Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g14880 | OGI:08025500 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:8966297-8970997 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCTCCTATCACACTGAGAGGGCGGTGCCACGGCTTTAGTGACTCACCGCATGGTGGCGGCAGCAGGAGGCACCTCGGCGGACGCCATGATCGACGGGAAGCACCTTGGGCGCGGGGTGGCGGCGAGTACCTCGGCGGAAGGCGGCGGCCGGATCTGCCTTCGCTGGCCCCGCAACGGCCGGATCCGCAAGCACCGGCCCCGCGACCGCCGACGACTTCATCGGGCGCTCGAGTAGCAGCGGGCGTGGCGGGCGGTGCCTCGGGCGCAGGGCAGCGTTGAGCGGCTCGGCGGACGATGGTGACCAGATCCGCCTTCGCCATGCCCGCGACGACCAGATCCGCAGGCGCCGGCTTGATCCGCCGGCGTCGGCGCTGCGACCACCGGACCCGCATCGCTGCCGCCGTGATTATAGGCTGGGTTTTGTTTTTTTTATTTTATTTTTCCTGGATTTTTATTTTTACGTGCGGATGCGCTACCTTTACATATAAATCAGATTTTTGCAGATCATTTGGGTCAGCCTTCCACACTTAAAAATAGGTTTTGGGCCGGCTGGAAATTTTTTTTTTACGAGTGGTATTACAATGGATATCTGCATCTTCAGATAGGTAGAAACTAAATGAATATTGTGTGCGCAAGAACAGCAGTTAAATATATTAACCGCCGACTGTTACAGTTGGCACCGCAAGATCGAGGAGTTGACGACAGTAGCCTCCTCGACATCAACGTGAAGGTCATGTGGTAACCTCAATAAATGAGAATTGGTTGGCGGCGCCAAAAAAAGATGCAACTCGCAACAGGCACAGCATTGGGGAGCATGCATGCGCTCTGCGTCAACGGATGCGGCATCCTTGTTGCTGTGTTTCCCTGCCATATCTCAACTCCTAATTGGTTGGGGCTTTTCTGGTAGGCCTCCATTGTACTCCTTTTTACGTCTACCGTGTTAACGGCCGTTCTGTGTCACATCAGAATTAAGGTGGAAACAACGCAATTTAGGACATTAACAGAAAAATGGTGGCAAACCTTTAATTGGTGGCGGGAAGAAATAACTGAGTTCGGAGACCTTGATGAATCCAAGGATCAATCTTGGATGATACATCGGCGCCAACATTCAGAAACTATGATGAATCCAAGGATCCAACCGATGGCCTAGGAAGAAATCAATTAGAAGATGTAAGATCTATTTGTTCTCCTTTACACTTGTTAAATTATTTGCATCTAAGTTGAATTGTCTAATTGGACAACTCTCATAATTCCAATCAAGTGTATGTGCATCGGAACCACTGAAATGGCAATTTTATTAATATTCTTTTTATTGTTTTCATTTTTATGGGTAATATTACCACCCAATAAAATTAGGATCAAGGAAAAAATGAAACTTCTGATGCAACCAAATCTATGGAAGACAAGGTGCCAAAGGTCGGAATGAAATTTAACTCTGAACAAGAAGCTTATGACTTCTATAATGCTTATGCTGGTGAAAAAGGTTTCAACATTAGAAGAAGCAGCTATCGATCATGTGGGAAATACCAAAATTATTAAAAACAAGACATTTTGTTGTTCTTATCAAGGTATTTTCTTCATTTTTTAGTAGTTACATTAACGTTCAATCAGAGTTATTTTATTTCAGTTAGTTCATTGAAATAATAGGTACTAGAGGTATTGATAAAAGAGCAGAAGCTGCAGGCTATGGTGATAGTTTTAGTAAGCCAGAAACTCAATGCAAGTGTCAAGCATGTATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAGTGTTGACATGAAGAACAAGTTATACTCAAAGAGATCACTGCAGACAAAACAAGGTGATGCAGGAGGAGTTTTGGAATATATGGAGAAGAAAGCATCAGAAGATGTAAGTTTTTCTATTCTATTCAAGTTGACGAGGATGATTTAATAACAAACATTTTCTGGGCCGACTCTAAAATGGTTTCTGACTATGAAGATTTTGGTGATGTTGTTTGCTTTGACACAAAATATAGAAAATTGGATGATGGACGTCCTTTTGGTTTGCTAGCTTGTAGGAGTGAATAATCATAAGAAGACTACTGTTTTTGGTGCTGCGCTTCTATAGGATGAGGCTGCTAATAGTTTTGTTTGGTTATTTAATACTTTTCTAAATGTTATGTCAGGGAAGAAGCAAAAACAATTTTGACAAATGAAGATGCAGCCATGGCTAAAGCAATCAAAATAGTATTTCAAGGAACTCATCATCGGATATCTGTGTGGCATATGAATCAGAATGCTGACTTCCAGAACTGCATATATGACGGTGGGGGCTTCCCCTACCGTGGTTCTTTCAAAAAAAAAGAAGAGGAAGAAGAATTTATATATGTATGGAACCAACTACTTGACAAATATGAGCTGCAGCAAAATACATGGTTGCGACGGCTTTTTGATAAAAGGCACCAATGGGCACTAGTATATGGGCGAAACACATTTTCTGCTGATACGAGTACCACACAAAGAAATGAAAGCTTGAATAATCAATTAAAAGGTTACATTAGTGTAAAGTATGACATGCTTACTTTTTTTGAGCACTTTGACAGATTGGTGGGAGATAAGAGAAATGAGGAGGTGATTTCAAAGCAACACATACTACACCAAAGCTAAAGGCAGAGTTGAGAATACTGAGAGATATGGCAGAAGTTTATACTCTAGCAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTCTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAATAAAGGTTAGTGGAAAGAATCATGAACATGTTAAATTCTCACCGTTGGAATCTACTGTTAAGTGCAGTTGCAAGAAGTTTGAATTCGTCGGCATCCTGTGCTCTCATGCATTGAAAATACTTGACATCAACAATATCAAATCAGTTTCGCAATAGTATATATTAAAAAGATGGACAATTGATGCAAAAGTACTACGTGTAAGTGGAAGTAGCAATATGCATGATGATCCTAGAATTAAGTTATCAGATCGGTACTCCTCATTGTGCAAAATGTTTGTTAAAATAGCTTGTCGAGTTGCAAAATCTGAAGAAACATACTCCATGTCAACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAACTTCTTGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGGTTTGTTTTTTCTATACAATAATTATTAGTCATATGACAATATGAATTATCCAAGTCTAAACTTTCTCTATTTTAGTTGCAAAAGGAAATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTTCAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATGATGACTCCCCAGCCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGTATATTGCTCACATAATTTATCTCCAAAATTTTATGCTCTTGGGTTTCATGACTGACCTTTCTTACGCTTATTTTTCTTGTCCTAGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCACAGTCAGCGTTCTAATTAGCGGGCTATAGCGGTTTTGCCGAGCAACAGCTAGGAGAAGTCAATTTTGCAGCTAAGCTTCGCGGGCCGCTATTAGCTGTATTTAGCCCGACATAGCCGCTAAACGGGCTGAATGAGCGGTCGCTAAATGGGCTAAAAATGAAGCCTGCTTCTCTAACTCTAACCCTAACTCTCTCTCTCTCTCTCTCTCTCTCTCCCGATCTCGCCTAAGAGGAGAAGAACCGGCGGCGGAGGCAACTGCGCGGCGACGGAAGCGAGCAACGGCGGCCGCCGGTCCCCATCCCTGCTCCTCCGTCCTCCCCTCATGCAGCGACAGTGGATCTAACCCGCGGCGGCGGTGGCGGCTTTCGTGCTGCTGCTCCCCTGCTGCCGGCGGCGGCCACGGTTGCTGCTACTCCCCTGCGCCGGCGCAGCGGTGGCTGCTGCTCCCATGCGACGTCGGCTACCGCGGCTGGTGCTCCCCTGCGGTGCCGGCGGCTGCAGCTGCTGCTTCTGCTCCCTTGTGGCACTGGTTGCGGTCGCTGCTCCCCAACAGAGCCGGTGGCTGCTGCTGCTCGTTCTTCTCCGAGCAGCAGCGATGGCTCTCTATTCCCTGAGAAGCGGCAGCAGCTCCTTCTTCCCCAATCGAGCAACACCACTCTGCTCTAATGACAGATAAGATTATTTCTCAAATCGCAATGCACTTTATTTATTTCTCAAATCGCAATGCACTTTATCTGGACTTGGAAAGAACGAGAGCAATTTTGTTGTCGTTGTTGTTCGTCACTTTATCAGGCTTAATATGAATAATCTAAATTGTTGATGAATTGTTATGTGTATCTGTGAAATAATGTGTCAAAATTTAGTCTACATGCTGTCAAAATTTTCAACTTTTTTTTAAACCGCTAAATGGCTT
More
|
||||||||||
| CDS seq | ATGACTTCTATAATGCTTATGCTGGTGAAAAAGGTTTCAACATTAGAAGAAGCAGCTATCGATCATGTGGGAAATACCAAAATTATTAAAAACAAGACATTTTGTTGTTCTTATCAAGGTACTAGAGGTATTGATAAAAGAGCAGAAGCTGCAGGCTATGGTGATAGTTTTAGTAAGCCAGAAACTCAATGCAAGTGTCAAGCATGTATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAGTGTTGACATGAAGAACAAGTTATACTCAAAGAGATCACTGCAGACAAAACAAGGTGATGCAGGAGGAGTTTTGGAATATATGGAGAAGAAAGCATCAGAAGATGTAAGTTTTTCTATTCTATTCAAGTTGACGAGGATGATTTAA
More
|
||||||||||
| Protein seq | MTSIMLMLVKKVSTLEEAAIDHVGNTKIIKNKTFCCSYQGTRGIDKRAEAAGYGDSFSKPETQCKCQACMKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTSVDMKNKLYSKRSLQTKQGDAGGVLEYMEKKASEDVSFSILFKLTRMI |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g14880 | LOC_Os08g14880.1 | Chr08 | 8967291 | 8970997 | + | MSU_osa1r7 | ||
| CDS seq | ATGACTTCTATAATGCTTATGCTGGTGAAAAAGGTTTCAACATTAGAAGAAGCAGCTATCGATCATGTGGGAAATACCAAAATTATTAAAAACAAGACATTTTGTTGTTCTTATCAAGGTACTAGAGGTATTGATAAAAGAGCAGAAGCTGCAGGCTATGGTGATAGTTTTAGTAAGCCAGAAACTCAATGCAAGTGTCAAGCATGTATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAGTGTTGACATGAAGAACAAGTTATACTCAAAGAGATCACTGCAGACAAAACAAGGTGATGCAGGAGGAGTTTTGGAATATATGGAGAAGAAAGCATCAGAAGATGTAAGTTTTTCTATTCTATTCAAGTTGACGAGGATGATTTAA
More
|
|||||||
| Protein seq | MTSIMLMLVKKVSTLEEAAIDHVGNTKIIKNKTFCCSYQGTRGIDKRAEAAGYGDSFSKPETQCKCQACMKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTSVDMKNKLYSKRSLQTKQGDAGGVLEYMEKKASEDVSFSILFKLTRMI |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g14880 | LOC_Os08g14880.2 | Chr08 | 8967291 | 8970997 | + | MSU_osa1r7 | ||
| CDS seq | ATGACTTCTATAATGCTTATGCTGGTGAAAAAGGTTTCAACATTAGAAGAAGCAGCTATCGATCATGTGGGAAATACCAAAATTATTAAAAACAAGACATTTTGTTGTTCTTATCAAGGTACTAGAGGTATTGATAAAAGAGCAGAAGCTGCAGGCTATGGTGATAGTTTTAGTAAGCCAGAAACTCAATGCAAGTGTCAAGCATGTATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAGTGTTGACATGAAGAACAAGTTATACTCAAAGAGATCACTGCAGACAAAACAAGGTGATGCAGGAGGAGTTTTGGAATATATGGAGAAGAAAGCATCAGAAGATGGAAGAAGCAAAAACAATTTTGACAAATGA
More
|
|||||||
| Protein seq | MTSIMLMLVKKVSTLEEAAIDHVGNTKIIKNKTFCCSYQGTRGIDKRAEAAGYGDSFSKPETQCKCQACMKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTSVDMKNKLYSKRSLQTKQGDAGGVLEYMEKKASEDGRSKNNFDK |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g14880 | LOC_Os08g14880.3 | Chr08 | 8966297 | 8970997 | + | MSU_osa1r7 | ||
| CDS seq | ATGACTTCTATAATGCTTATGCTGGTGAAAAAGGTTTCAACATTAGAAGAAGCAGCTATCGATCATGTGGGAAATACCAAAATTATTAAAAACAAGACATTTTGTTGTTCTTATCAAGGTACTAGAGGTATTGATAAAAGAGCAGAAGCTGCAGGCTATGGTGATAGTTTTAGTAAGCCAGAAACTCAATGCAAGTGTCAAGCATGTATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAGTGTTGACATGAAGAACAAGTTATACTCAAAGAGATCACTGCAGACAAAACAAGGTGATGCAGGAGGAGTTTTGGAATATATGGAGAAGAAAGCATCAGAAGATGTAAGTTTTTCTATTCTATTCAAGTTGACGAGGATGATTTAA
More
|
|||||||
| Protein seq | MTSIMLMLVKKVSTLEEAAIDHVGNTKIIKNKTFCCSYQGTRGIDKRAEAAGYGDSFSKPETQCKCQACMKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTSVDMKNKLYSKRSLQTKQGDAGGVLEYMEKKASEDVSFSILFKLTRMI |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g14880 | LOC_Os08g14880.4 | Chr08 | 8966297 | 8969978 | + | MSU_osa1r7 | ||
| CDS seq | ATGACTTCTATAATGCTTATGCTGGTGAAAAAGGTTTCAACATTAGAAGAAGCAGCTATCGATCATGTGGGAAATACCAAAATTATTAAAAACAAGACATTTTGTTGTTCTTATCAAGGTACTAGAGGTATTGATAAAAGAGCAGAAGCTGCAGGCTATGGTGATAGTTTTAGTAAGCCAGAAACTCAATGCAAGTGTCAAGCATGTATGAAGATAAGTCTCATAGATGGATTATATTCTGTCTACCACTTTGTGCCTGAACATAGTCATAATCTTGCAACAAAAAGCCAGGCTCATCAGTTAAGATCACAAAGGAAGATAAATGAAGCTCAGGTTGCAAGTGTTGAAGTCGCAAAATCTGTAGGCATTTCTACTAAAGAAGCCATTGATTTGATGGCAAAACAAGCATGTGGATTTGAGAATCTCGGCTTTACTAGTGTTGACATGAAGAACAAGTTATACTCAAAGAGATCACTGCAGACAAAACAAGGTGATGCAGGAGGAGTTTTGGAATATATGGAGAAGAAAGCATCAGAAGATGGAAGAAGCAAAAACAATTTTGACAAATGA
More
|
|||||||
| Protein seq | MTSIMLMLVKKVSTLEEAAIDHVGNTKIIKNKTFCCSYQGTRGIDKRAEAAGYGDSFSKPETQCKCQACMKISLIDGLYSVYHFVPEHSHNLATKSQAHQLRSQRKINEAQVASVEVAKSVGISTKEAIDLMAKQACGFENLGFTSVDMKNKLYSKRSLQTKQGDAGGVLEYMEKKASEDGRSKNNFDK |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.660289 | 0.342443 | 0.404957 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39790 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008490 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008560 | RBH | 0.981104 | 14.019254 | 12.747552 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008460 | RBH | 20.099354 | 76.088638 | 61.335793 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008470 | RBH | 0.476898 | 0.0 | 0.183978 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0135600 | RBH | 7.3345165 | 82.9036405 | 46.684578 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008210 | RBH | 0.0 | 5.754357 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008200 | RBH | 0.185315 | 2.133114 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008450 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008260 | RBH | 0.0 | 0.0 | 0.0 |
