Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLiXu_04g0027460		OGI:04093890 \| 16/16			LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)			Chr04:34168271-34180836		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		atggcagagtcagtggccatccgcggtgcacagtgggttgtgagcaaggcgctgagcccgctgtccgatggcttggtagaggcgtgggcggccagctcggcgctcggccccaacatcgaagctctcaagacagagcttctctacgcacaggccatgctcgacaatgcccgtggcagggagatccgaagccatgctctggtggagttgctgcagaagctacggcggctagcgtacaacgccgaggacgtgctggacgagctggactacttccgcatccaggacgagctcgaaggcaccttcgagaccgtcgaccgtgggtgcttccacgacctcgtccgtgatgcacgccacacaaccaaggctgctgccaagcagctcgagtgcacctcctgcttctcttcttcgtccatgccagaacatggtggcgcaagaaggcgggtgctgtgtggcgcttggctgtgctgcggcgccgatgagaaacaatcctgcaagtgcgcgtgccagctcgtcaaccgtgctagcagcactgtccgcgctgtcggtaaacgactctcttctcttctaccaatacatgatgatggtaaaacaccaaagatggattttgatagagtggatgcctctagaagaatgaggcgcatagtagaacaactacaacccatatgtgctaaagtatctaccattcttgatctagagttgttaggctctgccattgccaaattggagttcatgggctctaggcgtggcattggcggtgatattactacaagcagatccacaactacctcagaaagtatagagcctaaactgtatggaagggatcctgagaagaataccattgtagaaaatattaccaagggtgtgcactgccatcaacatctatcagttcttcctatagttggtcttgggggcataggaaagacaacccttacacagtacatatataatactaaagaagtgcaagatcatttccaaattagagtttgggcatgtgtgtcgcttgacttcaacgtgtacaagttgacacaagagattttaaattctatccctaaagctgaagatgaaatagatgatagtcagctgcaaagtttggaccaacttcagaagttgattgaaaagagattaaaacaaaaaaggtttttagttgttttggatgatatatggaagtgtggtgaagaagagtgggaaaggctcctagttccatttagaaaaagtcaagtaaatgggaacataattctagtcacaacccgattctttgatgtggcagaaaaggttaaaactaccagttgtaaagtgacacaacttgacagattgaatcctgaagaattttggaagttctttatggcatgtgtgtttgggtatggtgaaactaagcaacacaaagaagatagggacttgattaacattgggaaacaaatagttgaaaaactaaaaggttctcccctagcagccaaaactgtaggtaggttattgagaaataacactactcgagactattggacaagagttcttcaaagtaaagaatgggatttacaaaccaatgattatgatattatgcctgctttgaagcttagctatgactacctcccttttcatcttcaacagtgcttctcttattgtgctttgtttcctgaggaccacaagtttagcagtgaggagctaattcacttctggatagggctagacattctacatccagatcacccaagccaaacaattgaagatatagggcacaactacttgaatcagttggttaattatgagtttttcaaaaaagaaatagatgagcagaaaacatactatgctatgcatgacctgctacatgatctagcacaaaaggtttcatcacaagaatgtctacatatagattcttccagtacaacacctatagaaatacctccaactatctatcacttgtccattagtctaagctctactaatagtgaggatggagctaccaaaggaagtttcaagaaagaactagatagaatagggagtagattgaaatctgaaaatctccactccttaatgatttttggacaatatgatcaaagctttgttgttactttatgtgatatgtttaaacatgcaaaatccctacgtcttgttcatttgtcaacaatgacacacccagtggattccatactttacaacttctcaaaacttctgcaccttcgctacataaagcttgagtcaaattatagagataaatcacatttaccagcaagcctctcaagattttatcacttaagggtcttggacattcaagaattgcggggtgctcacagtttccctaaggatatggccaatctatcaaagttgcgtcatttccttgtcccacctgatgcttctgaactccactccaatatttctagcgtgggaaaacttcattgtttacaagagctcaagcatttcgaagtaaaaaagaagggtgatggttttagcttaaaggaattgggggaactgacagaacttggaggaacactaagcatctttaatcttgagtacgtacaagtaaaggaagcacatgaagctaacctgctatacaaaagacgcttacatcatttagcattaaactggagtgacaaccgatctgacaagaatcctggcatagaaaatcaaatacttgagagccttcagccacatagcaatcttagtgagctacggatccaacatggaggctcaacttgcccaacatggctaggtacaagcctctcagtcaaaggtttagaggctctttgtctagttggtacaaattggaaaatgcatcctcctcttggtgaagtgtggcttattgatatgtctggtggagagtattttggttgtactaccagccaatactttcgaaacttaaaaagactggaaattattggactgtcaaattttagaaaatgggatgcaaaagaaatttgccctatgtggttttcagtcctagaaacactcactgtgacagattgcagtgaactaatagaactaccattttcatattatactcaacagccattggaaggtgatgggaaagaaacttggtttcctaggctaagagaggctaaaattatgaggtgtccgaaattggtgtcattgcctcctattccttacactcggactttgcgctatgttgaaataaataacgtagggataagcttggaaaagttatgttacgagagcgcaacatacaccttagaaattagagtaaaagatggtctaaatggcttagatgataaggttctagctttctataatttatcccaactacaagagttgatgatcaaggattgcccacctttggcggggtgttaccttcaaatgttgacttcactgaagatactcagacttgatagttcaagtgtcgtgttccatctgtcagaaagtttgagtgactataagtggcaagttccagttgagtacctatctatttctagctaccatggaagtgggaaagcattgtcacaggttctctctcatctcccaaagctctcagagttgactcttcgggactgcaacaagattacacggatgtgtatagctgtagaacagcagcaaacaactgctgttgagctggaggatacacaagcagtcgaatctattcagcagcagcaagtagcagaggatctggtggaggaagagggagtggtaccccagctagccatggatcaagaagatgacgatgggatgctgatcttcccagcacacctctccaactctctacagcgactagatctctccagttgcccggagcttatcctagatgttgctcgtcctgttcttcccaccagccacgaggaagggacaggaggatgggggctccaatccctgcactccctccagatactatatatatggcattgccccaagtttctctccacctacaatgccccaggctgccctttcccgtcctccctgcaatgcctcaacattgatggctgtatggagggcgtgcagaccctggatttcatctcaaacctcaacttcctcacagaactacacatcgaagattgtggggaggatttgagatgcgagggtctgtggcctctcctcacccagggtcagctcagcgaattaataagagtctatggaacacccagattctttgctggtttggatcccatactcGgggggctgcaggacggacaagagcagcagcttcctcctcctcttcagtgttcctccaagctgcaggagctcaggacggatgactttgcaggtgtcctcgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggattcaacggcgaggtggagcgcttcatgaaggagcaagaggaggcccttcagctcctcacctctctccgggacctccaatttttggcatgcaggaagttgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcgtcagctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcggatactgcaacaacgagaagctcaaacagcggtgcaggaagctaaagggaaccatcccaaaaatcatactagactaacaaaggtaacaaatgcttccttgttccctctacctagtaagtcccatggcatcatctgttggggttttgatgtagtacttactacacaatctgattaaatgtttgttttttgcaatctgtcatgcagggcactgccttcaagttgtacattcctgtagccttgtagaacttcacaatctatccatgcactgttccccaacatgtggatctcatgtgatatcctctacctgtacatagatcttgtaagtaaacgttgaatggaacttgactcctgatgtaccatatccttgcctagatattcccagaaaactttttaaaacccatatataagaaacagctgtcatataggtctgatccctgtcatgaacaagttgctgcttgttgtaagcttgtctttgattaaacatgaatatatcttatgcttcaaggtagcatagtgtttttcttacgggctgtgtatttagggaatggttatggttaattagttgatgcaaactatttccattatctaaaaaatggtattacatagttgcataatcttgtaaatttacttaacaagtgagatgtcccaaatattttaattcctatcaaacagatgcactaagacgacctgtttctaatttttcctctttagtaatggatgtttccaatttttcctccgtagtaatggaagtaataagaatagatatttaaaatcatttttgagattttcttataagttgcaaatactaatttaatccacagttaatgccatttcagagttatgtggcaatcagattactcaccgttgttttggggtttgttgcgcaggtgttcttatgtgagttccagtagacttcttaatactttgggtgcatatttctggtcatcactcctgaagactaagtggtgtttagctagttgaattggcatacattatggatcaaaataccatcatggcttattggcttaataactgtggaaaatgataagtttgcagtgttctgcaactgatattaaggtttgcatttatttttgctccagctctatatttgctaccataaaatgtgttctagcagcatttaagttcttagttaccatttcttagagaaatttaatggcatcacaataatagcatcaaatcacattagtccatcatggagtcccttcagactcaggctaatattctgcccaacatgttcctatgaagattaatatgaactgatgtacggttccaaactttcagatttagatctgattattggattgcaagacagatgtggcagaaacacatctttggaaaccaacaatgtggcagttacgtgcttgaaggtataactcccatagtctcatctcgaatggtacgcagtcttgaacatttgcatttcaaatgatggcaatgcttcgatgctactgctttgagttgaccagagcattccagagcacaacataacatatgtcaggagatcttatttttcatgtttggactataaatagactaccatttgatccccctgtgtcgctaattttataccattcctggaaaatgtgtatatcattttctttgctcgatctagtaaacaccgttggaaaatgttcttctcctcatctccattttctgaacattgagttatgtgattacttaatggccttctcattgctttccatgtaaaagtaatttgatttttgttctgtccactaaataaggatgccagtattcaacaagctgcccacttgcaacctcagtgttttgattacgatgaatttccagcgttttgatatttgcttttggctttaatttttgccacccatacaaggttttgagcattagtcatagctattgttgcttaacataatttaatggtgaacagggccttcacaagaataaccatcttatcatgtcagtgtatcatggagtcccttcagatttcagtctattattatgctcaataggttcttatggaaggtacttttgtaattgttttatgttccatttgcagagaagtagaaatatgaactgatatgtggttcccaaactttcagattcataagtatgacttttgaattgcttgctagttgtgcgctgtagtacgctagcacagctttgaaagtgaatagcgtggcaataaacaggcctgatagctgccatagactcaatgtgtgttcaagtgccaagtagtcctggacactatttgcacttcaaattatatgaatgctttcatgttattgaacagaccataattttccgctgcagcgttgtacaggttaggaggactacttattcatgttacaagtatcattgtattattcttatctttatatcgggttatgtggctacttaattgtttctcattgctttgcatcacaacgttcaattttgtattaggagtctttggaacacccagattctttgctggtttggatcccatactcggggggctgcaggacggacaagagcagcagctttctcctcttcagtgttcctccaagctgcaggagcttcatacggatgacttcgcaggtgtccacgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggatggaacgacgaggtggagcgtttcacgaaggagcaagaggaggcacttcagcttctcatctccctccaggacctccatttttggggatgcactaatctgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcatcggctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcagagctagctggaacgagaagttcaaacagcggtgcaggaagctaaagggaaccatcccagaaatcatactagactaataaaggtaacaaatgcttccctgttccccatacctaagtcccatggcatcatctgttgatcttgtgcaatatcctcttcctgtacatatattatgtaagtagatgtagaatggaacttcactcctgatgtaccatttccatgcatgcacaacaaacatttttaaaatccatactgaagaaagagatgccaatatgccatataggtatcccacctgtcatgaattgttgctgttgttgtacacttgcctttgattaaaaacgaatatatcttaatcttatgctttaaggttgcatggtttttcagtaccatcagtgtatttagggaatcgttatggttagttgatgtaaaccatttctgttatgtgaaaaaatgttcatggttagttgcataatcctgtaaattcacttgtgctgtaagatgttccaaacactatatcaaacagatgcactaagttgaccagtttccaatttttactctttagtagtggaattagtgagaacaggtaacttaaatcattttggagatttttttctcataagattcaaatactaatttaatccatagttaatgccatttcagagttatgttgcaatcagattactcaccattgttttgggagtttgttgtgcaggtgttcttttgtgagttccagtaggcttcttaatacttcggttgtattatattttggtcatcactcctgaagaaccagtggtgttcagctagttgcactgacatacattatggatcaaaatatcatcacggcataataatggtggaacatggtaaattccagtgctctgcaactgatattgtttttcactccagtggtacgtttgctactataaaaggtgttctaacattgtttaatttattagttaccatttcttagtgaaatttaatggcgtaccggaccgtcacaagaaaacccaatcaaatcatatcagtgcatcatggagtcccttcagactctggctagtattatgctcaacatgttctcatgaaacagtagttgtataactatttttatgttctccttgtgaaaaagtagtaatatgaactgacgtatggttccaaactttcagattcagaactacgattattggattgctagatagtgcggcagcggcacagctttggaaaccaacagtgtggcaaactggcagttacatgcttgaaggttttagttcccatactctcagtgttctcaaatggtatgcagtcttgaacatttgcatttcggaagatgggtatgcttctgtgttactgcttaggtatttagctaaccagatattccagcaaagcagaacagatttcaggagtatttatttttcatgtttgagctataaatagactactatttgatccacctgtgacgctaatttataccattcctgggagttgttaagtatgtcattttgtttccttgatggtcgatctagtaaacaccgttggaaaatgttttcctcctttagttcatgttgttttatcttaaaacttcagaacatctccaatttctgaacatgtacagtactgatatttgaagtaaaattgtgtattttttatctattttttggaaacattccaccctcttatcactggatgaatattacaaacaagggaacaaactgtacaatggcaagacaagtgaacgacacgatggtcaaaagaagagaagaaaaactagtgtgcctagcacactcttgaagcgcaattgaacctctgtaactccggtctgtcggcttcttcatattgagttgtacggttacttaattgccttctcactgatgtccatgtcaaagtaattcattttttttgttatgtccactaaatcaggatgcacagtatttaacgtgctgcccaacttcatacttgcaatctcgcttaactagtgacagaatggtaacattgtaagtgcctcactactattaatcttcttcctttacaattagatgcatactgttggaagttaatgtcaaattatattattacaatgatacttcagttctgtatatcatctccttggaatccccatgtcctcacaaaaagtgtgattggttcaggcagtcttcttctactgacagaggcatgaaaatggtactttctggtggatgcaactttatctgttcaaaatgctaatgtgtcaatggtagacgtaatttttggaccacaggttgtaaaatcagttctgaatctcctaggaccttgatgtcttggttgcagcctctgcaagctacaaatctcttcccttgtgctatcctcaatgacttgctcttcattttgttcatccatttatgcagtgaaccaaagcgccttagattagactgtttgcactctattaccgggaattgttgcagcgaacttccaaacaggtatcctaaatcattatttgacattttttctcaaagtttgcaaatactaatttgatccacagttattgtcatttcatagtaacttctcattgagattacacactattgttttggggttttttcggcaggttgtcacttatgaggaattagtagtgtttggctagtcatggcataacaactgtggaaaacaatgagtgttcagtgttttgctacttggattaaggtttgcagttctcttgctccagtgctatatttctgacacatacaaggtgtactagaatccttcattcttatagttatgttgcttaacgaaatttactggtgtacagaacactcacaagaatagccattacatcatattagttcattgtggagtcccttcagatctcaggttaatattatatggaacgcgttaatatgagaggtacgtctttagctgttttatgttctactcacgaaaaagtagtaatatgaagatatgtatggtttttaactttcagattcataactatgattgttggattgcttgatatgtatcgatatatgacccagcttttggaaccaacaatgcagtagtaatatgcttgaaggtatagcttccataatctccaaatattttaaactattttgccatcttgactcctgaacacgatttgcactttaatggatgtgaatgcttccatgtatataaaagaagaaatcgcgatgtggagggtagctgggatcttctcccaattcggcgagtaatcgttgttgtattgtctctttctccttcgtttgttcacgatgtgtctgggatctctcccggactagcgcgacattgtaatgtcgctgtaacattcctttgttttcctccccaatcttaatgaaattggtcggccaacctttggccgacccagcaaaaaagaatgcttccatgttactgcttagttattcaactgacctgcactccatagcacaccagtacaagtttgcaggagaacttatattttcattgtttgagctacaaatagattaccatttgattctcatgtgtcagttctttgtgctattcatgaaaacttccttattaagtatgccatgttctttccttcaatctagtattggaattaccattgggaaatatttttctttcccaatccaactttgttgatcttaaggcttcagaacttctacgttttctaaacatttaaattgataatgtttgaagggcattgttttttattcttcatatcaagttgtgctgttatgtatttttcttctcattgctttccatgataaactggttagatttttgaaatgtccatctcttccgaatatttacatcctgcccaactacatggaatcctcatatgagctgacaaaaggtgtattggtttaggtaaatcttctattgacaccaactacatgaaatcggtactgtccaagggatgcagcttaatctgttcaaggcgctaatgtgccaatgccagatgtaatttttgaaccacatgttgcataatatgtagtgagttcccttgttccctatgaacttaaagtcttgtttgcatcctctgcaccccaaaatcccttgcttgtggtatcgtcaatgacttgatgtgcattctgttcatcccttatgcagggaacaaaaggcttagttcaatgaacataaatgactggaattattgcaatgaacgtccaaacagtctagctccttccctttatatggtgagtgctatacaacttgttctagttctttcaaactttagtagctactgcaaagtatttactctgttgagaagtacttacatttttgttgtccactttggcagaagaagacataatatggataagtgctcaattgcactgtctcttctcagcggataaatggcaattgggcaattgatctccacccggtgatctccacccaagctcaacttgaattagatatgcttatgacgactttacaatcccagcagatacatcctgaaagaccagataacagaagctgtacactgagcccggttggatttacgacaacagcatactatgagctaataacatatcatggcatcctatggcgcccggcacacttcatctggattaaagcaataccaaacacctgcaaaatcttcctttggctagcctttcggggaaggctaaacacaaatgataacagggtgaagaaatgctgggcatctgatccacattgtgcggtttgcccggctatagaaacagctaatcacatcattctacgctgcaagttagccactgaaatctggaacaaactcaacctccttgatcaggcaattcagagtgctgacattctacagttcaccgagcatgtcctgggaattctaccgactcaacttaaactgggatggccaatatgcttcgctgcctgttcacacagcttatgaaaagcacgcaatcatagaaccttcagagaagaagaactctccgtaactaatgtgacgcatcaaatcaaggactgcctacacttatggaaaaaccgagttaaaccacaatgtcagccgccaatatgtagttgggcagctctactagcatagatgttgtttttctgtttgtttgtggttctctctaatccctttcttccttcttttctacctcttctttttcttgcctttctgcttgaatgtatttttgttatatctttttttaccaccattaatacaatggttataaggtagagcctctctaccttttcagtcaaaaaaaaatatggataagtgcaagcaagttttcatcaatagaaagcagtgctactt More
CDS seq		atggcagagtcagtggccatccgcggtgcacagtgggttgtgagcaaggcgctgagcccgctgtccgatggcttggtagaggcgtgggcggccagctcggcgctcggccccaacatcgaagctctcaagacagagcttctctacgcacaggccatgctcgacaatgcccgtggcagggagatccgaagccatgctctggtggagttgctgcagaagctacggcggctagcgtacaacgccgaggacgtgctggacgagctggactacttccgcatccaggacgagctcgaaggcaccttcgagaccgtcgaccgtgggtgcttccacgacctcgtccgtgatgcacgccacacaaccaaggctgctgccaagcagctcgagtgcacctcctgcttctcttcttcgtccatgccagaacatggtggcgcaagaaggcgggtgctgtgtggcgcttggctgtgctgcggcgccgatgagaaacaatcctgcaagtgcgcgtgccagctcgtcaaccgtgctagcagcactgtccgcgctgtcgaaagtttgagtgactataagtggcaagttccagttgagtacctatctatttctagctaccatggaagtgggaaagcattgtcacaggttctctctcatctcccaaagctctcagagttgactcttcgggactgcaacaagattacacggatgtgtatagctgtagaacagcagcaaacaactgctgttgagctggaggatacacaagcagtcgaatctattcagcagcagcaagtagcagaggatctggtggaggaagagggagtggtaccccagctagccatggatcaagaagatgacgatgggatgctgatcttcccagcacacctctccaactctctacagcgactagatctctccagttgcccggagcttatcctagatgttgctcgtcctgttcttcccaccagccacgaggaagggacaggaggatgggggctccaatccctgcactccctccagatactatatatatggcattgccccaagtttctctccacctacaatgccccaggctgccctttcccgtcctccctgcaatgcctcaacattgatggctgtatggagggcgtgcagaccctggatttcatctcaaacctcaacttcctcacagaactacacatcgaagattgtggggaggatttgagatgcgagggtctgtggcctctcctcacccagggtcagctcagcgaattaataagagtctatggaacacccagattctttgctggtttggatcccatactcGgggggctgcaggacggacaagagcagcagcttcctcctcctcttcagtgttcctccaagctgcaggagctcaggacggatgactttgcaggtgtcctcgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggattcaacggcgaggtggagcgcttcatgaaggagcaagaggaggcccttcagctcctcacctctctccgggacctccaatttttggcatgcaggaagttgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcgtcagctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcggatactgcaacaacgagaagctcaaacagcgatttagatctgattattggattgcaagacagatgtggcagaaacacatctttggaaaccaacaatgtggcagttacgtgcttgaaggtataactcccatagtctcatctcgaatgggccttcacaagaataaccatcttatcatgtcagtgtatcatggagtcccttcagatttcagtctattattatgctcaataggttcttatggaaggtacttttaccataattttccgctgcagcgttgtacaggagtctttggaacacccagattctttgctggtttggatcccatactcggggggctgcaggacggacaagagcagcagctttctcctcttcagtgttcctccaagctgcaggagcttcatacggatgacttcgcaggtgtccacgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggatggaacgacgaggtggagcgtttcacgaaggagcaagaggaggcacttcagcttctcatctccctccaggacctccatttttggggatgcactaatctgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcatcggctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcagagctagctggaacgagaagttcaaacagcggtgcaggaagctaaagggaaccatcccagaaatcatactagactaa More
Protein seq		MAESVAIRGAQWVVSKALSPLSDGLVEAWAASSALGPNIEALKTELLYAQAMLDNARGREIRSHALVELLQKLRRLAYNAEDVLDELDYFRIQDELEGTFETVDRGCFHDLVRDARHTTKAAAKQLECTSCFSSSSMPEHGGARRRVLCGAWLCCGADEKQSCKCACQLVNRASSTVRAVESLSDYKWQVPVEYLSISSYHGSGKALSQVLSHLPKLSELTLRDCNKITRMCIAVEQQQTTAVELEDTQAVESIQQQQVAEDLVEEEGVVPQLAMDQEDDDGMLIFPAHLSNSLQRLDLSSCPELILDVARPVLPTSHEEGTGGWGLQSLHSLQILYIWHCPKFLSTYNAPGCPFPSSLQCLNIDGCMEGVQTLDFISNLNFLTELHIEDCGEDLRCEGLWPLLTQGQLSELIRVYGTPRFFAGLDPILGGLQDGQEQQLPPPLQCSSKLQELRTDDFAGVLVKPICRLLSSSLTKLVLGFNGEVERFMKEQEEALQLLTSLRDLQFLACRKLQCLPAGLHRLTSLKRLEIVSCPSIRSLPKGGLPSSLQELDVGYCNNEKLKQRFRSDYWIARQMWQKHIFGNQQCGSYVLEGITPIVSSRMGLHKNNHLIMSVYHGVPSDFSLLLCSIGSYGRYFYHNFPLQRCTGVFGTPRFFAGLDPILGGLQDGQEQQLSPLQCSSKLQELHTDDFAGVHVKPICRLLSSSLTKLVLGWNDEVERFTKEQEEALQLLISLQDLHFWGCTNLQCLPAGLHRLTSLKRLEIIGCPSIRSLPKGGLPSSLQELDVRASWNEKFKQRCRKLKGTIPEIILD
Function		-

Transcripts

sorry

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_04g0027460	OsLiXu_04g0027460.03	Chr04	34168271	34178288	+	NAM
CDS seq	atggcagagtcagtggccatccgcggtgcacagtgggttgtgagcaaggcgctgagcccgctgtccgatggcttggtagaggcgtgggcggccagctcggcgctcggccccaacatcgaagctctcaagacagagcttctctacgcacaggccatgctcgacaatgcccgtggcagggagatccgaagccatgctctggtggagttgctgcagaagctacggcggctagcgtacaacgccgaggacgtgctggacgagctggactacttccgcatccaggacgagctcgaaggcaccttcgagaccgtcgaccgtgggtgcttccacgacctcgtccgtgatgcacgccacacaaccaaggctgctgccaagcagctcgagtgcacctcctgcttctcttcttcgtccatgccagaacatggtggcgcaagaaggcgggtgctgtgtggcgcttggctgtgctgcggcgccgatgagaaacaatcctgcaagtgcgcgtgccagctcgtcaaccgtgctagcagcactgtccgcgctgtcgaaagtttgagtgactataagtggcaagttccagttgagtacctatctatttctagctaccatggaagtgggaaagcattgtcacaggttctctctcatctcccaaagctctcagagttgactcttcgggactgcaacaagattacacggatgtgtatagctgtagaacagcagcaaacaactgctgttgagctggaggatacacaagcagtcgaatctattcagcagcagcaagtagcagaggatctggtggaggaagagggagtggtaccccagctagccatggatcaagaagatgacgatgggatgctgatcttcccagcacacctctccaactctctacagcgactagatctctccagttgcccggagcttatcctagatgttgctcgtcctgttcttcccaccagccacgaggaagggacaggaggatgggggctccaatccctgcactccctccagatactatatatatggcattgccccaagtttctctccacctacaatgccccaggctgccctttcccgtcctccctgcaatgcctcaacattgatggctgtatggagggcgtgcagaccctggatttcatctcaaacctcaacttcctcacagaactacacatcgaagattgtggggaggatttgagatgcgagggtctgtggcctctcctcacccagggtcagctcagcgaattaataagagtctatggaacacccagattctttgctggtttggatcccatactcGgggggctgcaggacggacaagagcagcagcttcctcctcctcttcagtgttcctccaagctgcaggagctcaggacggatgactttgcaggtgtcctcgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggattcaacggcgaggtggagcgcttcatgaaggagcaagaggaggcccttcagctcctcacctctctccgggacctccaatttttggcatgcaggaagttgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcgtcagctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcggatactgcaacaacgagaagctcaaacagcgatttagatctgattattggattgcaagacagatgtggcagaaacacatctttggaaaccaacaatgtggcagttacgtgcttgaagaccataattttccgctgcagcgttgtacaggagtctttggaacacccagattctttgctggtttggatcccatactcggggggctgcaggacggacaagagcagcagctttctcctcttcagtgttcctccaagctgcaggagcttcatacggatgacttcgcaggtgtccacgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggatggaacgacgaggtggagcgtttcacgaaggagcaagaggaggcacttcagcttctcatctccctccaggacctccatttttggggatgcactaatctgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcatcggctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcagagctagctggaacgagaagttcaaacagcggtgcaggaagctaaagggaaccatcccagaaatcatactagactaa More
Protein seq	MAESVAIRGAQWVVSKALSPLSDGLVEAWAASSALGPNIEALKTELLYAQAMLDNARGREIRSHALVELLQKLRRLAYNAEDVLDELDYFRIQDELEGTFETVDRGCFHDLVRDARHTTKAAAKQLECTSCFSSSSMPEHGGARRRVLCGAWLCCGADEKQSCKCACQLVNRASSTVRAVESLSDYKWQVPVEYLSISSYHGSGKALSQVLSHLPKLSELTLRDCNKITRMCIAVEQQQTTAVELEDTQAVESIQQQQVAEDLVEEEGVVPQLAMDQEDDDGMLIFPAHLSNSLQRLDLSSCPELILDVARPVLPTSHEEGTGGWGLQSLHSLQILYIWHCPKFLSTYNAPGCPFPSSLQCLNIDGCMEGVQTLDFISNLNFLTELHIEDCGEDLRCEGLWPLLTQGQLSELIRVYGTPRFFAGLDPILGGLQDGQEQQLPPPLQCSSKLQELRTDDFAGVLVKPICRLLSSSLTKLVLGFNGEVERFMKEQEEALQLLTSLRDLQFLACRKLQCLPAGLHRLTSLKRLEIVSCPSIRSLPKGGLPSSLQELDVGYCNNEKLKQRFRSDYWIARQMWQKHIFGNQQCGSYVLEDHNFPLQRCTGVFGTPRFFAGLDPILGGLQDGQEQQLSPLQCSSKLQELHTDDFAGVHVKPICRLLSSSLTKLVLGWNDEVERFTKEQEEALQLLISLQDLHFWGCTNLQCLPAGLHRLTSLKRLEIIGCPSIRSLPKGGLPSSLQELDVRASWNEKFKQRCRKLKGTIPEIILD More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_04g0027460	OsLiXu_04g0027460.02	Chr04	34168271	34180798	+	NAM
CDS seq	atggcagagtcagtggccatccgcggtgcacagtgggttgtgagcaaggcgctgagcccgctgtccgatggcttggtagaggcgtgggcggccagctcggcgctcggccccaacatcgaagctctcaagacagagcttctctacgcacaggccatgctcgacaatgcccgtggcagggagatccgaagccatgctctggtggagttgctgcagaagctacggcggctagcgtacaacgccgaggacgtgctggacgagctggactacttccgcatccaggacgagctcgaaggcaccttcgagaccgtcgaccgtgggtgcttccacgacctcgtccgtgatgcacgccacacaaccaaggctgctgccaagcagctcgagtgcacctcctgcttctcttcttcgtccatgccagaacatggtggcgcaagaaggcgggtgctgtgtggcgcttggctgtgctgcggcgccgatgagaaacaatcctgcaagtgcgcgtgccagctcgtcaaccgtgctagcagcactgtccgcgctgtcgaaagtttgagtgactataagtggcaagttccagttgagtacctatctatttctagctaccatggaagtgggaaagcattgtcacaggttctctctcatctcccaaagctctcagagttgactcttcgggactgcaacaagattacacggatgtgtatagctgtagaacagcagcaaacaactgctgttgagctggaggatacacaagcagtcgaatctattcagcagcagcaagtagcagaggatctggtggaggaagagggagtggtaccccagctagccatggatcaagaagatgacgatgggatgctgatcttcccagcacacctctccaactctctacagcgactagatctctccagttgcccggagcttatcctagatgttgctcgtcctgttcttcccaccagccacgaggaagggacaggaggatgggggctccaatccctgcactccctccagatactatatatatggcattgccccaagtttctctccacctacaatgccccaggctgccctttcccgtcctccctgcaatgcctcaacattgatggctgtatggagggcgtgcagaccctggatttcatctcaaacctcaacttcctcacagaactacacatcgaagattgtggggaggatttgagatgcgagggtctgtggcctctcctcacccagggtcagctcagcgaattaataagagtctatggaacacccagattctttgctggtttggatcccatactcGgggggctgcaggacggacaagagcagcagcttcctcctcctcttcagtgttcctccaagctgcaggagctcaggacggatgactttgcaggtgtcctcgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggattcaacggcgaggtggagcgcttcatgaaggagcaagaggaggcccttcagctcctcacctctctccgggacctccaatttttggcatgcaggaagttgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcgtcagctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcggatactgcaacaacgagaagctcaaacagcgatttagatctgattattggattgcaagacagatgtggcagaaacacatctttggaaaccaacaatgtggcagttacgtgcttgaaggtataactcccatagtctcatctcgaatgggccttcacaagaataaccatcttatcatgtcagtgtatcatggagtcccttcagatttcagtctattattatgctcaataggttcttatggaaggtacttttaccataattttccgctgcagcgttgtacaggagtctttggaacacccagattctttgctggtttggatcccatactcggggggctgcaggacggacaagagcagcagctttctcctcttcagtgttcctccaagctgcaggagcttcatacggatgacttcgcaggtgtccacgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggatggaacgacgaggtggagcgtttcacgaaggagcaagaggaggcacttcagcttctcatctccctccaggacctccatttttggggatgcactaatctgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcatcggctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcagagctagctggaacgagaagttcaaacagcggtgcaggaagctaaagggaaccatcccagaaatcatactagactaa More
Protein seq	MAESVAIRGAQWVVSKALSPLSDGLVEAWAASSALGPNIEALKTELLYAQAMLDNARGREIRSHALVELLQKLRRLAYNAEDVLDELDYFRIQDELEGTFETVDRGCFHDLVRDARHTTKAAAKQLECTSCFSSSSMPEHGGARRRVLCGAWLCCGADEKQSCKCACQLVNRASSTVRAVESLSDYKWQVPVEYLSISSYHGSGKALSQVLSHLPKLSELTLRDCNKITRMCIAVEQQQTTAVELEDTQAVESIQQQQVAEDLVEEEGVVPQLAMDQEDDDGMLIFPAHLSNSLQRLDLSSCPELILDVARPVLPTSHEEGTGGWGLQSLHSLQILYIWHCPKFLSTYNAPGCPFPSSLQCLNIDGCMEGVQTLDFISNLNFLTELHIEDCGEDLRCEGLWPLLTQGQLSELIRVYGTPRFFAGLDPILGGLQDGQEQQLPPPLQCSSKLQELRTDDFAGVLVKPICRLLSSSLTKLVLGFNGEVERFMKEQEEALQLLTSLRDLQFLACRKLQCLPAGLHRLTSLKRLEIVSCPSIRSLPKGGLPSSLQELDVGYCNNEKLKQRFRSDYWIARQMWQKHIFGNQQCGSYVLEGITPIVSSRMGLHKNNHLIMSVYHGVPSDFSLLLCSIGSYGRYFYHNFPLQRCTGVFGTPRFFAGLDPILGGLQDGQEQQLSPLQCSSKLQELHTDDFAGVHVKPICRLLSSSLTKLVLGWNDEVERFTKEQEEALQLLISLQDLHFWGCTNLQCLPAGLHRLTSLKRLEIIGCPSIRSLPKGGLPSSLQELDVRASWNEKFKQRCRKLKGTIPEIILD More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_04g0027460	OsLiXu_04g0027460.04	Chr04	34176647	34180467	+	NAM
CDS seq	atggagtcccttcagactctggctagtattatgctcaacatattcagaactacgattattggattgctagatagtgcggcagcggcacagctttggaaaccaacagtgtggcaaactggcagttacatgcttgaaggttttagttcccatactctcagtgttctcaaatgtgaaccaaagcgccttagattagactgtttgcactctattaccgggaattgttgcagcgaacttccaaacagatttttgaaatgtccatctcttccgaatatttacatcctgcccaactacatggaatcctcatatgagctgacaaaagggaacaaaaggcttagttcaatgaacataaatgactggaattattgcaatgaacgtccaaacagtctagctccttccctttatatgcggataaatggcaattgggcaattgatctccacccggtgatctccacccaagctcaacttgaattagatatgcttatgacgactttacaatcccagcagatacatcctgaaagaccagataacagaagctgtacactgagcccggttggatttacgacaacagcatactatgagctaataacatatcatggcatcctatggcgcccggcacacttcatctggattaaagcaataccaaacacctgcaaaatcttcctttggctagcctttcggggaaggctaaacacaaatgataacagggtgaagaaatgctgggcatctgatccacattgtgcggtttgcccggctatagaaacagctaatcacatcattctacgctgcaagttagccactgaaatctggaacaaactcaacctccttgatcaggcaattcagagtgctgacattctacagttcaccgagcatgtcctgggaattctaccgactcaacttaaactgggatggccaatatgcttcgctgcctgttcacacagcttatga More
Protein seq	MESLQTLASIMLNIFRTTIIGLLDSAAAAQLWKPTVWQTGSYMLEGFSSHTLSVLKCEPKRLRLDCLHSITGNCCSELPNRFLKCPSLPNIYILPNYMESSYELTKGNKRLSSMNINDWNYCNERPNSLAPSLYMRINGNWAIDLHPVISTQAQLELDMLMTTLQSQQIHPERPDNRSCTLSPVGFTTTAYYELITYHGILWRPAHFIWIKAIPNTCKIFLWLAFRGRLNTNDNRVKKCWASDPHCAVCPAIETANHIILRCKLATEIWNKLNLLDQAIQSADILQFTEHVLGILPTQLKLGWPICFAACSHSL More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_04g0027460	OsLiXu_04g0027460.01	Chr04	34168271	34180798	+	NAM
CDS seq	atggcagagtcagtggccatccgcggtgcacagtgggttgtgagcaaggcgctgagcccgctgtccgatggcttggtagaggcgtgggcggccagctcggcgctcggccccaacatcgaagctctcaagacagagcttctctacgcacaggccatgctcgacaatgcccgtggcagggagatccgaagccatgctctggtggagttgctgcagaagctacggcggctagcgtacaacgccgaggacgtgctggacgagctggactacttccgcatccaggacgagctcgaaggcaccttcgagaccgtcgaccgtgggtgcttccacgacctcgtccgtgatgcacgccacacaaccaaggctgctgccaagcagctcgagtgcacctcctgcttctcttcttcgtccatgccagaacatggtggcgcaagaaggcgggtgctgtgtggcgcttggctgtgctgcggcgccgatgagaaacaatcctgcaagtgcgcgtgccagctcgtcaaccgtgctagcagcactgtccgcgctgtcgaaagtttgagtgactataagtggcaagttccagttgagtacctatctatttctagctaccatggaagtgggaaagcattgtcacaggttctctctcatctcccaaagctctcagagttgactcttcgggactgcaacaagattacacggatgtgtatagctgtagaacagcagcaaacaactgctgttgagctggaggatacacaagcagtcgaatctattcagcagcagcaagtagcagaggatctggtggaggaagagggagtggtaccccagctagccatggatcaagaagatgacgatgggatgctgatcttcccagcacacctctccaactctctacagcgactagatctctccagttgcccggagcttatcctagatgttgctcgtcctgttcttcccaccagccacgaggaagggacaggaggatgggggctccaatccctgcactccctccagatactatatatatggcattgccccaagtttctctccacctacaatgccccaggctgccctttcccgtcctccctgcaatgcctcaacattgatggctgtatggagggcgtgcagaccctggatttcatctcaaacctcaacttcctcacagaactacacatcgaagattgtggggaggatttgagatgcgagggtctgtggcctctcctcacccagggtcagctcagcgaattaataagagtctatggaacacccagattctttgctggtttggatcccatactcGgggggctgcaggacggacaagagcagcagcttcctcctcctcttcagtgttcctccaagctgcaggagctcaggacggatgactttgcaggtgtcctcgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggattcaacggcgaggtggagcgcttcatgaaggagcaagaggaggcccttcagctcctcacctctctccgggacctccaatttttggcatgcaggaagttgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcgtcagctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcggatactgcaacaacgagaagctcaaacagcgatttagatctgattattggattgcaagacagatgtggcagaaacacatctttggaaaccaacaatgtggcagttacgtgcttgaagaccataattttccgctgcagcgttgtacaggagtctttggaacacccagattctttgctggtttggatcccatactcggggggctgcaggacggacaagagcagcagctttctcctcttcagtgttcctccaagctgcaggagcttcatacggatgacttcgcaggtgtccacgtgaagcccatctgcagactcctctcttcctccctcaccaagctagtccttggatggaacgacgaggtggagcgtttcacgaaggagcaagaggaggcacttcagcttctcatctccctccaggacctccatttttggggatgcactaatctgcagtgcctccctgcggggctacatagacttaccagcctcaagagattagagatcatcggctgtccatccatccggtcgctgcccaagggtggcctccccagttcactgcaagaactagatgtcagagctagctggaacgagaagttcaaacagcggtgcaggaagctaaagggaaccatcccagaaatcatactagactaa More
Protein seq	MAESVAIRGAQWVVSKALSPLSDGLVEAWAASSALGPNIEALKTELLYAQAMLDNARGREIRSHALVELLQKLRRLAYNAEDVLDELDYFRIQDELEGTFETVDRGCFHDLVRDARHTTKAAAKQLECTSCFSSSSMPEHGGARRRVLCGAWLCCGADEKQSCKCACQLVNRASSTVRAVESLSDYKWQVPVEYLSISSYHGSGKALSQVLSHLPKLSELTLRDCNKITRMCIAVEQQQTTAVELEDTQAVESIQQQQVAEDLVEEEGVVPQLAMDQEDDDGMLIFPAHLSNSLQRLDLSSCPELILDVARPVLPTSHEEGTGGWGLQSLHSLQILYIWHCPKFLSTYNAPGCPFPSSLQCLNIDGCMEGVQTLDFISNLNFLTELHIEDCGEDLRCEGLWPLLTQGQLSELIRVYGTPRFFAGLDPILGGLQDGQEQQLPPPLQCSSKLQELRTDDFAGVLVKPICRLLSSSLTKLVLGFNGEVERFMKEQEEALQLLTSLRDLQFLACRKLQCLPAGLHRLTSLKRLEIVSCPSIRSLPKGGLPSSLQELDVGYCNNEKLKQRFRSDYWIARQMWQKHIFGNQQCGSYVLEDHNFPLQRCTGVFGTPRFFAGLDPILGGLQDGQEQQLSPLQCSSKLQELHTDDFAGVHVKPICRLLSSSLTKLVLGWNDEVERFTKEQEEALQLLISLQDLHFWGCTNLQCLPAGLHRLTSLKRLEIIGCPSIRSLPKGGLPSSLQELDVRASWNEKFKQRCRKLKGTIPEIILD More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_04g0027460	OsLiXu_04g0027460.05	Chr04	34180202	34180836	+	IsoSeq
CDS seq	atgttgtttttctgtttgtttgtggttctctctaatccctttcttccttcttttctacctcttctttttcttgcctttctgcttgaatgtatttttgttatatctttttttaccaccattaatacaatggttata
Protein seq	MLFFCLFVVLSNPFLPSFLPLLFLAFLLECIFVISFFTTINTMVI

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
A3	Chr04	34177603	34177757	+	OsLiXu_04g0027460.03	OsLiXu_04g0027460.02,OsLiXu_04g0027460.03,OsLiXu_04g0027460.01	All
A3	Chr04	34179775	34179928	+	OsLiXu_04g0027460.01,OsLiXu_04g0027460.02	OsLiXu_04g0027460.02,OsLiXu_04g0027460.04,OsLiXu_04g0027460.01	All
RI	Chr04	34176779	34177426	+	OsLiXu_04g0027460.03	OsLiXu_04g0027460.02,OsLiXu_04g0027460.03,OsLiXu_04g0027460.01	All
A5	Chr04	34176667	34176779	+	OsLiXu_04g0027460.04	OsLiXu_04g0027460.02,OsLiXu_04g0027460.03,OsLiXu_04g0027460.01,OsLiXu_04g0027460.04	All

Expression

	Leaf	Root	Panicle
FPKM	1.428781	3.802756	1.482755

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_04g0626500	RBH	1.449855	1.839052	2.533673
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os04g53496	SBH	0.332108	0.119212	0.141505
Nipponbare \| IRGSP 1.0 \| RAP-db	Os04g0626500	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_04g0027430	RBH	0.000000	2.896392	3.144222
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_04g0028110	RBH	0.000000	0.000000	0.769872
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_04g0027930	RBH	0.544536	1.443015	6.525374
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_04g0027670	RBH	0.015382	0.066013	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_04g0027950	RBH	1.853218	19.699261	5.510958
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_04G0503000	SBH	1.1102425	2.785596	3.067995
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_04g0026620	SBH	0.066260	0.133214	0.369819
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_04G0507000	SBH	0.2745435	0.2969485	0.9896195
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_04g0027030	RBH	0.000000	0.258998	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_04g0026890	SBH	0.093515	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_04g0026930	RBH	0.0	7.217812	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_04g0027380	RBH	0.054452	0.199891	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_04g0027550	SBH	0.406676	3.068031	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_04G026840	RBH	0.173872	1.972238	1.368266
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0026690	RBH	0.0	1.515105	0.351088

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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