Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0017830 | OGI:08025500 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:22020286-22023240 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaatttaaatgggcaaacatgctatagggatatgtatcaaatgtctgtgcagtctcttcatgctgcatcccttgactttgttcagaagttctgaaataactagatgactgaagtaatgaagcaccttcaacatgatagtagtctggcatttgcatgtgattgtagttagtgggaatctctgaacgaccctgaatctgtataaggcaaataataatcagtaccactaataagagagtctcttttgccaagtgtgtgtgtgtatatatatatatatatcttgaatctactgacctgcatcatgttgtatggcagggatggtgttaccacctctgcttgtactggaaactttgatgtgtttgaatcactctttttctttttactccattgtgttgccttgtcaaaaccaccaattggtctcctcgacccacgaatggctttctccttaacctttatgcctcttgctttactcgggccaacattttcctccgtgcctatgataaaatatttttgagacagctaatttagattataacatagtagtcactagcataagtattgtttaactcagagtaggatacaaacatgatttatccaaatctggatcaggccttatactcaagtatttctccacatcttctgataacttttgtgcattgttggcagccattaagtatgttttagcaaacattctgcacaagtctctcctgcgtgttgataactttattttaggatcttcatgagtactgcacttgctctttatatgtagagattttgcatcaatggtccatgtttgtagtatgtattgcttaggaatttcttttatattgttaacatcaagtatcttcaatgcatggcaacataagattccgagaaattcaaacttcttgcagctgcacctgactttaccttctgttggagaaaattttacaacatgctcatggtgcttaccgtgaacttttaatttgtacaccatttcagcatcaatatcaccacagtagtataggtcacagttcaatgtttgcaacacttgttcctgaaacacttaaaatattgctggagtataaattcttgttgcttgccttaatattgtcaaatctgctttcggccatggtgtacattgtgttgtcttaaagtcatttttgacttcctcatatcttttgtctgacaacaacctgtcaaagtgttccaagaaggtaagtatgtcatatttcacactgatatagcccttcaattcattgttcatgctctcacttctctgtgttccactcatatcagtagaaaatgtgtttctcccatacactaatgcccattgctcttttttctgaaatagcctctcaagccatttgttctcctgcagatcatacttttcaagcactctattccatgcatttataaattcatcttcctcctctttgtcataaatacaattctgaaaatctgcattgaatttcttgtactccttcacaactccagcaaggtgtttgcaggcattctgggtcatatgccaaacacaaattctatgatgactttctggcatgactaacttgattgctttggccattgctgcgtcttcatcggtcaatatagtctgtggcttctttccagacatggcttttaaaaatgtcttgaaaagccaaacaaaactatcaacagtttcatcatacaaaagtgcagcaccaaaaacaacgcttttcttatgattatccacaccaacaagcaaaccaaatggacgaccatcatttagttttctatatgttgtgtcaaaacaaagaacatcaccaaaaacttcataatcagcaatcattttagaatcagtccagaaaatatttgttatcaagtcatcctcatcaacctgaatggaatagaaaaaattaacatcttccgatgattttttctccatatattccaagactccccctgtgtcaccttcgtttaccttcagtgacctctttgaatataatctattcttcatgtcttcacgagtaaatccaagattctcatatccacccgcttcttttgccattaaatcaatagtagccttattagaaatgtctactgattttgcattctcagcacttgccatctgtgcttcagttattttcctttgagatcttaagtagagggcctgacttccagtagcaagaatgtggttatgctcgtgcaagaattcatatatgcaatacaatccatcatccctaagacttatcttcatgcatgctcggcacatacatcgtgtttctggcctactaaaacactgaccgtaatttaaaatttggtcttctcttttattatgaccacgagtacctattattaaataaaactaactcagtatatgaattctatatgaacactgaactttgtaaatataagttggaactagtacctgcacgagaacaacaaaatgtctgattctttattatggtggaatctttcacataatggtaactgcttcttcgaatgctaaaacccatgtctcgagcataggcattatagaaatcatatgcctcttgttcactgttgaatttcataccgatgattggtgccttccctttggagggatctgcttgtggagtagcttcaattttactaggatcctgattaatataccagttttttatttgagacaaattagaaaagaagaaaaactttcatgaaacttacagaaaaaaaagggctaatagaaaagaagcaaaacttctatgagatttactgaacggagatatgatgtgcttgtagtgatcaagtctcaatgattactaataaaagaaagtgaaaacattatgaagtcttactgtctctaattccccttccaagttaccatgaaagcttgtccctggatgatgcagtacagacgttccagcagaggcagctggttccgtcggcatggttgtcacttgttcatgcagtgaatcggtgaccttgattgaccttggaagattagatagagaggccat
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| CDS seq | atggcctctctatctaatcttccaaggtcaatcaaggtcaccgattcactgcatgaacaagtgacaaccatgccgacggaaccagctgcctctgctggaacgtctgtactgcatcatccagggacaagctttcatggtactcgtggtcataataaaagagaagaccaaattttaaattacggtcagtgttttagtaggccagaaacacgatgtatgtgccgagcatgcatgaagataagtcttagggatgatggattgtattgcatatatgaattcttgcacgagcataaccacattcttgctactggaagtcaggccctctacttaagatctcaaaggaaaataactgaagcacagatggcaagtgctgagaatgcaaaatcagtagacatttctaataaggctactattgatttaatggcaaaagaagcgggtggatatgagaatcttggatttactcaaggtaaagtcaggtgcagctgcaagaagtttgaatttctcggaatcttatgttgccatgcattgaagatacttgatgttaacaatataaaagaaattcctaagcaatacatactacaaacatggaccattgatgcaaaatctctacatataaagagcaagtgcagtactcatgaagatcctaaaataaagttatcaacacgcaggagagacttgtgcagaatgtttgctaaaacatacttaatggctgccaacaatgcacaaaagttatcagaagatgtggagaaatacttgagcacggaggaaaatgttggcccgagtaaagcaagaggcataaaggttaaggagaaagccattcgtgggtcgaggagaccaattggtggttttgacaaggcaacacaatggagtaaaaagaaaaagagtgattcaaacacatcaaagtttccagtacaagcagaggtggtaacaccatccctgccatacaacatgatgcagattcagggtcgttcagagattcccactaactacaatcacatgcaaatgccagactactatcatgttgaaggtgcttcattacttcagtcatctagttatttcagaacttctgaacaaagtcaagggatgcagcatgaagagactgcacagacatttgatacatatccctatagcatgtttgcccatttaaattaa
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| Protein seq | MASLSNLPRSIKVTDSLHEQVTTMPTEPAASAGTSVLHHPGTSFHGTRGHNKREDQILNYGQCFSRPETRCMCRACMKISLRDDGLYCIYEFLHEHNHILATGSQALYLRSQRKITEAQMASAENAKSVDISNKATIDLMAKEAGGYENLGFTQGKVRCSCKKFEFLGILCCHALKILDVNNIKEIPKQYILQTWTIDAKSLHIKSKCSTHEDPKIKLSTRRRDLCRMFAKTYLMAANNAQKLSEDVEKYLSTEENVGPSKARGIKVKEKAIRGSRRPIGGFDKATQWSKKKKSDSNTSKFPVQAEVVTPSLPYNMMQIQGRSEIPTNYNHMQMPDYYHVEGASLLQSSSYFRTSEQSQGMQHEETAQTFDTYPYSMFAHLN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0017830 | OsCMeo_08g0017830.01 | Chr08 | 22020286 | 22023240 | - | NAM | ||
| CDS seq | atggcctctctatctaatcttccaaggtcaatcaaggtcaccgattcactgcatgaacaagtgacaaccatgccgacggaaccagctgcctctgctggaacgtctgtactgcatcatccagggacaagctttcatggtactcgtggtcataataaaagagaagaccaaattttaaattacggtcagtgttttagtaggccagaaacacgatgtatgtgccgagcatgcatgaagataagtcttagggatgatggattgtattgcatatatgaattcttgcacgagcataaccacattcttgctactggaagtcaggccctctacttaagatctcaaaggaaaataactgaagcacagatggcaagtgctgagaatgcaaaatcagtagacatttctaataaggctactattgatttaatggcaaaagaagcgggtggatatgagaatcttggatttactcaaggtaaagtcaggtgcagctgcaagaagtttgaatttctcggaatcttatgttgccatgcattgaagatacttgatgttaacaatataaaagaaattcctaagcaatacatactacaaacatggaccattgatgcaaaatctctacatataaagagcaagtgcagtactcatgaagatcctaaaataaagttatcaacacgcaggagagacttgtgcagaatgtttgctaaaacatacttaatggctgccaacaatgcacaaaagttatcagaagatgtggagaaatacttgagcacggaggaaaatgttggcccgagtaaagcaagaggcataaaggttaaggagaaagccattcgtgggtcgaggagaccaattggtggttttgacaaggcaacacaatggagtaaaaagaaaaagagtgattcaaacacatcaaagtttccagtacaagcagaggtggtaacaccatccctgccatacaacatgatgcagattcagggtcgttcagagattcccactaactacaatcacatgcaaatgccagactactatcatgttgaaggtgcttcattacttcagtcatctagttatttcagaacttctgaacaaagtcaagggatgcagcatgaagagactgcacagacatttgatacatatccctatagcatgtttgcccatttaaattaa
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| Protein seq | MASLSNLPRSIKVTDSLHEQVTTMPTEPAASAGTSVLHHPGTSFHGTRGHNKREDQILNYGQCFSRPETRCMCRACMKISLRDDGLYCIYEFLHEHNHILATGSQALYLRSQRKITEAQMASAENAKSVDISNKATIDLMAKEAGGYENLGFTQGKVRCSCKKFEFLGILCCHALKILDVNNIKEIPKQYILQTWTIDAKSLHIKSKCSTHEDPKIKLSTRRRDLCRMFAKTYLMAANNAQKLSEDVEKYLSTEENVGPSKARGIKVKEKAIRGSRRPIGGFDKATQWSKKKKSDSNTSKFPVQAEVVTPSLPYNMMQIQGRSEIPTNYNHMQMPDYYHVEGASLLQSSSYFRTSEQSQGMQHEETAQTFDTYPYSMFAHLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.705016 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0246800 | SBH | 1.870596 | 0.779017 | 0.608367 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g32440 | RBH | 0.332535 | 0.511212 | 0.338923 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0246800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018020 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017890 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003030 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0320800 | RBH | 0 | 0 | 0.011327 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002700 | SBH | 0.0 | 0.166112 | 0.533024 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0342200 | RBH | 0.006311 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002840 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008210 | SBH | 0.0 | 5.754357 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002680 | SBH | 0.000000 | 5.021750 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023880 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002790 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008450 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008260 | RBH | 0.0 | 0.0 | 0.0 |
