Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0004390 | OGI:08012110 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:3944906-3947766 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagatcgacgggcaggaggcagggcacgagcacgacgggatgatggagccgcaggtggtggacctcgaggaggaggaggaggacgacagcatcaacttctgggcctcgctgggcgtccatgccgtcgaccagatgccgctgcacggcggcgtccagatcgtcgaccagccgtcgccgccgccgcaggagcaggcgcaatcgcagtcgcagtcggtccgcaaggacctgttcccggtcgactccgacccctgccttgagccccgggttgggatggagttcgagtccggcgaggccgccaagaccttctacattgcctacgcggggcgcgtggggttctccgtccgcattgctcggtcgcggcggtccaagtgtaacgagtccatcatcatgctgaggtttgtctgctccaaggaagggttcagcaaggagaagcatgtcgtcgcggggaagaagacgaggaagcggcctgcttccatccgggagggatgcaacgccatgctcgaggtgctacgcagaggcgatagcaagtggattgtcaccaagcttgtcaaggagcataaccatgaggttgggatgcccagcagagtgcactacattgccatggagggtgatacggtggtcgacccttacattggtatggagtttgaatcacttgaggccgccaagacattctactactcatacgcgacccgtgtcgggtttgaagctcgtgtgcgtcagtcccgcaagtcgcaagatgagtcactcaagatgctgaagcttgtgtgctcaaggcaccgataccattcaggaagagagaccaatggaggggatcccaagagagtgcaggccttggatccctccagggatggctgtgatgcattatttgagataattcggaaagacagagatgcctggacggtctctaaactcatcttagagcatactcatgagctgaacccggcaccaacaagtagagttcgctgtattcgctcacagggtgaggtacttgttattgcaaagaacttctctgacacacgcaatctcctattgaacggtctagatttccagcatcctagagagttccagtataatgatttagggccagaggatgctcaaagcttactcagatatctcaagaacacacaaagcgaggatcctgcttttttctatgctgtgcagcttaacagtaatggacacacagccaatattttctgggctgatgctaaagctaggatggcttactaccattttggtgatgttgttaggcttggtacactgtgcagaaacagcaaagagtatatacctattgccatattttcaggcatcaatcatcatttgcagcctgttgtctttggctgtgcactaattgttgatgattctgaagcatcgtttgcatggttatttgaaaaatggcttgaagcaatgcctgtgggccctcctgtctcgttggtattagagtttaaacaagaaatggctgccgcagctaccaaaatactacctgatactcattgtacgttctgtgagaagcatattttgggcactgtcagggaagagctaggaagtttgtatccagaaccagaactagaccatttcattactgatctgagaaagtgcattgactgctgcagattagaagaatcatttgaatcatgttgggattctgtcatcagaaaatatggcttcagaaataatgaactattacagtctctatatgaaattcgcagacaatgggcccctgcatacacaaggaaggtattctgtgccagaaatctactgccacaaagctgtcagaatcttgaaaatgttatcgagaagcacttctcatccaagacccagttatgggtggccgttcagcaacttggacaagctgtttgtaatttttatgaaaaggaaactcaggcagattatctgacaacatttcaaatggcaacagttaggactgcatcacctcttgaaaagcaagcaagttcaatattcaccaggtcaatatttgaaaaatttcaggatcagtttgccgagtcctttgggtaccatgcagatagacttgaggatgacatgctacacaagtatcgtgtcacagtaagtgaaggggatgaggaggcacatactgtttctttcaatccagaaaaaaagacagtgggttgtagttgctgcctgtttgagagctgcggcatcttgtgtcggcatgctcttcgtgttttcattattgaaggtgtgcgtgctctgccaaaggcttatatcttgaaacgctggacaaagcatgcaaaaagtattgccactgtagatgattacattgatctaagaggatgtcgtgacgatccttcaaccacaatgtacaatgatctccattgtgacgcaatcaaatgtgcaaaagagggttcggcatcctctgagctctatagtgttgctaaagaggcattgcacaaagctcttgatgaggtcgtgactttaaggaaaatcagagaccagcaaaatctacaaagctgtaaaaggccgatcaagaagtctgctaagggaaaagattcagatcattctactatcataagctcaacaaggtcagcatccaaaaattctctcttggagattgatgatattacatgaccatatatcatgagtaataaggaaataatgcaattttacctgttctgacttgtacaatagtagctcattcgatctcataattaccacttaaattgtagctcattcgatctgataactaccacttagattgtagctgattttagttgtttctattttctgcttgtagtgcatatatgactgtaaggggtctagtgaacccttgaggcaccaatattagaaaaaggttgtggattttttttataactttactgtaaaatggagctcttttttgtata
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| CDS seq | atggagatcgacgggcaggaggcagggcacgagcacgacgggatgatggagccgcaggtggtggacctcgaggaggaggaggaggacgacagcatcaacttctgggcctcgctgggcgtccatgccgtcgaccagatgccgctgcacggcggcgtccagatcgtcgaccagccgtcgccgccgccgcaggagcaggcgcaatcgcagtcgcagtcggtccgcaaggacctgttcccggtcgactccgacccctgccttgagccccgggttgggatggagttcgagtccggcgaggccgccaagaccttctacattgcctacgcggggcgcgtggggttctccgtccgcattgctcggtcgcggcggtccaagtgtaacgagtccatcatcatgctgaggtttgtctgctccaaggaagggttcagcaaggagaagcatgtcgtcgcggggaagaagacgaggaagcggcctgcttccatccgggagggatgcaacgccatgctcgaggtgctacgcagaggcgatagcaagtggattgtcaccaagcttgtcaaggagcataaccatgaggttgggatgcccagcagagtgcactacattgccatggagggtgatacggtggtcgacccttacattggtatggagtttgaatcacttgaggccgccaagacattctactactcatacgcgacccgtgtcgggtttgaagctcgtgtgcgtcagtcccgcaagtcgcaagatgagtcactcaagatgctgaagcttgtgtgctcaaggcaccgataccattcaggaagagagaccaatggaggggatcccaagagagtgcaggccttggatccctccagggatggctgtgatgcattatttgagataattcggaaagacagagatgcctggacggtctctaaactcatcttagagcatactcatgagctgaacccggcaccaacaagtagagttcgctgtattcgctcacagggtgagcatattttgggcactgtcagggaagagctaggaagtttgtatccagaaccagaactagaccatttcattactgatctgagaaagtgcattgactgctgcagattagaagaatcatttgaatcatgttgggattctgtcatcagaaaatatggcttcagaaataatgaactattacagtctctatatgaaattcgcagacaatgggcccctgcatacacaaggaaggtattctgtgccagaaatctactgccacaaagctgtcagaatcttgaaaatgttatcgagaagcacttctcatccaagacccagttatgggtggccgttcagcaacttggacaagctgtttgtaatttttatgaaaaggaaactcaggcagattatctgacaacatttcaaatggcaacagttaggactgcatcacctcttgaaaagcaagcaagttcaatattcaccaggtcaatatttgaaaaatttcaggatcagtttgccgagtcctttgggtaccatgcagatagacttgaggatgacatgctacacaagtatcgtgtcacagtaagtgaaggggatgaggaggcacatactgtttctttcaatccagaaaaaaagacagtgggttgtagttgctgcctgtttgagagctgcggcatcttgtgtcggcatgctcttcgtgttttcattattgaaggtgtgcgtgctctgccaaaggcttatatcttgaaacgctggacaaagcatgcaaaaagtattgccactgtagatgattacattgatctaagaggatgtcgtgacgatccttcaaccacaatgtacaatgatctccattgtgacgcaatcaaatgtgcaaaagagggttcggcatcctctgagctctatagtgttgctaaagaggcattgcacaaagctcttgatgaggtcgtgactttaaggaaaatcagagaccagcaaaatctacaaagctgtaaaaggccgatcaagaagtctgctaagggaaaagattcagatcattctactatcataagctcaacaaggtcagcatccaaaaattctctcttggagattgatgatattacatga
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| Protein seq | MEIDGQEAGHEHDGMMEPQVVDLEEEEEDDSINFWASLGVHAVDQMPLHGGVQIVDQPSPPPQEQAQSQSQSVRKDLFPVDSDPCLEPRVGMEFESGEAAKTFYIAYAGRVGFSVRIARSRRSKCNESIIMLRFVCSKEGFSKEKHVVAGKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHEVGMPSRVHYIAMEGDTVVDPYIGMEFESLEAAKTFYYSYATRVGFEARVRQSRKSQDESLKMLKLVCSRHRYHSGRETNGGDPKRVQALDPSRDGCDALFEIIRKDRDAWTVSKLILEHTHELNPAPTSRVRCIRSQGEHILGTVREELGSLYPEPELDHFITDLRKCIDCCRLEESFESCWDSVIRKYGFRNNELLQSLYEIRRQWAPAYTRKVFCARNLLPQSCQNLENVIEKHFSSKTQLWVAVQQLGQAVCNFYEKETQADYLTTFQMATVRTASPLEKQASSIFTRSIFEKFQDQFAESFGYHADRLEDDMLHKYRVTVSEGDEEAHTVSFNPEKKTVGCSCCLFESCGILCRHALRVFIIEGVRALPKAYILKRWTKHAKSIATVDDYIDLRGCRDDPSTTMYNDLHCDAIKCAKEGSASSELYSVAKEALHKALDEVVTLRKIRDQQNLQSCKRPIKKSAKGKDSDHSTIISSTRSASKNSLLEIDDIT |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0004390 | OsLiXu_08g0004390.01 | Chr08 | 3944906 | 3947766 | + | NAM | ||
| CDS seq | atggagatcgacgggcaggaggcagggcacgagcacgacgggatgatggagccgcaggtggtggacctcgaggaggaggaggaggacgacagcatcaacttctgggcctcgctgggcgtccatgccgtcgaccagatgccgctgcacggcggcgtccagatcgtcgaccagccgtcgccgccgccgcaggagcaggcgcaatcgcagtcgcagtcggtccgcaaggacctgttcccggtcgactccgacccctgccttgagccccgggttgggatggagttcgagtccggcgaggccgccaagaccttctacattgcctacgcggggcgcgtggggttctccgtccgcattgctcggtcgcggcggtccaagtgtaacgagtccatcatcatgctgaggtttgtctgctccaaggaagggttcagcaaggagaagcatgtcgtcgcggggaagaagacgaggaagcggcctgcttccatccgggagggatgcaacgccatgctcgaggtgctacgcagaggcgatagcaagtggattgtcaccaagcttgtcaaggagcataaccatgaggttgggatgcccagcagagtgcactacattgccatggagggtgatacggtggtcgacccttacattggtatggagtttgaatcacttgaggccgccaagacattctactactcatacgcgacccgtgtcgggtttgaagctcgtgtgcgtcagtcccgcaagtcgcaagatgagtcactcaagatgctgaagcttgtgtgctcaaggcaccgataccattcaggaagagagaccaatggaggggatcccaagagagtgcaggccttggatccctccagggatggctgtgatgcattatttgagataattcggaaagacagagatgcctggacggtctctaaactcatcttagagcatactcatgagctgaacccggcaccaacaagtagagttcgctgtattcgctcacagggtgagcatattttgggcactgtcagggaagagctaggaagtttgtatccagaaccagaactagaccatttcattactgatctgagaaagtgcattgactgctgcagattagaagaatcatttgaatcatgttgggattctgtcatcagaaaatatggcttcagaaataatgaactattacagtctctatatgaaattcgcagacaatgggcccctgcatacacaaggaaggtattctgtgccagaaatctactgccacaaagctgtcagaatcttgaaaatgttatcgagaagcacttctcatccaagacccagttatgggtggccgttcagcaacttggacaagctgtttgtaatttttatgaaaaggaaactcaggcagattatctgacaacatttcaaatggcaacagttaggactgcatcacctcttgaaaagcaagcaagttcaatattcaccaggtcaatatttgaaaaatttcaggatcagtttgccgagtcctttgggtaccatgcagatagacttgaggatgacatgctacacaagtatcgtgtcacagtaagtgaaggggatgaggaggcacatactgtttctttcaatccagaaaaaaagacagtgggttgtagttgctgcctgtttgagagctgcggcatcttgtgtcggcatgctcttcgtgttttcattattgaaggtgtgcgtgctctgccaaaggcttatatcttgaaacgctggacaaagcatgcaaaaagtattgccactgtagatgattacattgatctaagaggatgtcgtgacgatccttcaaccacaatgtacaatgatctccattgtgacgcaatcaaatgtgcaaaagagggttcggcatcctctgagctctatagtgttgctaaagaggcattgcacaaagctcttgatgaggtcgtgactttaaggaaaatcagagaccagcaaaatctacaaagctgtaaaaggccgatcaagaagtctgctaagggaaaagattcagatcattctactatcataagctcaacaaggtcagcatccaaaaattctctcttggagattgatgatattacatga
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| Protein seq | MEIDGQEAGHEHDGMMEPQVVDLEEEEEDDSINFWASLGVHAVDQMPLHGGVQIVDQPSPPPQEQAQSQSQSVRKDLFPVDSDPCLEPRVGMEFESGEAAKTFYIAYAGRVGFSVRIARSRRSKCNESIIMLRFVCSKEGFSKEKHVVAGKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHEVGMPSRVHYIAMEGDTVVDPYIGMEFESLEAAKTFYYSYATRVGFEARVRQSRKSQDESLKMLKLVCSRHRYHSGRETNGGDPKRVQALDPSRDGCDALFEIIRKDRDAWTVSKLILEHTHELNPAPTSRVRCIRSQGEHILGTVREELGSLYPEPELDHFITDLRKCIDCCRLEESFESCWDSVIRKYGFRNNELLQSLYEIRRQWAPAYTRKVFCARNLLPQSCQNLENVIEKHFSSKTQLWVAVQQLGQAVCNFYEKETQADYLTTFQMATVRTASPLEKQASSIFTRSIFEKFQDQFAESFGYHADRLEDDMLHKYRVTVSEGDEEAHTVSFNPEKKTVGCSCCLFESCGILCRHALRVFIIEGVRALPKAYILKRWTKHAKSIATVDDYIDLRGCRDDPSTTMYNDLHCDAIKCAKEGSASSELYSVAKEALHKALDEVVTLRKIRDQQNLQSCKRPIKKSAKGKDSDHSTIISSTRSASKNSLLEIDDIT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.692635 | 0.766462 | 0.499212 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0166400 | RBH | 0.575565 | 0.658086 | 1.650285 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g06930 | RBH | 0.389008 | 0.497235 | 0.572660 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0166400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0004530 | RBH | 0.551223 | 1.371988 | 4.205722 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004600 | RBH | 0.000000 | 0.000000 | 1.587875 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004550 | SBH | 0.663637 | 1.091617 | 2.922784 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0004550 | RBH | 0.143599 | 0.110092 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004340 | RBH | 4.221185 | 9.636608 | 7.688003 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0071200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004170 | RBH | 0.166915 | 0.349517 | 0.387331 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0063300 | RBH | 3.596159 | 11.602201 | 12.54617 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004240 | RBH | 0.054276 | 0.414238 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004250 | RBH | 0.210823 | 24.411478 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004120 | RBH | 1.679464 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004280 | RBH | 0.213676 | 3.056194 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004210 | RBH | 0.111948 | 2.067501 | 1.261862 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004150 | RBH | 0.183620 | 8.171165 | 2.808344 |
