Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0028190 | OGI:04093890 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:30563194-30565292 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtggcaatcagattactcaccgttgttttggggtttgttgcgcaggtgttcttatgtgagttccagtagacttcttaatactttgggtgcatatttctggtcgtcactcctgaagacttagtggtgtttagctagttgaattggcatacattatggatcaaaataccatcatggcttattggcttaataactgtggaaaatgataagtttgcagtgttctgcaactgatattaaggtttgcatttatttttgctccagctctatatttgctaccataaaatgtgttctagcagcatttaagttcttagttaccatttcttagagaaatttaatggcatcacaataatagcatcaaatcacattagtccatcatggagtcccttcagactcaggctaatattctgctcaacatgttcctatgaagattaatatgaactgatgtacggttccaaactttcagatttagatctgattattggattgcaagacagatgtggcagaaacacatctttggaaaccaacaatgtggcagttacgtgcttgaaggtataactcccatagtctcatctcgaatggtacgcagtcttgaacatttgcatttcaaatgatggcaatgcttcgatgctactgctttgagttgaccagagcattccagagcacaacataacatatgtcaggagatcttatttttcatgtttggactataaatagactaccatttgatccccctgtgtcgctaattttataccattcctggaaaatgtgtatatcattttctttgctcgatctagtaaacaccgttggaaaatgttcttctcctcatctccattttctgaacgttgagttatgtgattacttaatggccttctcattgctttccatgtaaaagtaatttgatttttgttctgtccactaaataaggatgccagtattcaacaagctgcccacttgcaacctcagtgttttgattacgatgaatttccagcgttttgatatttgcttttggctttaatttttgccacccatacaaggttttgagcattagtcatagctattgttgcttaacataatttaatggtgaacagggccttcacaagaataaccatcttatcatgtcagtgtatcatggagtcccttcagatttcagtctattattatgctcaataggttcttatggaaggtacttttgtaattgttttatgttccatttgcagagaagtagaaatatgaactgatatgtggttcccaaactttcagattcataagtatgacttttgaattgcttgctagttgtgcgctgtagtacgctagcacagctttgaaagtgaatagcgtggcaataaacaggcctgatagctgccatagactcaatgtgtgttcaagtgccaagtagtcctggacactatttgcacttcaaattatatgaatgctttcatgttattgaacagaccataattttcctctgcagcgttgtacaggttaggaggactacttattcatgttacaagtatcattgtattattcttatctttatatcgggttatgtggctacttaattgtttctcattgctttgcatcacaacgttcaattttgtattaggagtctttggaacacccagattctttgctggtttggatcccatactcggggggctgcaggacggacaagagcagcagctttctcctcttcagtgttcctccaagctgcaggagcttcatacggatgactttgcaggtgtccacgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggatggaacgacgaggtggagcgtttcacgaaggagcaagaggaggcacttcagcttctcatctccctccaggacctccatttttggggatgcactaatctgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcatcggctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcagagctagctggaacgagaagttcaaacagcggtgcaggaagctaaagggaaccatcccagaaatcatactagactaa
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| CDS seq | atgtggcaatcagattactcaccgttgttttggggtttgttgcgcagatttagatctgattattggattgcaagacagatgtggcagaaacacatctttggaaaccaacaatgtggcagttacgtgcttgaaggtataactcccatagtctcatctcgaatgggccttcacaagaataaccatcttatcatgtcagtgtatcatggagtcccttcagatttcagtctattattatgctcaataggttcttatggaaggttaggaggactacttattcatgttacaagtatcattgtattattcttatctttatatcgggttatgtggctacttaattgtttctcattgctttgcatcacaacgttcaattttgtattaggagtctttggaacacccagattctttgctggtttggatcccatactcggggggctgcaggacggacaagagcagcagctttctcctcttcagtgttcctccaagctgcaggagcttcatacggatgactttgcaggtgtccacgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggatggaacgacgaggtggagcgtttcacgaaggagcaagaggaggcacttcagcttctcatctccctccaggacctccatttttggggatgcactaatctgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcatcggctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcagagctagctggaacgagaagttcaaacagcggtgcaggaagctaaagggaaccatcccagaaatcatactagactaa
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| Protein seq | MWQSDYSPLFWGLLRRFRSDYWIARQMWQKHIFGNQQCGSYVLEGITPIVSSRMGLHKNNHLIMSVYHGVPSDFSLLLCSIGSYGRLGGLLIHVTSIIVLFLSLYRVMWLLNCFSLLCITTFNFVLGVFGTPRFFAGLDPILGGLQDGQEQQLSPLQCSSKLQELHTDDFAGVHVKPICRLLSSSLTKLVLGWNDEVERFTKEQEEALQLLISLQDLHFWGCTNLQCLPAGLHRLTSLKRLEIIGCPSIRSLPKGGLPSSLQELDVRASWNEKFKQRCRKLKGTIPEIILD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0028190 | OsKeNa_04g0028190.01 | Chr04 | 30563194 | 30565292 | + | NAM | ||
| CDS seq | atgtggcaatcagattactcaccgttgttttggggtttgttgcgcagatttagatctgattattggattgcaagacagatgtggcagaaacacatctttggaaaccaacaatgtggcagttacgtgcttgaaggtataactcccatagtctcatctcgaatgggccttcacaagaataaccatcttatcatgtcagtgtatcatggagtcccttcagatttcagtctattattatgctcaataggttcttatggaaggttaggaggactacttattcatgttacaagtatcattgtattattcttatctttatatcgggttatgtggctacttaattgtttctcattgctttgcatcacaacgttcaattttgtattaggagtctttggaacacccagattctttgctggtttggatcccatactcggggggctgcaggacggacaagagcagcagctttctcctcttcagtgttcctccaagctgcaggagcttcatacggatgactttgcaggtgtccacgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggatggaacgacgaggtggagcgtttcacgaaggagcaagaggaggcacttcagcttctcatctccctccaggacctccatttttggggatgcactaatctgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcatcggctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcagagctagctggaacgagaagttcaaacagcggtgcaggaagctaaagggaaccatcccagaaatcatactagactaa
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| Protein seq | MWQSDYSPLFWGLLRRFRSDYWIARQMWQKHIFGNQQCGSYVLEGITPIVSSRMGLHKNNHLIMSVYHGVPSDFSLLLCSIGSYGRLGGLLIHVTSIIVLFLSLYRVMWLLNCFSLLCITTFNFVLGVFGTPRFFAGLDPILGGLQDGQEQQLSPLQCSSKLQELHTDDFAGVHVKPICRLLSSSLTKLVLGWNDEVERFTKEQEEALQLLISLQDLHFWGCTNLQCLPAGLHRLTSLKRLEIIGCPSIRSLPKGGLPSSLQELDVRASWNEKFKQRCRKLKGTIPEIILD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.071906 | 0.772106 | 0.755951 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0626500 | SBH | 1.449855 | 1.839052 | 2.533673 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53496 | SBH | 0.332108 | 0.119212 | 0.141505 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0626500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027430 | SBH | 0.000000 | 2.896392 | 3.144222 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028110 | RBH | 0.000000 | 0.000000 | 0.769872 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027930 | SBH | 0.544536 | 1.443015 | 6.525374 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027670 | RBH | 0.015382 | 0.066013 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027910 | SBH | 0.218487 | 0.000000 | 4.331557 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0503000 | SBH | 1.1102425 | 2.785596 | 3.067995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026620 | SBH | 0.066260 | 0.133214 | 0.369819 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0507000 | SBH | 0.2745435 | 0.2969485 | 0.9896195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027030 | SBH | 0.000000 | 0.258998 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026890 | SBH | 0.093515 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026930 | SBH | 0.0 | 7.217812 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027460 | SBH | 1.428781 | 3.802756 | 1.482755 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027550 | SBH | 0.406676 | 3.068031 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026840 | RBH | 0.173872 | 1.972238 | 1.368266 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026740 | SBH | 0.721525 | 4.148806 | 0.973180 |
