Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_08g0004150 OGI:08012110 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr08:3512232-3518745
Gene Symbol -
DNA seq

ccttctctgccgctgcctccgccgcctcgccacgcggcggccggcgagcagggccccgcagccacggcgtgggcggactcctctcctttccccccgaccacctccgccctcgccttctcaggcctcctcgcgcgcccggccggcgacggcgagcatctcggctcgaatcgaactgaaggtatccgttcttctcgtctccctccctcctctgcgcgccacttcgtgtgctggattgggtagattgggactcatttgaaatcgaatcgatccatttcgctccaattagacctcccagttcatccccatttgcttcgtttgttgcgtgctttggtgaagcacttactaatggcatttttttttttggaaaaaaattgggggttaagttgaatctgcatgctccaggatggagatcgacgggcaggaggcagggcacgagcacgacgggatgatggagccgcaggtggtggacctcgaggaggaggaggaggacgacagcatcaacttctgggcctcgctgggcgtccatgccgtcgaccagatgccgctgcacggcggcgtccagatcgtcgaccagccgtcgccgccgccgcaggagcaggcgcaatcgcagtcgcagtcggtccgcaaggacctgttcccggtcgactccgacccctgccttgagccccgggttgggatggagttcgagtccggcgaggccgccaagaccttctacattgcctacgcggggcgcgtggggttctccgtccgcattgctcggtcgcggcggtccaagtgtaacgagtccatcatcatgctgaggtttgtctgctccaaggaagggttcagcaaggagaagcatgtcgtcgcggggaagaagacgaggaagcggcctgcttccatccgggagggatgcaacgccatgctcgaggtgctacgcagaggcgatagcaagtggattgtcaccaagcttgtcaaggagcataaccatgaggttgggatgcccagcagagtgcactacattgccatggagggtgatacggtggtcgacccttacattggtatggagtttgaatcacttgaggccgccaagacattctactactcatacgcgacccgtgtcgggtttgaagctcgtgtgcgtcagtcccgcaagtcgcaagatgagtcactcaagatgctgaagcttgtgtgctcaaggcaccgataccattcaggaagagagaccaatggaggggatcccaagagagtgcaggccttggatccctccagggatggctgtgatgcattatttgagataattcggaaagacagagatgcctggacggtctctaaactcatcttagagcatactcatgagctgaacccggcaccaacaagtagagttcgctgtattcgctcacagggtgaggtacttgttattgcaaagaacttctctgacacacgcaatctcctattgaacggtctagatttccagcatcctagagagttccagtataatgatttagggccagaggatgctcaaagcttactcagatatctcaagaacacacaaagcgaggatcctgcttttttctatgctgtgcagcttaacagtaatggacacacagccaatattttctgggctgatgctaaagctaggatggcttactaccattttggtgatgttgttaggcttggtacactgtgcagaaacagcaaagagtatatacctattgccatattttcaggcatcaatcatcatttgcagcctgttgtctttggctgtgcactaattgttgatgattctgaagcatcgtttgcatggttatttgaaaaatggcttgaagcaatgcctgtgggccctcctgtctcgttggtattagagtttaaacaagaaatggctgccgcagctaccaaaatactacctgatactcattgtacgttctgtgagaagcatattttgggcactgtcagggaagagctaggaagtttgtatccagaaccagaactagaccatttcattactgatctgagaaagtgcattgactgctgcagattagaagaatcatttgaatcatgttgggattctgtcatcagaaaatatggcttcagaaataatgaactattacagtctctatatgaaattcgcagacaatgggcccctgcatacacaaggaaggtattctgtgccagaaatctactgccacaaagctgtcagaatcttgaaaatgttatcgagaagcacttctcatccaagacccagttatgggtggccgttcagcaacttggacaagctgtttgtaatttttatgaaaaggaaactcaggcagattatctgacaacatttcaaatggcaacagttaggactgcatcacctcttgaaaagcaagcaagttcaatattcaccaggtcaatatttgaaaaatttcaggatcagtttgccgagtcctttgggtaccatgcagatagacttgaggatgacatgctacacaagtatcgtgtcacagtaagtgaaggggatgaggaggcacatactgtttctttcaatccagaaaaaaagacagtgggttgtagttgctgcctgtttgagagctgcggcatcttgtgtcggcatgctcttcgtgttttcattattgaaggtgtgcgtgctctgccaaaggcttatatcttgaaacgctggacaaagcatgcaaaaagtattgccactgtagatgattacattgatctaagaggatgtcgtgacgatccttcaaccacaatgtacaatgatctccattgtgacgcaatcaaatgtgcaaaagAgggttcggcatcctctgagctctatagtgttgctaaagaggcattgcacaaagctcttgatgaggtcgtgactttaaggaaaatcagagaccagcaaaatctacaaagctgtaaaaggccgatcaagaagtctgctaagggaaaagattcagatcattctactatcataagctcaacaaggtcagcatccaaaaattctctcttggagattgatgatattacatgaccatatatcatgagtaataaggaaataatgcaaTtttacctgttctgacttgtacaatagtagctcattcgatctcataattaccacttaaattgtagctcattcgatctgataactaccacttagattgtagctgattttagttgtttctattttctgcttgtagtgcatatatgactgtaaggggtctagtgaacccttgaggcaccaatattagaaaaaggttgtggattttttttataactttactgtaaaatggagctcttttttgtatatgagattagtaatttctctacactattacatgattactagacaatttacctcgtgtgctagttgtggttcaactccattttacttgAaaacactattctaactatcagctgtgaatttttctacggtaaagtggagctCccttctgtagttatgattctgcacaccattataatggagattttctgtcgttccatggaagtatgcacttgtagcttacctcagcagcatgaacatggagtgtgctacagatgtacgccatcaatctatgagagttcctggtcggactttctttcccgggttttttcttgtgttaaccaaactccacagccaccgacgcgcaacggtcaaaagatattggctgcatgttcactaggaattccttgaagtatttattggtgccaagcaaaattgtggtatatatgaatttttctcaactgtaccttgattgtttcgatgggcaataattttgaggccaacttcctaagataagggacaaacattgtaaaaccaagaaaatactgttgttaattattacctccgtcccaaaatataacgacttttagcgatgggcagattcatagctaaaacttgttatattcttgagaggagattgtagtttgcaactatgggttttcatatgtttgaacgatggttctaaatatggatactagtctttgtttaaacagtagcagcattatttttaaaattacgcaaggtcagtagttcccattaccgtggtgtcttgtcctttcatcacttacgtttgctgtgccttttgaatcaacgaaactacattttttttatagcatgtatagtacttgttatccctaaaattcatgcactgaccttgatcagacttcagactttggaaaaattctatcgggagtttcagtctcatgtcttattgtgtcttccagtgttgttactaaaaaaaaacacgaatattagggaaggacctaatatcAAATaaatagaaaGGGtgaggctttgaagccaggccggctagcccaccaacttgtggagctagccggaagaccgctgggcatttctccagtgttgttactccttggagctgtcactctttctcaatggatgctacaatatttatggcctatagcatgaagctttgggacatttgtaaccccactatctttctttttctacctgaccataccactgcctaaTtgggttccttcatcatatggtgttttgtttagttcatgtcaattccgattagctttcagtgactaattctgcatttctttaccagtatcttgtaacctcatcaatgtggtcattttttctcttctgttgatgttctttgcatcatatgttaaactcattaagctgcatattgatgttccggccatttgttcaagtccctagtattaccatttcattcctttcagctagtcagtttgtactgcaaacaggcaaatagtctggTgtttgaacatttctttatgttttccttGtttggtactttcatttacttgaccctaggcatttcataattcctttctaatatggtttcattcctggcgagttccataaacagttacgtttcctctcttttgatttgatgtccctctctagtctctaTtttttgaggtcatcttttttacatgttgtaggaatgcgctgggcagtgggaactgaatcaagtagcttatcttgccatgtcagatgagcttatcttcacatacggAatgtctggtgcagtgcacataaaatccgtactgctgaaggctggaaaggagcatgtaagtattgtgttcattccaaatcacatttgttcaactgctgttgtttacacagtttagcagtttacctgattgcaatgttttattacatgtggataggtagaattgaacacattgtgataacattttttttgtaccaattttgctgataggttaacatctaaatgaagaaaggagtgcaataccagctgtatacatcaatcatgctgtatcaagggagacaacctttggatacagctattcagcaagctgatagaacagtaagttttcttttgcgctttgatacgctttcagaagaatctttcacattctgttgactgttttattatcaaTCtcttgcagtacctggcagaatgaatcaaggtggggagttgaagggaagctctgttttccccattacggaggcaagcgtgaagaaaaaggtgCcactttcaGgcatatccacagtccatagcaactctgattccagttgcaagttgtaTgttgctgttcgatcagttgaattttgctcgaacAgcatgccgcgtgcacataacgccacaaccatgtgcaggtaatgacAaaaccacagagaggagggtcagcgtgccaagataggtcatgattgaaagcaacgtatgcatacagacacactacaaaatctagcctgaagctggatgcttcaacaatcaaaGggttggcaaactgaCcactgctgcatcttacctgggaacagaaatgagaggaactccttttcttgttactTAaaagaaaagaaatgcgcccacctgccatgtgcatcGggctcccaCtcgaagatcatcacctcgcgagtggacaaggagaagatgtatgctctgatagtggtttctcagttataaattgcacagtttggtggtacttgtgaggttgcagctgtcaggatcagaatGggggagcattgcaaagcgtctccctgagCctgagctttcagcccctGgtggttccaggcccaggcagacgtgtcccaacagttggttcttcttccTtgtacatgtctccatcggcttgctcaaccccaccaaatctgccgcgctggcccacggtctccttggctgagatagagattgcaagcgtgctgtgtgttgtgtgttgtcgctggcatggagcttgtggccgaacggatagaccactatgttggcctgtcattggtcacccaagggcaaggggcagcatgccttctgcctttaccaactctcaggTtccctgctctctctctctctgctttgctttgctgaGttcatatgcacaatgcaatcatgcatatactcccaattaaacagtaatgctaatgcaatgtcaaaCctttcttttcatcatccaattaattatgaattatctttgcactgtttgtttatttgtagctagatgctgcatcccctttcTttgggcagactcaatgtggaccagttggtttcttctccttttcttaTttataacagaagtgaaccacttcattttaaGtcca

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CDS seq

atggagatcgacgggcaggaggcagggcacgagcacgacgggatgatggagccgcaggtggtggacctcgaggaggaggaggaggacgacagcatcaacttctgggcctcgctgggcgtccatgccgtcgaccagatgccgctgcacggcggcgtccagatcgtcgaccagccgtcgccgccgccgcaggagcaggcgcaatcgcagtcgcagtcggtccgcaaggacctgttcccggtcgactccgacccctgccttgagccccgggttgggatggagttcgagtccggcgaggccgccaagaccttctacattgcctacgcggggcgcgtggggttctccgtccgcattgctcggtcgcggcggtccaagtgtaacgagtccatcatcatgctgaggtttgtctgctccaaggaagggttcagcaaggagaagcatgtcgtcgcggggaagaagacgaggaagcggcctgcttccatccgggagggatgcaacgccatgctcgaggtgctacgcagaggcgatagcaagtggattgtcaccaagcttgtcaaggagcataaccatgaggttgggatgcccagcagagtgcactacattgccatggagggtgatacggtggtcgacccttacattggtatggagtttgaatcacttgaggccgccaagacattctactactcatacgcgacccgtgtcgggtttgaagctcgtgtgcgtcagtcccgcaagtcgcaagatgagtcactcaagatgctgaagcttgtgtgctcaaggcaccgataccattcaggaagagagaccaatggaggggatcccaagagagtgcaggccttggatccctccagggatggctgtgatgcattatttgagataattcggaaagacagagatgcctggacggtctctaaactcatcttagagcatactcatgagctgaacccggcaccaacaagtagagttcgctgtattcgctcacagggtgagcatattttgggcactgtcagggaagagctaggaagtttgtatccagaaccagaactagaccatttcattactgatctgagaaagtgcattgactgctgcagattagaagaatcatttgaatcatgttgggattctgtcatcagaaaatatggcttcagaaataatgaactattacagtctctatatgaaattcgcagacaatgggcccctgcatacacaaggaaggtattctgtgccagaaatctactgccacaaagctgtcagaatcttgaaaatgttatcgagaagcacttctcatccaagacccagttatgggtggccgttcagcaacttggacaagctgtttgtaatttttatgaaaaggaaactcaggcagattatctgacaacatttcaaatggcaacagttaggactgcatcacctcttgaaaagcaagcaagttcaatattcaccaggtcaatatttgaaaaatttcaggatcagtttgccgagtcctttgggtaccatgcagatagacttgaggatgacatgctacacaagtatcgtgtcacagtaagtgaaggggatgaggaggcacatactgtttctttcaatccagaaaaaaagacagtgggttgtagttgctgcctgtttgagagctgcggcatcttgtgtcggcatgctcttcgtgttttcattattgaaggtgtgcgtgctctgccaaaggcttatatcttgaaacgctggacaaagcatgcaaaaagtattgccactgtagatgattacattgatctaagaggatgtcgtgacgatccttcaaccacaatgtacaatgatctccattgtgacgcaatcaaatgtgcaaaagAgggttcggcatcctctgagctctatagtgttgctaaagaggcattgcacaaagctcttgatgaggtcgtgactttaaggaaaatcagagaccagcaaaatctacaaagctgtaaaaggccgatcaagaagtctgctaagggaaaagattcagatcattctactatcataagctcaacaaggaatgcgctgggcagtgggaactga

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Protein seq

MEIDGQEAGHEHDGMMEPQVVDLEEEEEDDSINFWASLGVHAVDQMPLHGGVQIVDQPSPPPQEQAQSQSQSVRKDLFPVDSDPCLEPRVGMEFESGEAAKTFYIAYAGRVGFSVRIARSRRSKCNESIIMLRFVCSKEGFSKEKHVVAGKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHEVGMPSRVHYIAMEGDTVVDPYIGMEFESLEAAKTFYYSYATRVGFEARVRQSRKSQDESLKMLKLVCSRHRYHSGRETNGGDPKRVQALDPSRDGCDALFEIIRKDRDAWTVSKLILEHTHELNPAPTSRVRCIRSQGEHILGTVREELGSLYPEPELDHFITDLRKCIDCCRLEESFESCWDSVIRKYGFRNNELLQSLYEIRRQWAPAYTRKVFCARNLLPQSCQNLENVIEKHFSSKTQLWVAVQQLGQAVCNFYEKETQADYLTTFQMATVRTASPLEKQASSIFTRSIFEKFQDQFAESFGYHADRLEDDMLHKYRVTVSEGDEEAHTVSFNPEKKTVGCSCCLFESCGILCRHALRVFIIEGVRALPKAYILKRWTKHAKSIATVDDYIDLRGCRDDPSTTMYNDLHCDAIKCAKEGSASSELYSVAKEALHKALDEVVTLRKIRDQQNLQSCKRPIKKSAKGKDSDHSTIISSTRNALGSGN

Function Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_08g0004150 OsNaBo_08g0004150.01 Chr08 3512232 3517834 + NAM
CDS seq

atggagatcgacgggcaggaggcagggcacgagcacgacgggatgatggagccgcaggtggtggacctcgaggaggaggaggaggacgacagcatcaacttctgggcctcgctgggcgtccatgccgtcgaccagatgccgctgcacggcggcgtccagatcgtcgaccagccgtcgccgccgccgcaggagcaggcgcaatcgcagtcgcagtcggtccgcaaggacctgttcccggtcgactccgacccctgccttgagccccgggttgggatggagttcgagtccggcgaggccgccaagaccttctacattgcctacgcggggcgcgtggggttctccgtccgcattgctcggtcgcggcggtccaagtgtaacgagtccatcatcatgctgaggtttgtctgctccaaggaagggttcagcaaggagaagcatgtcgtcgcggggaagaagacgaggaagcggcctgcttccatccgggagggatgcaacgccatgctcgaggtgctacgcagaggcgatagcaagtggattgtcaccaagcttgtcaaggagcataaccatgaggttgggatgcccagcagagtgcactacattgccatggagggtgatacggtggtcgacccttacattggtatggagtttgaatcacttgaggccgccaagacattctactactcatacgcgacccgtgtcgggtttgaagctcgtgtgcgtcagtcccgcaagtcgcaagatgagtcactcaagatgctgaagcttgtgtgctcaaggcaccgataccattcaggaagagagaccaatggaggggatcccaagagagtgcaggccttggatccctccagggatggctgtgatgcattatttgagataattcggaaagacagagatgcctggacggtctctaaactcatcttagagcatactcatgagctgaacccggcaccaacaagtagagttcgctgtattcgctcacagggtgagcatattttgggcactgtcagggaagagctaggaagtttgtatccagaaccagaactagaccatttcattactgatctgagaaagtgcattgactgctgcagattagaagaatcatttgaatcatgttgggattctgtcatcagaaaatatggcttcagaaataatgaactattacagtctctatatgaaattcgcagacaatgggcccctgcatacacaaggaaggtattctgtgccagaaatctactgccacaaagctgtcagaatcttgaaaatgttatcgagaagcacttctcatccaagacccagttatgggtggccgttcagcaacttggacaagctgtttgtaatttttatgaaaaggaaactcaggcagattatctgacaacatttcaaatggcaacagttaggactgcatcacctcttgaaaagcaagcaagttcaatattcaccaggtcaatatttgaaaaatttcaggatcagtttgccgagtcctttgggtaccatgcagatagacttgaggatgacatgctacacaagtatcgtgtcacagtaagtgaaggggatgaggaggcacatactgtttctttcaatccagaaaaaaagacagtgggttgtagttgctgcctgtttgagagctgcggcatcttgtgtcggcatgctcttcgtgttttcattattgaaggtgtgcgtgctctgccaaaggcttatatcttgaaacgctggacaaagcatgcaaaaagtattgccactgtagatgattacattgatctaagaggatgtcgtgacgatccttcaaccacaatgtacaatgatctccattgtgacgcaatcaaatgtgcaaaagAgggttcggcatcctctgagctctatagtgttgctaaagaggcattgcacaaagctcttgatgaggtcgtgactttaaggaaaatcagagaccagcaaaatctacaaagctgtaaaaggccgatcaagaagtctgctaagggaaaagattcagatcattctactatcataagctcaacaaggaatgcgctgggcagtgggaactga

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Protein seq

MEIDGQEAGHEHDGMMEPQVVDLEEEEEDDSINFWASLGVHAVDQMPLHGGVQIVDQPSPPPQEQAQSQSQSVRKDLFPVDSDPCLEPRVGMEFESGEAAKTFYIAYAGRVGFSVRIARSRRSKCNESIIMLRFVCSKEGFSKEKHVVAGKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHEVGMPSRVHYIAMEGDTVVDPYIGMEFESLEAAKTFYYSYATRVGFEARVRQSRKSQDESLKMLKLVCSRHRYHSGRETNGGDPKRVQALDPSRDGCDALFEIIRKDRDAWTVSKLILEHTHELNPAPTSRVRCIRSQGEHILGTVREELGSLYPEPELDHFITDLRKCIDCCRLEESFESCWDSVIRKYGFRNNELLQSLYEIRRQWAPAYTRKVFCARNLLPQSCQNLENVIEKHFSSKTQLWVAVQQLGQAVCNFYEKETQADYLTTFQMATVRTASPLEKQASSIFTRSIFEKFQDQFAESFGYHADRLEDDMLHKYRVTVSEGDEEAHTVSFNPEKKTVGCSCCLFESCGILCRHALRVFIIEGVRALPKAYILKRWTKHAKSIATVDDYIDLRGCRDDPSTTMYNDLHCDAIKCAKEGSASSELYSVAKEALHKALDEVVTLRKIRDQQNLQSCKRPIKKSAKGKDSDHSTIISSTRNALGSGN

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_08g0004150 OsNaBo_08g0004150.02 Chr08 3515117 3518745 + NAM
CDS seq

atgtcagatgagcttatcttcacatacggAatgtctggtgcagtgcacataaaatccgtactgctgaaggctggaaaggagcatggagacaacctttggatacagctattcagcaagctgatagaacatacctggcagaatgaatcaaggtggggagttgaagggaagctctgttttccccattacggaggcaagcgtgaagaaaaagaaaagaaatgcgcccacctgccatgtgcatcGggctcccaCtcgaagatcatcacctcgcgagtggacaaggagaagatgtatgctctgatagtgctgtcaggatcagaatGggggagcattgcaaagcgtctccctgagCctgagctttcagcccctGgtggttccaggcccaggcagacgtgtcccaacagttggttcttcttccTtgtacatgtctccatcggcttgctcaaccccaccaaatctgccgcgctggcccacggtctccttggctga

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Protein seq

MSDELIFTYGMSGAVHIKSVLLKAGKEHGDNLWIQLFSKLIEHTWQNESRWGVEGKLCFPHYGGKREEKEKKCAHLPCASGSHSKIITSRVDKEKMYALIVLSGSEWGSIAKRLPEPELSAPGGSRPRQTCPNSWFFFLVHVSIGLLNPTKSAALAHGLLG

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr08 3517259 3517476 + OsNaBo_08g0004150.01 OsNaBo_08g0004150.02,OsNaBo_08g0004150.01 All

Expression

Leaf Root Panicle
FPKM 0.183620 8.171165 2.808344

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0166400 RBH 0.575565 0.658086 1.650285
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g06930 RBH 0.389008 0.497235 0.572660
Nipponbare | IRGSP 1.0 | RAP-db Os08g0166400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0004530 RBH 0.551223 1.371988 4.205722
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0004600 RBH 0.000000 0.000000 1.587875
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0004550 RBH 0.663637 1.091617 2.922784
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0004550 RBH 0.143599 0.110092 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0004340 RBH 4.221185 9.636608 7.688003
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0071200 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0004170 RBH 0.166915 0.349517 0.387331
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0063300 RBH 3.596159 11.602201 12.54617
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0004240 RBH 0.054276 0.414238 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0004250 RBH 0.210823 24.411478 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0004120 RBH 1.679464 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0004390 RBH 0.692635 0.766462 0.499212
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0004280 RBH 0.213676 3.056194 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G004210 RBH 0.111948 2.067501 1.261862
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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