Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0013710 | OGI:04011900 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:20644766-20647174 | ||||||||
| Gene Symbol | SDRLK-27, SDRLK-28 | ||||||||||
| DNA seq | atgcctctcgccctcacccttcttggattattactcttgtcactacacatctctgcatcttgtgctgccatggacaccatgacacctgcgcaagcgctctttggaaacggcaagctcatatccagcaacggcaagttcgcgctcggcttcttccagactggcagtaagtcctctcataacaccctaaattggtacctaggcatatggtacaacaaaatccccaagctaactccagtatgggtggcaaacggtgataacccagtcacagaccccaacaattcagagctcacgatctctggcgatggcgggctcgtcatcttagatcgatccaacagatccatcgtttggtctacccgaataaatatcacaactaacgacacagttgccatgctattgaacagcggaaacctcgtcctacagaatttcttgaattcatccgatgcgctgtggcaaagctttgactacccaacacatactttcctccctggtgcaaaacttggttggagcaagatcagtggtctcaatagccgtctggtttctaggaagaattcaattgacctagctcctggcaaatacagtgttgagttagatccaagtggtgcgaatcaatacatctttacactgttgaactcatccacaccatatttgactagcggggtatggaatggccaatactttccctcaattccagagatggcaggaccctttatagtaaattttacatttgtcgacaatgatcaagagaagtacttcacatatagcttactagatgagacagtggttttccatcatttcttggatgtctcaggtcgaacaaagacatttgtttggcttgagggctcacaagattgggtaatgacctatgcacaacccaaagttcaatgtgatgtatttgctgtttgtggacctttcacaatctgtaacgataatgaacttgggttctgcaagtgcatgaaaggtttctccataaaatcaccaaaggattgggaattagatgatcggacagatgggtgcatgagaaatactccattagactgtgctagcaacaaaaccgcatcaagtttgactgacaagttccattctatgccatgtgttagattgcctcaaaatggctacagcattgaagctgctacaaatgcagataaatgcgccctagtttgcctaagtaattgctcttgcactgcatattcttatggcaatggtggctgcttggtctggcatgctgagttgttcgatgtaaaacagcagcagtgtgatggcataactgatactaatggagggaccctttacattcgccttgcttcaagagaggagcaaagccagaaaaagaacagaagaggattgatcattgcaattgcccttggtctaagcttcgctgctctgtttatgctggcaatcgcactagtgatttggtggaacaaaagtaagaggtataattgcacatcaaacaatgttgaaggtgagagtggaattgttgcgtttagatatattgatctgcagcatgcgactaaaaacttctcagaaaagctgggggaaggtgggtttggttctgtattcaagggatttctccatgactcaagaactatagcagtgaaaaagcttgctggtgcacatcaaggagaaaaacaattcagagcagaagtgagctcgattggactaatccaacatataaatttaataaaactaattggcttctgttgtgacaatgatagtaaactgcttgtttatgaacacatgccaaatcgttcccttgatgttcatctattcccaactgatattaaaattttgaattgggatactaggcatcaaatagctattggagttgctagaggactatcttatttgcatgacagctgccgcgactgcattatacactgtgatgttaaacctcaaaacatacttctcagtgaatcattcactcccaaaattgcagactttggaatggcaaagtttctaggaagagattttagtcgagttttgactacaatgagaggaactataggatatcttgcacctgaatggattagtggagtgcctatcacaccaaaagttgatgtttatagctatgggatggttttgttggaaattgtttcaggaaggaggaattcaaatggaggatgtatcactggtggtgacaaagatgtttatttcccagtgaaagtcgcgcataagcttctggagggagatgtagaaagcttgatagatcccaacttacatggcgacgccaacttaacagaggttgagagagtttgcaaggttgcttgttggtgtattcaagataatgagttcgaccgacctactatgggtgaagtggttcaaattctcgagggaatatttgaacttgacacacctccaatgccaagactactgcaagctattgccggaagctcttgttctattgcagaataa
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| CDS seq | atgcctctcgccctcacccttcttggattattactcttgtcactacacatctctgcatcttgtgctgccatggacaccatgacacctgcgcaagcgctctttggaaacggcaagctcatatccagcaacggcaagttcgcgctcggcttcttccagactggcagtaagtcctctcataacaccctaaattggtacctaggcatatggtacaacaaaatccccaagctaactccagtatgggtggcaaacggtgataacccagtcacagaccccaacaattcagagctcacgatctctggcgatggcgggctcgtcatcttagatcgatccaacagatccatcgtttggtctacccgaataaatatcacaactaacgacacagttgccatgctattgaacagcggaaacctcgtcctacagaatttcttgaattcatccgatgcgctgtggcaaagctttgactacccaacacatactttcctccctggtgcaaaacttggttggagcaagatcagtggtctcaatagccgtctggtttctaggaagaattcaattgacctagctcctggcaaatacagtgttgagttagatccaagtggtgcgaatcaatacatctttacactgttgaactcatccacaccatatttgactagcggggtatggaatggccaatactttccctcaattccagagatggcaggaccctttatagtaaattttacatttgtcgacaatgatcaagagaagtacttcacatatagcttactagatgagacagtggttttccatcatttcttggatgtctcaggtcgaacaaagacatttgtttggcttgagggctcacaagattgggtaatgacctatgcacaacccaaagttcaatgtgatgtatttgctgtttgtggacctttcacaatctgtaacgataatgaacttgggttctgcaagtgcatgaaaggtttctccataaaatcaccaaaggattgggaattagatgatcggacagatgggtgcatgagaaatactccattagactgtgctagcaacaaaaccgcatcaagtttgactgacaagttccattctatgccatgtgttagattgcctcaaaatggctacagcattgaagctgctacaaatgcagataaatgcgccctagtttgcctaagtaattgctcttgcactgcatattcttatggcaatggtggctgcttggtctggcatgctgagttgttcgatgtaaaacagcagcagtgtgatggcataactgatactaatggagggaccctttacattcgccttgcttcaagagaggagcaaagccagaaaaagaacagaagaggattgatcattgcaattgcccttggaaggaggaattcaaatggaggatgtatcactggtggtgacaaagatgtttatttcccagtgaaagtcgcgcataagcttctggagggagatgtagaaagcttgatagatcccaacttacatggcgacgccaacttaacagaggttgagagagtttgcaaggttgcttgttggtgtattcaagataatgagttcgaccgacctactatgggtgaagtggttcaaattctcgagggaatatttgaacttgacacacctccaatgccaagactactgcaagctattgccggaagctcttgttctattgcagaataa
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| Protein seq | MPLALTLLGLLLLSLHISASCAAMDTMTPAQALFGNGKLISSNGKFALGFFQTGSKSSHNTLNWYLGIWYNKIPKLTPVWVANGDNPVTDPNNSELTISGDGGLVILDRSNRSIVWSTRINITTNDTVAMLLNSGNLVLQNFLNSSDALWQSFDYPTHTFLPGAKLGWSKISGLNSRLVSRKNSIDLAPGKYSVELDPSGANQYIFTLLNSSTPYLTSGVWNGQYFPSIPEMAGPFIVNFTFVDNDQEKYFTYSLLDETVVFHHFLDVSGRTKTFVWLEGSQDWVMTYAQPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDRTDGCMRNTPLDCASNKTASSLTDKFHSMPCVRLPQNGYSIEAATNADKCALVCLSNCSCTAYSYGNGGCLVWHAELFDVKQQQCDGITDTNGGTLYIRLASREEQSQKKNRRGLIIAIALGRRNSNGGCITGGDKDVYFPVKVAHKLLEGDVESLIDPNLHGDANLTEVERVCKVACWCIQDNEFDRPTMGEVVQILEGIFELDTPPMPRLLQAIAGSSCSIAE |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0013710 | OsCMeo_04g0013710.01 | Chr04 | 20644766 | 20647174 | + | NAM | ||
| CDS seq | atgcctctcgccctcacccttcttggattattactcttgtcactacacatctctgcatcttgtgctgccatggacaccatgacacctgcgcaagcgctctttggaaacggcaagctcatatccagcaacggcaagttcgcgctcggcttcttccagactggcagtaagtcctctcataacaccctaaattggtacctaggcatatggtacaacaaaatccccaagctaactccagtatgggtggcaaacggtgataacccagtcacagaccccaacaattcagagctcacgatctctggcgatggcgggctcgtcatcttagatcgatccaacagatccatcgtttggtctacccgaataaatatcacaactaacgacacagttgccatgctattgaacagcggaaacctcgtcctacagaatttcttgaattcatccgatgcgctgtggcaaagctttgactacccaacacatactttcctccctggtgcaaaacttggttggagcaagatcagtggtctcaatagccgtctggtttctaggaagaattcaattgacctagctcctggcaaatacagtgttgagttagatccaagtggtgcgaatcaatacatctttacactgttgaactcatccacaccatatttgactagcggggtatggaatggccaatactttccctcaattccagagatggcaggaccctttatagtaaattttacatttgtcgacaatgatcaagagaagtacttcacatatagcttactagatgagacagtggttttccatcatttcttggatgtctcaggtcgaacaaagacatttgtttggcttgagggctcacaagattgggtaatgacctatgcacaacccaaagttcaatgtgatgtatttgctgtttgtggacctttcacaatctgtaacgataatgaacttgggttctgcaagtgcatgaaaggtttctccataaaatcaccaaaggattgggaattagatgatcggacagatgggtgcatgagaaatactccattagactgtgctagcaacaaaaccgcatcaagtttgactgacaagttccattctatgccatgtgttagattgcctcaaaatggctacagcattgaagctgctacaaatgcagataaatgcgccctagtttgcctaagtaattgctcttgcactgcatattcttatggcaatggtggctgcttggtctggcatgctgagttgttcgatgtaaaacagcagcagtgtgatggcataactgatactaatggagggaccctttacattcgccttgcttcaagagaggagcaaagccagaaaaagaacagaagaggattgatcattgcaattgcccttggaaggaggaattcaaatggaggatgtatcactggtggtgacaaagatgtttatttcccagtgaaagtcgcgcataagcttctggagggagatgtagaaagcttgatagatcccaacttacatggcgacgccaacttaacagaggttgagagagtttgcaaggttgcttgttggtgtattcaagataatgagttcgaccgacctactatgggtgaagtggttcaaattctcgagggaatatttgaacttgacacacctccaatgccaagactactgcaagctattgccggaagctcttgttctattgcagaataa
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| Protein seq | MPLALTLLGLLLLSLHISASCAAMDTMTPAQALFGNGKLISSNGKFALGFFQTGSKSSHNTLNWYLGIWYNKIPKLTPVWVANGDNPVTDPNNSELTISGDGGLVILDRSNRSIVWSTRINITTNDTVAMLLNSGNLVLQNFLNSSDALWQSFDYPTHTFLPGAKLGWSKISGLNSRLVSRKNSIDLAPGKYSVELDPSGANQYIFTLLNSSTPYLTSGVWNGQYFPSIPEMAGPFIVNFTFVDNDQEKYFTYSLLDETVVFHHFLDVSGRTKTFVWLEGSQDWVMTYAQPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDRTDGCMRNTPLDCASNKTASSLTDKFHSMPCVRLPQNGYSIEAATNADKCALVCLSNCSCTAYSYGNGGCLVWHAELFDVKQQQCDGITDTNGGTLYIRLASREEQSQKKNRRGLIIAIALGRRNSNGGCITGGDKDVYFPVKVAHKLLEGDVESLIDPNLHGDANLTEVERVCKVACWCIQDNEFDRPTMGEVVQILEGIFELDTPPMPRLLQAIAGSSCSIAE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.307075 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0161850 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34390 | RBH | 0.068536 | 0.0 | 0.052151 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0161850 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013150 | SBH | 0.031411 | 0.866329 | 0.576742 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013940 | SBH | 0.178881 | 0.000000 | 0.182299 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019640 | RBH | 0.202086 | 1.066259 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | SBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013610 | RBH | 4.982869 | 1.540870 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0328500 | SBH | 2.370298 | 0 | 0.023448 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012520 | SBH | 0.081596 | 0.047716 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0326100 | SBH | 0.2829205 | 0 | 0.585116 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013120 | SBH | 0.073935 | 0.018073 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012800 | SBH | 0.035199 | 2.476301 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012810 | SBH | 0.000000 | 10.048559 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013410 | SBH | 0.169686 | 0.172605 | 0.267748 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013560 | SBH | 0.083392 | 0.400274 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012670 | SBH | 0.284199 | 0.643363 | 0.235737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012660 | SBH | 0.428041 | 1.303368 | 1.550173 |
