagaagcctaggaagccattaggcattaagctcaagaaaaaggaaattcgtggatcagcaagacctattggcggcttagataaagcttcatcaaggaggaaaagaaagaagatcaatgatgttccagcccaatcaccgcatcctcaacctgtagagatgcaagcacaaccacaagcagtacatactacagtaatggatcatctagaggttcccagtaaccacaattttttacacgtgtcagagtatagcgctgctCtggatgcatacacacatacttcagttcacactcctatgttaatgactcaacaaagtcaagggttgcatcaagggagaccgattcagcaatatgacactgattttcactacatgttcaattaa
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| Protein seq | MVIVLTDQKLGASVKHVYHFVPEHSHILATKSQAHQLRSQRKVNEAQVASVEVAKSVGISTKAVVDLLAKQSCGYENLGFTHYDFRATQSTPRPKAELRILRDVVEVYTPAVYKIFEEEVMQTLNCDIFYCGDVDEQKLMFVRIASRAVESEETYSISTNCAQKLAEDIEKCLKIRCNPDLETSSSPQGAKENQKPRKPLGIKLKKKEIRGSARPIGGLDKASSRRKRKKINDVPAQSPHPQPVEMQAQPQAVHTTVMDHLEVPSNHNFLHVSEYSAALDAYTHTSVHTPMLMTQQSQGLHQGRPIQQYDTDFHYMFN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002840 | OsLima_08g0002840.01 | Chr08 | 2303836 | 2304431 | + | NAM | ||
| CDS seq | atgccaaacaacagcatgattcctccatcagaggcatcacaactgcatgatgcaggagcaagtcccatgttcttggacaatacatctgctacaacgacgtcattcacaaatcttgttgagcctaatgattcatccgctggcctgggaatgaagcaaatagaaacggaactagaggcgttgataaaagaacagaagctttag
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| Protein seq | MPNNSMIPPSEASQLHDAGASPMFLDNTSATTTSFTNLVEPNDSSAGLGMKQIETELEALIKEQKL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002840 | OsLima_08g0002840.02 | Chr08 | 2304435 | 2306724 | + | NAM | ||
| CDS seq | atggtaatagttttaacagaccagaaactcggtgcaagtgtcaagcatgtctaccactttgtgcctgaacatagccatattcttgccactaaaagtcaagctcaccagttaagatcacaaaggaaggtaaatgaagctcaggttgcaagtgttgaagttgcaaaatcagtaggcatttcaactaaagcagttgttgacctgttggcaaaacaatcatgtggatatgagaatcttggcttcactcattatgattttagagcaacacaaagtacaccaaggccaaaagcagagttgagaatattacgagatgtagtagaggtttatactccagcagtatataagatttttgaggaagaagtaatgcagactttaaattgtgatatattctactgtggtgatgttgatgaacaaaagttaatgttcgttagaattgcttcccgagctgtagagtctgaagaaacatattccatatctactaattgtgctcaaaaattggcagaagacatagagaaatgcttgaaaatcagatgcaatccagatttagagacctcgtcatctccacaaggtgcgaaagaaaatcagaagcctaggaagccattaggcattaagctcaagaaaaaggaaattcgtggatcagcaagacctattggcggcttagataaagcttcatcaaggaggaaaagaaagaagatcaatgatgttccagcccaatcaccgcatcctcaacctgtagagatgcaagcacaaccacaagcagtacatactacagtaatggatcatctagaggttcccagtaaccacaattttttacacgtgtcagagtatagcgctgctCtggatgcatacacacatacttcagttcacactcctatgttaatgactcaacaaagtcaagggttgcatcaagggagaccgattcagcaatatgacactgattttcactacatgttcaattaa
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| Protein seq | MVIVLTDQKLGASVKHVYHFVPEHSHILATKSQAHQLRSQRKVNEAQVASVEVAKSVGISTKAVVDLLAKQSCGYENLGFTHYDFRATQSTPRPKAELRILRDVVEVYTPAVYKIFEEEVMQTLNCDIFYCGDVDEQKLMFVRIASRAVESEETYSISTNCAQKLAEDIEKCLKIRCNPDLETSSSPQGAKENQKPRKPLGIKLKKKEIRGSARPIGGLDKASSRRKRKKINDVPAQSPHPQPVEMQAQPQAVHTTVMDHLEVPSNHNFLHVSEYSAALDAYTHTSVHTPMLMTQQSQGLHQGRPIQQYDTDFHYMFN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0246800 | RBH | 1.870596 | 0.779017 | 0.608367 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0246800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008490 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003070 | RBH | 0.000000 | 0.566116 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003030 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008460 | RBH | 20.099354 | 76.088638 | 61.335793 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0036600 | RBH | 0.171915 | 0.6512375 | 2.43819 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002700 | RBH | 0.0 | 0.166112 | 0.533024 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0041100 | RBH | 1.2027945 | 1.129889 | 2.0226175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002680 | RBH | 0.000000 | 5.021750 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002790 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008270 | RBH | 0.0 | 0.0 | 0.0 |
