Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0023540 | OGI:11078210 | 7/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:27862189-27864993 | ||||||||
| Gene Symbol | DRP-RP13, OsDRP-RP13 | ||||||||||
| DNA seq | TTTGTTGGATGGCAACGATAGTAGATACTTTGGTTGGATCATGCATCAATAAGTTGCAAGCGATCATTACAGACAAGGCAATACTCATTTTAGGTGTGAAAGATGAGCTTGAAGAACTGCAGCGAAGAACAGATCTTATTAGATCTTCTTTTAACGACGCTGAGGCAAGGAGGATAGAAGAATCAGCAGTTGAAAAATGGATTGGCCAGATAAGAGATGTTATGTATGATGTTGATGATATTATTGATTTGGCTAGATTTAAAGGAAGTGTCCTACTACCTGACTATCCTACGTCATCATCAAGGAAGTCAACTGCTTGCAGTGGCCATTCACTTAAATCTTGCTTTTCTAATATTCGTATACGTCATGAAGTTGCTGTAAAAATTAGAAGCCTCAACAAAAAGATACTCCCTCCGTATTTTAATGTATAACGCCGTTGACTTTTTAACCAACGTTTGACCATTCGTCTTATTCAATTTTTTTATGCAAATATAAAATTACTTATGTCATGCTTAAAGAATATTTAATGATAAATGAAGTCACAATAAAATAAATGATAACTACATAAAATTTTTTGAATAAGACGAAAGGTCAAATGTTTATAAAAAGTCAACGACGTCATACATTAAAATATGGAGGGAGTAGATAACTTTTAAAAGGATGACATATTTTTAAAACTCAACCGCAATGGAAATGGTTCAGCATGGACCCCGATAGAAAGCTCCGCCCTAATTCAACCTGACCTCGTGGGCAAGGAGGCCATATATGCTTGTAGAGAAGTGGTGGATTTGGTGCTTGCGCACAAGGAAAACAAAGATTTTAAGATTGCTATTGTTGGAACAGGAGGTGTTGGTAAGACAACACTAGCTCAGAAAATATTCAATGATAAAAAATTAGAAAGAAGATTCGACAAGCATGCATGGGTTTGTGTTTCCAAGGAGTATTCTAGGGATTCTCTTTTGAGACAAGTTCTTCGTAATATGGGGATACCACATGACAAAGATGAATCAGTTGGAGAGCTCCAAAGCAATCTTGCATCAAACATTCAAGGCAAGAGTTTTTTTTCTTGTGTTGGATGATGTGTGGCACTCTGAAGCATGGGAAGATCTACTAAGAACTCCTCTGCATGCTGCAGCCACAGGAGTGGTTCTAGTAACTACTCGAGACGACACTATTGCTCGAGTAATAGGGGTGGACCACACTCATAGAGTTAATTTGATGTCAGCTGATGTAGGATGGGAGTTGCTTTGGAGGAGCATGAACATCAAAGAAGAGAAACAAGTGCAAAATCTAAAGGACATAGGTATTGAGATTGTTTGCAAATGTGGTGGCCTTCCTCTTGGTATTAGGGTTGTTGCAAAAGTTTTAGCAACCCATGATCAAACAGAGAATGAATGGAGAAAGATGTTGGAGAATAGTGCCTGGTCCATGAGCAAATTTCCTCATGAATTAAGAGGTGCTTTATATCTAAGTTATGATGCACTACCCCACCATCTGAAGCAATGTTTTCTTTATTGTGCACTATATCCCGAAGATGTAATCCTACACCGTGATTATCTTATATGGAGGTGGGTAGCGGAAGGATTTATTGAGAAACAAGAAGGCCAACTACTAGAAGACACAGCGGAGAAATATTATTATGAGCTAATCAATCGGAATCTCCTCCAACCAGATGGCTCTTATATTGACCACATAACATGCAAGATGCATGATCTCTTAAGACAACTTGCTTGTTATTTGTCAAGAGAAAAATGTTATGTTGGAGATCCAGAGTCACTGGGGAGTAATAGTATGTGCAAAGTACGACGTATTTCAGTTGTGACTGAGAAGGACATGGTGGTGTTACCTAGCATGGACAAGGATCAATATAAAGTGAGGAGTTTTACATACTTATTATATGGGACATCACAAAGAATTGATAATTCACTTTTCAAGAGACTTGTATGTCTTCGAATTTTGGATTTGTCTGACTCACTTCTACATAACATCCCAGGTGAGATTGGACATTTAATTCATCTGCGCTTACTCGATCTTAACAGGACAGACATATCTTCTCTCCCGGAGTCCATTGGCTCCCTTCAAAACCTTCAAATATTGAACTTGCTGGACTGCGAATCTTTGCACAGCCTTCCTTTGGCAACTACTCAGTTGTGCAATTTAAGACGGCTTGGTCTTGGTGGTACACCAATAAATAACGTCCCAAAAGGGCTAGGAAGACTGAAATTCCTCAATGATCTAGTAGGATTTCCTGTCAGCCATGGAAGCAGCAATACTAAAATGCAAGATGGATGGAATTTGAAAGAGTTGGCTCATCTTTCGCAGTTGCGTCGGCTTCTCTTGATAAATTTGGAAAAAGCAACTCCCAGCAGTAGTACAGATTCACTGTTACTAATAGACAAAGTGCATCTGAAATATCTATATCTATGCTGCACTGTACCAGCAGATGAAGAATATTCAGAGGAAGATGTTAGCAATGTTGAGAAGATCTTTGACCAACTAGAACCTCCCCACAATGTGCAAGAAGTAAATATTATTGAATACTTTGGGCGGCGACTGCCCATCTGGATTGGTACTACCCATTTTCATTCACTGGACGGTTTGATTCTTGTAGGTTGCAAGTCCTGTGACCATCTTCCACCAATTGGGCGGATCCCCAACTTGAAATACCTAAGAATTGAGGGAGCAACCTCAATTACCAAGATTGGACCAGAATTTGTTGGCTACGGGGAGAGCAATCTCCAATCAAGAGATGAAGTTGCTTTCCCGAAGCTCGAATTGTTGATCATCAATGATATGCCCAACTAG
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| CDS seq | ATGGCAACGATAGTAGATACTTTGGTTGGATCATGCATCAATAAGTTGCAAGCGATCATTACAGACAAGGCAATACTCATTTTAGGTGTGAAAGATGAGCTTGAAGAACTGCAGCGAAGAACAGATCTTATTAGATCTTCTTTTAACGACGCTGAGGCAAGGAGGATAGAAGAATCAGCAGTTGAAAAATGGATTGGCCAGATAAGAGATGTTATGTATGATGTTGATGATATTATTGATTTGGCTAGATTTAAAGGAAGTGTCCTACTACCTGACTATCCTACGTCATCATCAAGGAAAGAAGTGGTGGATTTGGTGCTTGCGCACAAGGAAAACAAAGATTTTAAGATTGCTATTGTTGGAACAGGAGGTGTTGGTAAGACAACACTAGCTCAGAAAATATTCAATGATAAAAAATTAGAAAGAAGATTCGACAAGCATGCATGGGTTTGTGTTTCCAAGGAGTATTCTAGGGATTCTCTTTTGAGACAAGTTCTTCGTAATATGGGGATACCACATGACAAAGATGAATCAGTTGGAGAGCTCCAAAGCAATCTTGCATCAAACATTCAAGGCAAGACATGGGAAGATCTACTAAGAACTCCTCTGCATGCTGCAGCCACAGGAGTGGTTCTAGTAACTACTCGAGACGACACTATTGCTCGAGTAATAGGGGTGGACCACACTCATAGAGTTAATTTGATGTCAGCTGATGTAGGATGGGAGTTGCTTTGGAGGAGCATGAACATCAAAGAAGAGAAACAAGTGCAAAATCTAAAGGACATAGGTATTGAGATTGTTTGCAAATGTGGTGGCCTTCCTCTTGGTATTAGGGTTGTTGCAAAAGTTTTAGCAACCCATGATCAAACAGAGAATGAATGGAGAAAGATGTTGGAGAATAGTGCCTGGTCCATGAGCAAATTTCCTCATGAATTAAGAGGTGCTTTATATCTAAGTTATGATGCACTACCCCACCATCTGAAGCAATGTTTTCTTTATTGTGCACTATATCCCGAAGATGTAATCCTACACCGTGATTATCTTATATGGAGGTGGGTAGCGGAAGGATTTATTGAGAAACAAGAAGGCCAACTACTAGAAGACACAGCGGAGAAATATTATTATGAGCTAATCAATCGGAATCTCCTCCAACCAGATGGCTCTTATATTGACCACATAACATGCAAGATGCATGATCTCTTAAGACAACTTGCTTGTTATTTGTCAAGAGAAAAATGTTATGTTGGAGATCCAGAGTCACTGGGGAGTAATAGTATGTGCAAAGTACGACGTATTTCAGTTGTGACTGAGAAGGACATGGTGGTGTTACCTAGCATGGACAAGGATCAATATAAAGTGAGGAGTTTTACATACTTATTATATGGGACATCACAAAGAATTGATAATTCACTTTTCAAGAGACTTGTATGTCTTCGAATTTTGGATTTGTCTGACTCACTTCTACATAACATCCCAGGTGAGATTGGACATTTAATTCATCTGCGCTTACTCGATCTTAACAGGACAGACATATCTTCTCTCCCGGAGTCCATTGGCTCCCTTCAAAACCTTCAAATATTGAACTTGCTGGACTGCGAATCTTTGCACAGCCTTCCTTTGGCAACTACTCAGTTGTGCAATTTAAGACGGCTTGGTCTTGGTGGTACACCAATAAATAACGTCCCAAAAGGGCTAGGAAGACTGAAATTCCTCAATGATCTAGTAGGATTTCCTGTCAGCCATGGAAGCAGCAATACTAAAATGCAAGATGGATGGAATTTGAAAGAGTTGGCTCATCTTTCGCAGTTGCGTCGGCTTCTCTTGATAAATTTGGAAAAAGCAACTCCCAGCAGTAGTACAGATTCACTGTTACTAATAGACAAAGTGCATCTGAAATATCTATATCTATGCTGCACTGTACCAGCAGATGAAGAATATTCAGAGGAAGATGTTAGCAATGTTGAGAAGATCTTTGACCAACTAGAACCTCCCCACAATGTGCAAGAAGTAAATATTATTGAATACTTTGGGCGGCGACTGCCCATCTGGATTGGTACTACCCATTTTCATTCACTGGACGGTTTGATTCTTGTAGGTTGCAAGTCCTGTGACCATCTTCCACCAATTGGGCGGATCCCCAACTTGAAATACCTAAGAATTGAGGGAGCAACCTCAATTACCAAGATTGGACCAGAATTTGTTGGCTACGGGGAGAGCAATCTCCAATCAAGAGATGAAGTTGCTTTCCCGAAGCTCGAATTGTTGATCATCAATGATATGCCCAACTAG
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| Protein seq | MATIVDTLVGSCINKLQAIITDKAILILGVKDELEELQRRTDLIRSSFNDAEARRIEESAVEKWIGQIRDVMYDVDDIIDLARFKGSVLLPDYPTSSSRKEVVDLVLAHKENKDFKIAIVGTGGVGKTTLAQKIFNDKKLERRFDKHAWVCVSKEYSRDSLLRQVLRNMGIPHDKDESVGELQSNLASNIQGKTWEDLLRTPLHAAATGVVLVTTRDDTIARVIGVDHTHRVNLMSADVGWELLWRSMNIKEEKQVQNLKDIGIEIVCKCGGLPLGIRVVAKVLATHDQTENEWRKMLENSAWSMSKFPHELRGALYLSYDALPHHLKQCFLYCALYPEDVILHRDYLIWRWVAEGFIEKQEGQLLEDTAEKYYYELINRNLLQPDGSYIDHITCKMHDLLRQLACYLSREKCYVGDPESLGSNSMCKVRRISVVTEKDMVVLPSMDKDQYKVRSFTYLLYGTSQRIDNSLFKRLVCLRILDLSDSLLHNIPGEIGHLIHLRLLDLNRTDISSLPESIGSLQNLQILNLLDCESLHSLPLATTQLCNLRRLGLGGTPINNVPKGLGRLKFLNDLVGFPVSHGSSNTKMQDGWNLKELAHLSQLRRLLLINLEKATPSSSTDSLLLIDKVHLKYLYLCCTVPADEEYSEEDVSNVEKIFDQLEPPHNVQEVNIIEYFGRRLPIWIGTTHFHSLDGLILVGCKSCDHLPPIGRIPNLKYLRIEGATSITKIGPEFVGYGESNLQSRDEVAFPKLELLIINDMPN |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0023540 | OsAzu_11g0023540.01 | Chr11 | 27862189 | 27864993 | + | NAM | ||
| CDS seq | ATGGCAACGATAGTAGATACTTTGGTTGGATCATGCATCAATAAGTTGCAAGCGATCATTACAGACAAGGCAATACTCATTTTAGGTGTGAAAGATGAGCTTGAAGAACTGCAGCGAAGAACAGATCTTATTAGATCTTCTTTTAACGACGCTGAGGCAAGGAGGATAGAAGAATCAGCAGTTGAAAAATGGATTGGCCAGATAAGAGATGTTATGTATGATGTTGATGATATTATTGATTTGGCTAGATTTAAAGGAAGTGTCCTACTACCTGACTATCCTACGTCATCATCAAGGAAAGAAGTGGTGGATTTGGTGCTTGCGCACAAGGAAAACAAAGATTTTAAGATTGCTATTGTTGGAACAGGAGGTGTTGGTAAGACAACACTAGCTCAGAAAATATTCAATGATAAAAAATTAGAAAGAAGATTCGACAAGCATGCATGGGTTTGTGTTTCCAAGGAGTATTCTAGGGATTCTCTTTTGAGACAAGTTCTTCGTAATATGGGGATACCACATGACAAAGATGAATCAGTTGGAGAGCTCCAAAGCAATCTTGCATCAAACATTCAAGGCAAGACATGGGAAGATCTACTAAGAACTCCTCTGCATGCTGCAGCCACAGGAGTGGTTCTAGTAACTACTCGAGACGACACTATTGCTCGAGTAATAGGGGTGGACCACACTCATAGAGTTAATTTGATGTCAGCTGATGTAGGATGGGAGTTGCTTTGGAGGAGCATGAACATCAAAGAAGAGAAACAAGTGCAAAATCTAAAGGACATAGGTATTGAGATTGTTTGCAAATGTGGTGGCCTTCCTCTTGGTATTAGGGTTGTTGCAAAAGTTTTAGCAACCCATGATCAAACAGAGAATGAATGGAGAAAGATGTTGGAGAATAGTGCCTGGTCCATGAGCAAATTTCCTCATGAATTAAGAGGTGCTTTATATCTAAGTTATGATGCACTACCCCACCATCTGAAGCAATGTTTTCTTTATTGTGCACTATATCCCGAAGATGTAATCCTACACCGTGATTATCTTATATGGAGGTGGGTAGCGGAAGGATTTATTGAGAAACAAGAAGGCCAACTACTAGAAGACACAGCGGAGAAATATTATTATGAGCTAATCAATCGGAATCTCCTCCAACCAGATGGCTCTTATATTGACCACATAACATGCAAGATGCATGATCTCTTAAGACAACTTGCTTGTTATTTGTCAAGAGAAAAATGTTATGTTGGAGATCCAGAGTCACTGGGGAGTAATAGTATGTGCAAAGTACGACGTATTTCAGTTGTGACTGAGAAGGACATGGTGGTGTTACCTAGCATGGACAAGGATCAATATAAAGTGAGGAGTTTTACATACTTATTATATGGGACATCACAAAGAATTGATAATTCACTTTTCAAGAGACTTGTATGTCTTCGAATTTTGGATTTGTCTGACTCACTTCTACATAACATCCCAGGTGAGATTGGACATTTAATTCATCTGCGCTTACTCGATCTTAACAGGACAGACATATCTTCTCTCCCGGAGTCCATTGGCTCCCTTCAAAACCTTCAAATATTGAACTTGCTGGACTGCGAATCTTTGCACAGCCTTCCTTTGGCAACTACTCAGTTGTGCAATTTAAGACGGCTTGGTCTTGGTGGTACACCAATAAATAACGTCCCAAAAGGGCTAGGAAGACTGAAATTCCTCAATGATCTAGTAGGATTTCCTGTCAGCCATGGAAGCAGCAATACTAAAATGCAAGATGGATGGAATTTGAAAGAGTTGGCTCATCTTTCGCAGTTGCGTCGGCTTCTCTTGATAAATTTGGAAAAAGCAACTCCCAGCAGTAGTACAGATTCACTGTTACTAATAGACAAAGTGCATCTGAAATATCTATATCTATGCTGCACTGTACCAGCAGATGAAGAATATTCAGAGGAAGATGTTAGCAATGTTGAGAAGATCTTTGACCAACTAGAACCTCCCCACAATGTGCAAGAAGTAAATATTATTGAATACTTTGGGCGGCGACTGCCCATCTGGATTGGTACTACCCATTTTCATTCACTGGACGGTTTGATTCTTGTAGGTTGCAAGTCCTGTGACCATCTTCCACCAATTGGGCGGATCCCCAACTTGAAATACCTAAGAATTGAGGGAGCAACCTCAATTACCAAGATTGGACCAGAATTTGTTGGCTACGGGGAGAGCAATCTCCAATCAAGAGATGAAGTTGCTTTCCCGAAGCTCGAATTGTTGATCATCAATGATATGCCCAACTAG
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| Protein seq | MATIVDTLVGSCINKLQAIITDKAILILGVKDELEELQRRTDLIRSSFNDAEARRIEESAVEKWIGQIRDVMYDVDDIIDLARFKGSVLLPDYPTSSSRKEVVDLVLAHKENKDFKIAIVGTGGVGKTTLAQKIFNDKKLERRFDKHAWVCVSKEYSRDSLLRQVLRNMGIPHDKDESVGELQSNLASNIQGKTWEDLLRTPLHAAATGVVLVTTRDDTIARVIGVDHTHRVNLMSADVGWELLWRSMNIKEEKQVQNLKDIGIEIVCKCGGLPLGIRVVAKVLATHDQTENEWRKMLENSAWSMSKFPHELRGALYLSYDALPHHLKQCFLYCALYPEDVILHRDYLIWRWVAEGFIEKQEGQLLEDTAEKYYYELINRNLLQPDGSYIDHITCKMHDLLRQLACYLSREKCYVGDPESLGSNSMCKVRRISVVTEKDMVVLPSMDKDQYKVRSFTYLLYGTSQRIDNSLFKRLVCLRILDLSDSLLHNIPGEIGHLIHLRLLDLNRTDISSLPESIGSLQNLQILNLLDCESLHSLPLATTQLCNLRRLGLGGTPINNVPKGLGRLKFLNDLVGFPVSHGSSNTKMQDGWNLKELAHLSQLRRLLLINLEKATPSSSTDSLLLIDKVHLKYLYLCCTVPADEEYSEEDVSNVEKIFDQLEPPHNVQEVNIIEYFGRRLPIWIGTTHFHSLDGLILVGCKSCDHLPPIGRIPNLKYLRIEGATSITKIGPEFVGYGESNLQSRDEVAFPKLELLIINDMPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.831547 | 9.639051 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676200 | SBH | 0.035527 | 0.072868 | 0.057889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44970 | SBH | 0.0 | 0.000000 | 0.092757 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023570 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022010 | SBH | 0.330990 | 6.824082 | 4.459390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008660 | SBH | 0.578641 | 4.067461 | 2.490123 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022960 | RBH | 0.147622 | 0.020792 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023130 | SBH | 0.0 | 2.865955 | 0.108137 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0416600 | SBH | 0.1248355 | 0.9264055 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024020 | RBH | 0.322438 | 0.290468 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0429700 | SBH | 0.012926 | 1.070222 | 0.2560875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023840 | SBH | 1.203734 | 0.746390 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023820 | SBH | 0.957821 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023350 | RBH | 1.226174 | 6.484962 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023040 | RBH | 0.306741 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023110 | RBH | 3.427288 | 7.983480 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023320 | SBH | 0.129080 | 0.795419 | 0.599774 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023750 | SBH | 0.152510 | 4.768662 | 0.673288 |
