Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0024020 | OGI:11078210 | 7/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:29574869-29578894 | ||||||||
| Gene Symbol | YR2, YR6, YR9, YR10, YR21, YR23, DRP-RP13, OsDRP-RP13 | ||||||||||
| DNA seq | ATGGCAACGATAGTAGATACTTTGGTTGGATCATGCATCAATAAGTTGCAAGCGATCATTACAGACAAGGCAATACTCATTTTAGGTGTGAAAGATGAGCTTGAAGAACTGCAGCGAAGAACAGATCTTATTAGATCTTCTTTTAATGACGCTGAGGCAAGGAGGATAGAAGAATCAGCAGTTGAAAAATGGATTGGCCAGATAAGAGATGTTATGTATGATGTTGACGATATTATTGATTTGGCTAGATTTAAAGGAAGTGTCCTACTACCTGACTATCCTACGTCATCATCAAGGAAGTCAACTGCTTGCAGTGGCCATTCACTTAAATCTTGCTTTTCTAATATTCGTATACGTCATAAAGTTGCTGTAAAAATTAGAAGCCTCAACAAAAAGATACTCCCTCCGTATTTTAATGTATAACGCCGTTGACTTTTTAACCAACGTTTGACCATTCGTCTTATTCAATTTTTTTATGCAAATATAAAATTACTTATGTCATGCTTAAAGAATATTTAATGATAAATGAAGTCACAATAAAATAAATGATAATTATATAAAATTTTTTGAATAAGACGAAAGGTCAAATGTTTATAAAAAGTCAACGACATCATACATTAAAATATGGAGGGAGTAGATAACTTTTAAAAGGATGACATATTTTTAAAACTCAACCGCAATGGAAATGGTTCAGCAAGGACCCCGATAGAAAGCTCCGCCCTAATTCAACCCGACCTCGTGGGCAAGGAGGCCATATATGCTTGTAGAGAAGTGGTGGATTTGGTGCTTGCGCACAAGGAAAACAAAGATTTTAAGATTGCTATTGTTGGAACAGGAGGTGTTGGTAAGACAACACTAGCTCAGAAAATATTCAATGATAAAAAATTAGAAAGAAGATTCGACAAGCATGCATGGGTTTGTGTTTCCAAGGAGTATTCTAGGGATTCTCTTTTGAGACAAGTTCTTCGTAATATGGGGATACCACATGACAAAGATGAATTAGTTGGAGAGCTCCAAAGCAATCTTGCATCAAACATTCAAGGCAAGAGTTTTTTTCTTGTGTTGGATGATGTGTGGCACTCTGAAGCATGGGAAGATCTACTAAGAACTCCTCTGCATGCTGCAGCCACAGGAGTGGTTCTAGTAACTACTCGAGACGACACTATTGCTCGAGTAATAGGGGTGGACCACACTCATAGAGTTAATTTGATGTCAGCTGATGTAGGATGGGAGTTGCTTTGGAGGAGCATGAACATCAAAGAAGAGAAACATGTGCAAAATCTAAAGGACATAGGTATTGAGATTGTTTGCAAATGTGGTGGCCTTCCTCTTGGTATTAGGGTTGTTGCAAAAGTTTTAGCAACCCATGATCAAACAGAGAATGAATGGAGAAAGATGTTGGAGAATAGTGCCTGGTCCATGAGCAAATTTCCTCATGAATTAAGAGGTGCTTTATATCTAAGTTATGATGCACTACCCCACCATCTGAAGCAATGTTTTCTTTATTGTGCACTATATCCCGAAGATGTAATCCTACACCGTGATTATCTTATATGGGGGTGGGTAGCGGAAGGATTTATTGAGAAACAAGAAGGCCAACTACTAGAAGACACAGTGGAGAAATATTATTATGAGCTAATCAATCGGAATCTCCTCCAACCAGATGGCTCTTATATTGACCACATAACATGCAAGATGCATGATCTCTTAAGACAACTTGCTTGTTATTTGTCAAGAGAAGAATGTTATGTTGGAGATCCAGAGTCACTGGGGAGTAATAGTATGTGCAAAGTACGACGTATTTCAGTTGTGACTGAGAAGGACATGGTGGTGTTACCTAGCATGGACAAGGATCAATATAAAGTGAGGAGTTTTACATACTTATTATATGGGACATCACAAAGAATTGATAATTCACTTTTCAAGAGACTTGTATGTCTTCGAATTTTGGATTTGTCTGACTCACTTCTACATAACATCCCAGGTGAGATTGGACATTTAATTCATCTGCGCTTACTCGATCTTAACAGGACAGACATATCTTCTCTCCCGGAGTCCATTGGCTCCCTTCAAAACCTTCAAATATTGAACTTGCTGGATTGCGAATCTTTGCACAGCCTTCCTTTGGCAACTACTCAGTTGCGCAATTTAAGACGGCTTGGTCTTGGTGGTGCACCAATAAATAACGTCCCAAAAGGGCTAGGAAGACTGAAATTCCTCAATGATCTAGTAGGACTTCCTGTCAGCCATGGAAGCGGCAATACTAAAATGCAAGATGGATGGAATTTGAAAGAGTTGGCTCATCTTTCGCAGTTGCGTCGGCTTCTCTTGATAAATTTGGAAAAAGCAACTCCCAGCAGTAGTACAGATTCACTGTTACTAATAGACAAAGTGCATCTGAAATATCTATATCTATGCTGCACTGTACCAGCAGATGAAGAATATTCAGAGGAAGATGTTAGCAATGTTGAGAAGATCTTTGACCAACTAGAACCTCCCCACGATGTGCAAGAAGTAAATATTATTGAATACTTTGGGCGGCGGTTGCCCATCTGGATTGGTACTACCCATTTTCATTCACTGGACGGTTTGATTCTTGTAGGTTGCAAGTCCTGTGACCATCTTCCACCAATTGGGCGGATCCCCAACTTGAAATACCTAAGAATTGAGGGAGCAACCTCAATTACCAAGATTGGACCAGAATTTGTTGGCTACGGGGAGAGCAATCTCCGATCAAGAGATGAAGTTGCTTTCCCGAAGCTCGAATTGTTGATCATCAATGATATGCCCAACTAGGAGGAGTGGGTCTTTATTGAAGAAGAGTTCGAGGAGGAAGAGGAAGCAGCTGAGGAAGGGGAAGAGGATGGAGCTGCTTCGAAGCAAAAAGGGAAAGAAGCACTGTCTCCAAGGTCGTCATGGCTGCTGCCTTGTCTGAAGAAGTTTGATATTGTGAACTGCCCCAAGCTGAGGGCTCTCCCACCACAGCTTGGACAACAGGCAACCAGTTTGAAGCAACTCATTATAGAATATGCAGGGTGCTTGAAGATGGTGGAGGATCTCTGGTTCCTCTCTGATGCCCTTCAGATTCAGGCTTGTGAAGGCCTGGAGAGGGTCTCCAACATTCCCTGTGTGAGAAAGTTGTATGTAAATTTTTGCCCAAATCTGAGGTGCGTTGAAGAGTTGGGCAGTTTGGAGCAGCTATGGCTGGATGAAGATATGCAGGAGATCTCGTTGCTATGGGTCCCTGGACATCAAGAGCAACACCGCCAACACCATGAAGATGAGCTAGAGGTCATTGAGTGGTTTGCTAGCCCTATTGAGTGACACAAGGTATGTACACTGATCGGTTGGGATCTTCCACACAAATCTGATGCTTCAGTGGGTTGTACATTCATACCCCTGCTCTGCTCTTCAATTATGTGCAGTTATTCTAGCATTTGATGGCCTCCATATTTGCTTAGATTGGGCATTTCTTGTGCTTTGACATGTATGCTGAACACCAACAGATTAGGTGGCCATACCCCTTATCCTCACATGGTTTTACCAACATCCTGCATGGCAATATGCTAAATTAGTGTATCCTACATATTTGGGCCCAACATCTGCCCTATGCTAGGACACCTAGGTTAGCTTGGCAAACAAAGTCCACCTAAATCCCATTGCATTAGTACAGATTGATGACTATTTTAGTTTATATCCCCTCTTGTCCAAACAAGTGGGGAATATTGTCGACATCTACTTAGGTCTAGCTTATCTGCATCTTCTTGTTAGACTTTTTCCTTTAATTCCAATGTATGTCTGACAAATTTAATTAGAAAAAGATATGATCATTATGAAACTGATGACTCTTATCCTTGCTTTTCCTTGATTAAGTTCCTATATTATAAAATCATCACTTACAATAGACCCGTGCTAAATTTTTGTGTGCTTGTTTATTTTGTAGGTTGTTAATCATGAAGACTTGGGCAACTGAAATGCCTTATCCATTTATCATCATCTTTTATACTTGTTTAATGATGAGAAAAA
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| CDS seq | ATGGCAACGATAGTAGATACTTTGGTTGGATCATGCATCAATAAGTTGCAAGCGATCATTACAGACAAGGCAATACTCATTTTAGGTGTGAAAGATGAGCTTGAAGAACTGCAGCGAAGAACAGATCTTATTAGATCTTCTTTTAATGACGCTGAGGCAAGGAGGATAGAAGAATCAGCAGTTGAAAAATGGATTGGCCAGATAAGAGATGTTATGTATGATGTTGACGATATTATTGATTTGGCTAGATTTAAAGGAAGAGGTGTTGGTAAGACAACACTAGCTCAGAAAATATTCAATGATAAAAAATTAGAAAGAAGATTCGACAAGCATGCATGGGTTTGTGTTTCCAAGGAGTATTCTAGGGATTCTCTTTTGAGACAAGTTCTTCGTAATATGGGGATACCACATGACAAAGATGAATTAGTTGGAGAGCTCCAAAGCAATCTTGCATCAAACATTCAAGGCAAGAGTTTTTTTCTTGTGTTGGATGATGTGTGGCACTCTGAAGCATGGGAAGATCTACTAAGAACTCCTCTGCATGCTGCAGCCACAGGAGTGGTTCTAGTAACTACTCGAGACGACACTATTGCTCGAGTAATAGGGGTGGACCACACTCATAGAGTTAATTTGATGTCAGCTGATGTAGGATGGGAGTTGCTTTGGAGGAGCATGAACATCAAAGAAGAGAAACATGTGCAAAATCTAAAGGACATAGGTATTGAGATTGTTTGCAAATGTGGTGGCCTTCCTCTTGGTATTAGGGTTGTTGCAAAAGTTTTAGCAACCCATGATCAAACAGAGAATGAATGGAGAAAGATGTTGGAGAATAGTGCCTGGTCCATGAGCAAATTTCCTCATGAATTAAGAGGTGCTTTATATCTAAGTTATGATGCACTACCCCACCATCTGAAGCAATGTTTTCTTTATTGTGCACTATATCCCGAAGATGTAATCCTACACCGTGATTATCTTATATGGGGGTGGGTAGCGGAAGGATTTATTGAGAAACAAGAAGGCCAACTACTAGAAGACACAGTGGAGAAATATTATTATGAGCTAATCAATCGGAATCTCCTCCAACCAGATGGCTCTTATATTGACCACATAACATGCAAGATGCATGATCTCTTAAGACAACTTGCTTGTTATTTGTCAAGAGAAGAATGTTATGTTGGAGATCCAGAGTCACTGGGGAGTAATAGTATGTGCAAAGTACGACGTATTTCAGTTGTGACTGAGAAGGACATGGTGTTGCGCAATTTAAGACGGCTTGGTCTTGGTGGTGCACCAATAAATAACGTCCCAAAAGGGCTAGGAAGACTGAAATTCCTCAATGATCTAGTAGGACTTCCTGTCAGCCATGGAAGCGGCAATACTAAAATGCAAGATGGATGGAATTTGAAAGAGTTGGCTCATCTTTCGCAGTTGCGTCGGCTTCTCTTGATAAATTTGGAAAAAGCAACTCCCAGCAGTAGTACAGATTCACTGTTACTAATAGACAAAGTGCATCTGAAATATCTATATCTATGCTGCACTGTACCAGCAGATGAAGAATATTCAGAGGAAGATGTTAGCAATGTTGAGAAGATCTTTGACCAACTAGAACCTCCCCACGATGTGCAAGAAGTAAATATTATTGAATACTTTGGGCGGCGGTTGCCCATCTGGATTGGTACTACCCATTTTCATTCACTGGACGGTTTGATTCTTGTAGGTTGCAAGTCCTGTGACCATCTTCCACCAATTGGGCGGATCCCCAACTTGAAATACCTAAGAATTGAGGGAGCAACCTCAATTACCAAGATTGGACCAGAATTTGTTGGCTACGGGGAGAGCAATCTCCGATCAAGAGATGAAGTTGCTTTCCCGAAGCTCGAATTGTTGATCATCAATGATATGCCCAACTAG
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| Protein seq | MATIVDTLVGSCINKLQAIITDKAILILGVKDELEELQRRTDLIRSSFNDAEARRIEESAVEKWIGQIRDVMYDVDDIIDLARFKGRGVGKTTLAQKIFNDKKLERRFDKHAWVCVSKEYSRDSLLRQVLRNMGIPHDKDELVGELQSNLASNIQGKSFFLVLDDVWHSEAWEDLLRTPLHAAATGVVLVTTRDDTIARVIGVDHTHRVNLMSADVGWELLWRSMNIKEEKHVQNLKDIGIEIVCKCGGLPLGIRVVAKVLATHDQTENEWRKMLENSAWSMSKFPHELRGALYLSYDALPHHLKQCFLYCALYPEDVILHRDYLIWGWVAEGFIEKQEGQLLEDTVEKYYYELINRNLLQPDGSYIDHITCKMHDLLRQLACYLSREECYVGDPESLGSNSMCKVRRISVVTEKDMVLRNLRRLGLGGAPINNVPKGLGRLKFLNDLVGLPVSHGSGNTKMQDGWNLKELAHLSQLRRLLLINLEKATPSSSTDSLLLIDKVHLKYLYLCCTVPADEEYSEEDVSNVEKIFDQLEPPHDVQEVNIIEYFGRRLPIWIGTTHFHSLDGLILVGCKSCDHLPPIGRIPNLKYLRIEGATSITKIGPEFVGYGESNLRSRDEVAFPKLELLIINDMPN |
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| Function | Disease resistance RPP13-like protein 4 [UniProtKB/Swiss-Prot:Q38834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0024020 | OsIR64_11g0024020.01 | Chr11 | 29574869 | 29578894 | + | NAM | ||
| CDS seq | ATGGCAACGATAGTAGATACTTTGGTTGGATCATGCATCAATAAGTTGCAAGCGATCATTACAGACAAGGCAATACTCATTTTAGGTGTGAAAGATGAGCTTGAAGAACTGCAGCGAAGAACAGATCTTATTAGATCTTCTTTTAATGACGCTGAGGCAAGGAGGATAGAAGAATCAGCAGTTGAAAAATGGATTGGCCAGATAAGAGATGTTATGTATGATGTTGACGATATTATTGATTTGGCTAGATTTAAAGGAAGAGGTGTTGGTAAGACAACACTAGCTCAGAAAATATTCAATGATAAAAAATTAGAAAGAAGATTCGACAAGCATGCATGGGTTTGTGTTTCCAAGGAGTATTCTAGGGATTCTCTTTTGAGACAAGTTCTTCGTAATATGGGGATACCACATGACAAAGATGAATTAGTTGGAGAGCTCCAAAGCAATCTTGCATCAAACATTCAAGGCAAGAGTTTTTTTCTTGTGTTGGATGATGTGTGGCACTCTGAAGCATGGGAAGATCTACTAAGAACTCCTCTGCATGCTGCAGCCACAGGAGTGGTTCTAGTAACTACTCGAGACGACACTATTGCTCGAGTAATAGGGGTGGACCACACTCATAGAGTTAATTTGATGTCAGCTGATGTAGGATGGGAGTTGCTTTGGAGGAGCATGAACATCAAAGAAGAGAAACATGTGCAAAATCTAAAGGACATAGGTATTGAGATTGTTTGCAAATGTGGTGGCCTTCCTCTTGGTATTAGGGTTGTTGCAAAAGTTTTAGCAACCCATGATCAAACAGAGAATGAATGGAGAAAGATGTTGGAGAATAGTGCCTGGTCCATGAGCAAATTTCCTCATGAATTAAGAGGTGCTTTATATCTAAGTTATGATGCACTACCCCACCATCTGAAGCAATGTTTTCTTTATTGTGCACTATATCCCGAAGATGTAATCCTACACCGTGATTATCTTATATGGGGGTGGGTAGCGGAAGGATTTATTGAGAAACAAGAAGGCCAACTACTAGAAGACACAGTGGAGAAATATTATTATGAGCTAATCAATCGGAATCTCCTCCAACCAGATGGCTCTTATATTGACCACATAACATGCAAGATGCATGATCTCTTAAGACAACTTGCTTGTTATTTGTCAAGAGAAGAATGTTATGTTGGAGATCCAGAGTCACTGGGGAGTAATAGTATGTGCAAAGTACGACGTATTTCAGTTGTGACTGAGAAGGACATGGTGTTGCGCAATTTAAGACGGCTTGGTCTTGGTGGTGCACCAATAAATAACGTCCCAAAAGGGCTAGGAAGACTGAAATTCCTCAATGATCTAGTAGGACTTCCTGTCAGCCATGGAAGCGGCAATACTAAAATGCAAGATGGATGGAATTTGAAAGAGTTGGCTCATCTTTCGCAGTTGCGTCGGCTTCTCTTGATAAATTTGGAAAAAGCAACTCCCAGCAGTAGTACAGATTCACTGTTACTAATAGACAAAGTGCATCTGAAATATCTATATCTATGCTGCACTGTACCAGCAGATGAAGAATATTCAGAGGAAGATGTTAGCAATGTTGAGAAGATCTTTGACCAACTAGAACCTCCCCACGATGTGCAAGAAGTAAATATTATTGAATACTTTGGGCGGCGGTTGCCCATCTGGATTGGTACTACCCATTTTCATTCACTGGACGGTTTGATTCTTGTAGGTTGCAAGTCCTGTGACCATCTTCCACCAATTGGGCGGATCCCCAACTTGAAATACCTAAGAATTGAGGGAGCAACCTCAATTACCAAGATTGGACCAGAATTTGTTGGCTACGGGGAGAGCAATCTCCGATCAAGAGATGAAGTTGCTTTCCCGAAGCTCGAATTGTTGATCATCAATGATATGCCCAACTAG
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| Protein seq | MATIVDTLVGSCINKLQAIITDKAILILGVKDELEELQRRTDLIRSSFNDAEARRIEESAVEKWIGQIRDVMYDVDDIIDLARFKGRGVGKTTLAQKIFNDKKLERRFDKHAWVCVSKEYSRDSLLRQVLRNMGIPHDKDELVGELQSNLASNIQGKSFFLVLDDVWHSEAWEDLLRTPLHAAATGVVLVTTRDDTIARVIGVDHTHRVNLMSADVGWELLWRSMNIKEEKHVQNLKDIGIEIVCKCGGLPLGIRVVAKVLATHDQTENEWRKMLENSAWSMSKFPHELRGALYLSYDALPHHLKQCFLYCALYPEDVILHRDYLIWGWVAEGFIEKQEGQLLEDTVEKYYYELINRNLLQPDGSYIDHITCKMHDLLRQLACYLSREECYVGDPESLGSNSMCKVRRISVVTEKDMVLRNLRRLGLGGAPINNVPKGLGRLKFLNDLVGLPVSHGSGNTKMQDGWNLKELAHLSQLRRLLLINLEKATPSSSTDSLLLIDKVHLKYLYLCCTVPADEEYSEEDVSNVEKIFDQLEPPHDVQEVNIIEYFGRRLPIWIGTTHFHSLDGLILVGCKSCDHLPPIGRIPNLKYLRIEGATSITKIGPEFVGYGESNLRSRDEVAFPKLELLIINDMPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.322438 | 0.290468 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0674400 | SBH | 3.157148 | 3.913529 | 6.933932 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44990 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0674400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023540 | RBH | 0.831547 | 9.639051 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023530 | SBH | 0.000000 | 2.995102 | 0.126475 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023450 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022960 | RBH | 0.147622 | 0.020792 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023650 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0410200 | SBH | 0.016715 | 0.3187185 | 0.003874 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024070 | SBH | 0.147908 | 0.045435 | 1.028058 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0430000 | SBH | 0.0419675 | 0.0645025 | 0.058287 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023840 | SBH | 1.203734 | 0.746390 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023820 | SBH | 0.957821 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023350 | RBH | 1.226174 | 6.484962 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023040 | RBH | 0.306741 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023110 | RBH | 3.427288 | 7.983480 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023320 | SBH | 0.129080 | 0.795419 | 0.599774 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023750 | SBH | 0.152510 | 4.768662 | 0.673288 |
