Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0036600 | OGI:08006390 | 7/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:2436233-2438303 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCAAACAACAGCATGATTCCTCCATCAGAGGCATCACAACTGCATGATGCAGGAGCAAGTCCCATGTTCTTGGACAATACATCTGCTACAACGACGTCATTCACAAATCTTGTTGAGCCTGATGATTCATCCGCTGGCCTGGGAATGAAGCAAATAGAAACGGTAAGATCAATATGTTCTGCTCTACATTTTGTTAAATTAGTTGAATCTGAGTTGAATTTTCTCATAAACCAATTTGATGTGAAATATTATAATAAATAAAATCAGGATCAGGGAGCAAATGAAGATTCTCAAACCAGAAAAGCTTCAGAAAAAATGACGCCAAAGGTCGGAATGAAATTTAACTCTGAACAAGAAGCTTATGACTTTTACAATGCATATGCTTCTGAGATTGGTTTCAGCATTAGAAGAAGCAGCTACCATTATATGGGAAATACAAAAATTATAAAGAATAGGACATTCTGTTGTTCTCGTGAAGGTATTTTCTTCATGTCATTTTACTGTGACATTAAATTTTTATAGTATATTAGATTTTAAATAAGTTCATTGTATAACAGGAACTAGAGGCGTTGATAAAAGAACAGAAGCTTTAGGCTATGGTAATAGTTTTAACAGACCAGAAACTCGGTGCAAGTGTCAAGCATGTATGAAGATAAGTCTTATAGATGGATTCTATCAGGTCTACCACTTTGTGCCTGAACATAGCCATATTCTTGCCACTAAAAGTCAAGCTCACCAGTTAAGATCACAAAGGAAGGTAAATGAAGCTCAGGTTGCAAGTGTTGAAGTTGCAAAATCTGTAGGCATTTCAACTAAAGCGGTTGTTGACTTGTTGGCAAAACAATCATGTGGATATGAGAATCTTGGCTTCACTCGTGTTGACATGAAGAATAAGTTATACTCAAAAAGGTCGCTGCAGACAAAACAAGGTGACACCGGAGGAGTGTTAGAATATATGGAGAAGAAATCATCAGAATATATCAAGTTTTTCTATTCTATTCAGGTCGATGAGGATGATTTAATAACAAATATTTTTTGGGCTGACTCTAAAATGATTGCTGATTATGAAGACTTTGGGGATGTTGTTTGCTTTGACACAACATACAGGAAATTGAATGATGGACGCCCTTTTGGTTTGCTTGTAGGAGTGAATAATCATAAGAAGACTACAGTTTTTGGTGCTGCACTTTTATATGATGAGAGTGCTGATAGTTTTGTTTGGTTATTTAATACTTTTCTAAATGTTATGTCAGGAAAGAAGCCAAAAACAATTTTGACAGATGAAGACGCAGCCATGGCTAAAGCAATCAAATTAGTTTTTAAAGGAACTCATCATCAGATATGTGTATGGTAGATGAATCAAAATGCCTGCAAGCACCTTGCTGGGTGTGTTAAGGATTATAAGAAATTTAATAGTGACTTTCAGAATTGCATATATGATCAAGAGGAGGAGGAAGAATTTATAAAAGCATGGCATCAATTGCTTGACAAATATGAGCTACAACAGAATAAATGGTTGCAGCGGATTTTTGACAAACGACATCAATGGGCACTAGTATATGACCGAAACACATTCTCTGCTGATATGAGTACCACCCAAAGAAATGAAAGTTTTAACAATGAATTAAAGGGTTATATTAGTGTGAAATATGATATGCTTACTTTTTTTGAGCACTTCGACAGGTTGTTGGGAGATAAAAGATATGAAGAGGTAAAGTGTGATTTTAGAGCAACACAAAGTACACCAAGGCCAAAAGCAGAGTTGAGAATATTACGAGATGTAGTAGAGGTTTATACTCCAGCAGTATATAAGATTTTTGAGGAAGAAGTAATGCAGACTTTAAATTGTGATATATTCTACTGTGGTGATGTTGATGAACAAAAGGTGTATAAAATAAAGTCTCATGGTAAGCATCATGAACATGTTGTTAAATTCTCACCATTGGAATCTAGTGTCAAATGCAGCTGCAAGAAGTTTGAATTTGCTGGTATCCTGTGCTCTCATGCCCTGAAAGTACTTGACATCAATAACATCAAATCAGTTCCTCAAATGTATATACTAAAATGA
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| CDS seq | ATGCCAAACAACAGCATGATTCCTCCATCAGAGGCATCACAACTGCATGATGCAGGAGCAAGTCCCATGTTCTTGGACAATACATCTGCTACAACGACGTCATTCACAAATCTTGTTGAGCCTGATGATTCATCCGCTGGCCTGGGAATGAAGCAAATAGAAACGGATCAGGGAGCAAATGAAGATTCTCAAACCAGAAAAGCTTCAGAAAAAATGACGCCAAAGGTCGGAATGAAATTTAACTCTGAACAAGAAGCTTATGACTTTTACAATGCATATGCTTCTGAGATTGGTTTCAGCATTAGAAGAAGCAGCTACCATTATATGGGAAATACAAAAATTATAAAGAATAGGACATTCTGTTGTTCTCGTGAAGGAACTAGAGGCGTTGATAAAAGAACAGAAGCTTTAGGCTATGGTAATAGTTTTAACAGACCAGAAACTCGGTGCAAGTGTCAAGCATGTATGAAGATAAGTCTTATAGATGGATTCTATCAGGTCTACCACTTTGTGCCTGAACATAGCCATATTCTTGCCACTAAAAGTCAAGCTCACCAGTTAAGATCACAAAGGAAGGTAAATGAAGCTCAGGTTGCAAGTGTTGAAGTTGCAAAATCTGTAGGCATTTCAACTAAAGCGGTTGTTGACTTGTTGGCAAAACAATCATGTGGATATGAGAATCTTGGCTTCACTCGTGTTGACATGAAGAATAAGTTATACTCAAAAAGGTCGCTGCAGACAAAACAAGGTGACACCGGAGGAGTGTTAGAATATATGGAGAAGAAATCATCAGAATATATCAAGTTTTTCTATTCTATTCAGGTCGATGAGGATGATTTAATAACAAATATTTTTTGGGCTGACTCTAAAATGATTGCTGATTATGAAGACTTTGGGGATGTTGTTTGCTTTGACACAACATACAGGAAATTGAATGATGGACGCCCTTTTGGTTTGCTTGTAGGAGTGAATAATCATAAGAAGACTACAGTTTTTGGTGCTGCACTTTTATATGATGAGAGTGCTGATAGTTTTGTTTGGTTATTTAATACTTTTCTAAATGTTATGTCAGGAAAGAAGCCAAAAACAATTTTGACAGATGAAGACGCAGCCATGGCTAAAGCAATCAAATTAGTTTTTAAAGGAACTCATCATCAGATATGTGTATGGTTGTTGGGAGATAAAAGATATGAAGAGGTAAAGTGTGATTTTAGAGCAACACAAAGTACACCAAGGCCAAAAGCAGAGTTGAGAATATTACGAGATGTAGTAGAGGTTTATACTCCAGCAGTATATAAGATTTTTGAGGAAGAAGTAATGCAGACTTTAAATTGTGATATATTCTACTGTGGTGATGTTGATGAACAAAAGGTGTATAAAATAAAGTCTCATGGTAAGCATCATGAACATGTTGTTAAATTCTCACCATTGGAATCTAGTGTCAAATGCAGCTGCAAGAAGTTTGAATTTGCTGGTATCCTGTGCTCTCATGCCCTGAAAGTACTTGACATCAATAACATCAAATCAGTTCCTCAAATGTATATACTAAAATGA
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| Protein seq | MPNNSMIPPSEASQLHDAGASPMFLDNTSATTTSFTNLVEPDDSSAGLGMKQIETDQGANEDSQTRKASEKMTPKVGMKFNSEQEAYDFYNAYASEIGFSIRRSSYHYMGNTKIIKNRTFCCSREGTRGVDKRTEALGYGNSFNRPETRCKCQACMKISLIDGFYQVYHFVPEHSHILATKSQAHQLRSQRKVNEAQVASVEVAKSVGISTKAVVDLLAKQSCGYENLGFTRVDMKNKLYSKRSLQTKQGDTGGVLEYMEKKSSEYIKFFYSIQVDEDDLITNIFWADSKMIADYEDFGDVVCFDTTYRKLNDGRPFGLLVGVNNHKKTTVFGAALLYDESADSFVWLFNTFLNVMSGKKPKTILTDEDAAMAKAIKLVFKGTHHQICVWLLGDKRYEEVKCDFRATQSTPRPKAELRILRDVVEVYTPAVYKIFEEEVMQTLNCDIFYCGDVDEQKVYKIKSHGKHHEHVVKFSPLESSVKCSCKKFEFAGILCSHALKVLDINNIKSVPQMYILK |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0036600 | OsMH63_08T0036600.1 | Chr08 | 2436233 | 2438303 | + | maker | ||
| CDS seq | ATGCCAAACAACAGCATGATTCCTCCATCAGAGGCATCACAACTGCATGATGCAGGAGCAAGTCCCATGTTCTTGGACAATACATCTGCTACAACGACGTCATTCACAAATCTTGTTGAGCCTGATGATTCATCCGCTGGCCTGGGAATGAAGCAAATAGAAACGGATCAGGGAGCAAATGAAGATTCTCAAACCAGAAAAGCTTCAGAAAAAATGACGCCAAAGGTCGGAATGAAATTTAACTCTGAACAAGAAGCTTATGACTTTTACAATGCATATGCTTCTGAGATTGGTTTCAGCATTAGAAGAAGCAGCTACCATTATATGGGAAATACAAAAATTATAAAGAATAGGACATTCTGTTGTTCTCGTGAAGGAACTAGAGGCGTTGATAAAAGAACAGAAGCTTTAGGCTATGGTAATAGTTTTAACAGACCAGAAACTCGGTGCAAGTGTCAAGCATGTATGAAGATAAGTCTTATAGATGGATTCTATCAGGTCTACCACTTTGTGCCTGAACATAGCCATATTCTTGCCACTAAAAGTCAAGCTCACCAGTTAAGATCACAAAGGAAGGTAAATGAAGCTCAGGTTGCAAGTGTTGAAGTTGCAAAATCTGTAGGCATTTCAACTAAAGCGGTTGTTGACTTGTTGGCAAAACAATCATGTGGATATGAGAATCTTGGCTTCACTCGTGTTGACATGAAGAATAAGTTATACTCAAAAAGGTCGCTGCAGACAAAACAAGGTGACACCGGAGGAGTGTTAGAATATATGGAGAAGAAATCATCAGAATATATCAAGTTTTTCTATTCTATTCAGGTCGATGAGGATGATTTAATAACAAATATTTTTTGGGCTGACTCTAAAATGATTGCTGATTATGAAGACTTTGGGGATGTTGTTTGCTTTGACACAACATACAGGAAATTGAATGATGGACGCCCTTTTGGTTTGCTTGTAGGAGTGAATAATCATAAGAAGACTACAGTTTTTGGTGCTGCACTTTTATATGATGAGAGTGCTGATAGTTTTGTTTGGTTATTTAATACTTTTCTAAATGTTATGTCAGGAAAGAAGCCAAAAACAATTTTGACAGATGAAGACGCAGCCATGGCTAAAGCAATCAAATTAGTTTTTAAAGGAACTCATCATCAGATATGTGTATGGTTGTTGGGAGATAAAAGATATGAAGAGGTAAAGTGTGATTTTAGAGCAACACAAAGTACACCAAGGCCAAAAGCAGAGTTGAGAATATTACGAGATGTAGTAGAGGTTTATACTCCAGCAGTATATAAGATTTTTGAGGAAGAAGTAATGCAGACTTTAAATTGTGATATATTCTACTGTGGTGATGTTGATGAACAAAAGGTGTATAAAATAAAGTCTCATGGTAAGCATCATGAACATGTTGTTAAATTCTCACCATTGGAATCTAGTGTCAAATGCAGCTGCAAGAAGTTTGAATTTGCTGGTATCCTGTGCTCTCATGCCCTGAAAGTACTTGACATCAATAACATCAAATCAGTTCCTCAAATGTATATACTAAAATGA
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| Protein seq | MPNNSMIPPSEASQLHDAGASPMFLDNTSATTTSFTNLVEPDDSSAGLGMKQIETDQGANEDSQTRKASEKMTPKVGMKFNSEQEAYDFYNAYASEIGFSIRRSSYHYMGNTKIIKNRTFCCSREGTRGVDKRTEALGYGNSFNRPETRCKCQACMKISLIDGFYQVYHFVPEHSHILATKSQAHQLRSQRKVNEAQVASVEVAKSVGISTKAVVDLLAKQSCGYENLGFTRVDMKNKLYSKRSLQTKQGDTGGVLEYMEKKSSEYIKFFYSIQVDEDDLITNIFWADSKMIADYEDFGDVVCFDTTYRKLNDGRPFGLLVGVNNHKKTTVFGAALLYDESADSFVWLFNTFLNVMSGKKPKTILTDEDAAMAKAIKLVFKGTHHQICVWLLGDKRYEEVKCDFRATQSTPRPKAELRILRDVVEVYTPAVYKIFEEEVMQTLNCDIFYCGDVDEQKVYKIKSHGKHHEHVVKFSPLESSVKCSCKKFEFAGILCSHALKVLDINNIKSVPQMYILK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.171915 | 0.6512375 | 2.43819 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g06930 | SBH | 0.389008 | 0.497235 | 0.572660 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003060 | RBH | 0.000000 | 0.000000 | 0.237103 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003020 | RBH | 0.0 | 0.150371 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002690 | RBH | 0.0 | 0.000000 | 0.105616 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0041100 | RBH | 1.2027945 | 1.129889 | 2.0226175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002840 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002680 | RBH | 0.000000 | 5.021750 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002780 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002810 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004150 | SBH | 0.183620 | 8.171165 | 2.808344 |
