Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_08g0008490 | OGI:08025500 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr08:8796122-8797601 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTACTAGAGGTATTGATAAAAGAGCAGAAGCTACAGGCTATGGTGATAGTTTTAGTAAGCCAGAAACTCAATGCAAGTGTCAAGCATGTATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAGTGTTGACATGAAGAACAAGTTATACTCAAAGAGATCACTGCAGACAAAACAAGGTGATGCAGGAGGAGTTTTGGAATATATGGAGAAGAAAGCATCAGAAGATGTAAGTTTTTCTATTCTATTCAGGTTGACGAGGATGATTTAATAACAAACATTTTCTGGGCCGACTCTAAAATGGTTTCTGACTATGAAGATTTTGGTGATGTTGTTTGCTTTGACACAAAATATAGAAAATTGGATGATGGACGTCCTTTTGGTTTGCTAGCTTGTAGGAGTGAATAATCATAAGAAGACTACTGTTTTTGGTGCTGCGCTTCTATAGGATGAGGCTGCTAATAGTTTTGTTTGGTTATTTAATACTTTTCTAAATGTTATGTCAGGGAAGAAGCAAAAACAATTTTGACAAATGAAGATGCAGCCATGGCTAAAGCAATCAAAATAGTATTTCAAGGAACTCATCATCGGATATCTGTGTGGCATATGAATCAGAATGCTGACTTCCAGAACTGCATATATGACGGTGCGGGCTTCCCCTACCGTGGTTCTTTCAAAAAAAAAAAGAAGAGGAAGAAGAATTTATATATGTATGGAACCAACTACTTGACAAATATGAGCTGCAGCAAAATACATGGTTGCGACGGCTTTTTGATAAAAGGCACCAATGGGCACTAGTATATGGGCGAAACACATTTTCTGCTGATACGAGTACCACACAAAGAAATGAAAGCTTGAATAATCAATTAAAAGGTTACATTAGTGTAAAGTATGACATGCTTACTTTTTTTGAGCACTTTGACAGATTGGTGGGAGATAAGAGAAATGAGGAGGTGATTTCAAAGCAACACATACTACACCAAAGCTAAAGGCAGAGTTGAGAATACTGAGAGATATGGCAGAAGTTTATACTCTAGCAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTGTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAAGGTGTACAAAATAAAGGTTAGTGGAAAGAATCATGAACATGTTGTTAAATTCTCACCGTTGGAATCTACTGTTAAGTGCAGTTGCAAGAAGTTTGAATTCGTCAGCATCCTGTGCTCTCATGCATTGAAAATACTTGACATCAACAATATCAAATCAGTTTCGCAATAG
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| CDS seq | ATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAATTGGTGGGAGATAAGAGAAATGAGGAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTGTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAAGGTGTACAAAATAAAGGTTAGTGGAAAGAATCATGAACATGTTGTTAAATTCTCACCGTTGGAATCTACTGTTAAGTGCAGTTGCAAGAAGTTTGAATTCGTCAGCATCCTGTGCTCTCATGCATTGAAAATACTTGACATCAACAATATCAAATCAGTTTCGCAATAG
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| Protein seq | MKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTNWWEIREMRSLKIFAEEVMQCLNCDIFYCGDVDAEKVYKIKVSGKNHEHVVKFSPLESTVKCSCKKFEFVSILCSHALKILDINNIKSVSQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0008490 | OsAzu_08g0008490.01 | Chr08 | 8796122 | 8797601 | + | NAM | ||
| CDS seq | ATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAATTGGTGGGAGATAAGAGAAATGAGGAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTGTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAAGGTGTACAAAATAAAGGTTAGTGGAAAGAATCATGAACATGTTGTTAAATTCTCACCGTTGGAATCTACTGTTAAGTGCAGTTGCAAGAAGTTTGAATTCGTCAGCATCCTGTGCTCTCATGCATTGAAAATACTTGACATCAACAATATCAAATCAGTTTCGCAATAG
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| Protein seq | MKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTNWWEIREMRSLKIFAEEVMQCLNCDIFYCGDVDAEKVYKIKVSGKNHEHVVKFSPLESTVKCSCKKFEFVSILCSHALKILDINNIKSVSQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0166400 | SBH | 0.575565 | 0.658086 | 1.650285 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g14880 | RBH | 0.660289 | 0.342443 | 0.404957 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0166400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008560 | RBH | 0.981104 | 14.019254 | 12.747552 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017830 | SBH | 0.0 | 0.0 | 0.705016 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003030 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008460 | RBH | 20.099354 | 76.088638 | 61.335793 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002700 | RBH | 0.0 | 0.166112 | 0.533024 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0135600 | RBH | 7.3345165 | 82.9036405 | 46.684578 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002840 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008210 | RBH | 0.0 | 5.754357 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002680 | RBH | 0.000000 | 5.021750 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008750 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002790 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008450 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008260 | RBH | 0.0 | 0.0 | 0.0 |
