Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0205900 | OGI:11015440 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:5342926-5345614 | ||||||||
| Gene Symbol | OsFbox586, Os_F0088, Fbox-13 | ||||||||||
| DNA seq | TCAAGCATCTTCATTGTCATCCTCATTTCCCTCTTCGTAAGAGTCTTCGTCTTCATCTTCATCATCATCGTCTTCGTAAGAGTCTTCATCTTCATCTTTATCATCATCGTCTTCGTAAGAGTCTTCATCATCATCTCCATCTCTATCTTCGTCTTCGTCTTCGTCATCATCAAAAATCCCGATTTCCTCAAAATTGAAAACTGCAGAAATAACAAATACGACAAGCACAGTAAATTTCAAGATGTCTCAGCTGAAAATTAACTTACAGAAGTTTCAGTTACTTCAAAACGAAAACATTGAATCAGTTGACAAAGGTAGTCCATTAGATCAATCTTTCCAAATACAAATTGCTACAAATACCACATTACTTCTCCATAAAAAATTCTGATTATACCCACTACTTCATTCAAAGAAAAGAAACATAATAAAATGCCCTAACTTGGGGAAGTATTGACCCTTTATTTCCTGGTTGCAGCTTATACTGCAGAGTTGATGGATTCTCTATAGCCTGGCACACAACAATAGAGAAATATGCATGCTCTAGGGACTATAAGGGTACTTATAATAACTGGTAAACAAGATGCTTGGACTTCAGGCCTCAATGGCCAGGTGCCGTGAGTAGAGCCCCCACCTAACAAATATAATCTAGAGGCACCGAAAAACATTATCTTAGCTAAACAAAAGAACTAAGCAATCTTATGCAGTTATTGGCACTAGTTGCTATGATGTGACTAGGATGGTTAGTGCAGACAGCTAAAGAGCACATTCAGGCATTCAGCCCTATGGTAGGTTAAGCTGAGACTTCAGAAGAACAGTATTCTCTCACATTAGTAGTTTGACAACGTGATAAGCAGTCTGTGAGGTACTTGTCCACATGGCAAATGACATGGGAGCAATAAGAGCAAGTAATAAACTGGAATTCAAGATGGCAACATCAACATAAACTGCAATATGCAACTGATGGGAAAGAAAATAAAATCAAATGATTGAAAGATATAATTACAGCCATATTACATAAAAATTATCATGCTGGTTGTGTGATGCAAGGAAGTTTTAAGAAATCTTTGTATGGTTTTTCTTCTTTGGATACTACCAGCCAAAAGAGTTATACTAGGTAATTTCTTCCCAATCAGACCAAATGCAGTGCATGCTTTAATTTCTGAATCAATCCCTGTTCCTAGCCATTTCCAGTGAACTTAAGAGTTTCAATACTGCTTGCTATGTTTCACGCATATGAAGAAGGAAAATCTCTGAAATATAGAAAAAAATGAAGTATGTTCTTTACGTATGTTAAATGTAGACAGATACTTCAAAACTTCGTCTACAAAGTTATCAATCATTTCACATCTGATTTCAACTATCTCAAGGTGTGCTGATATTGCAGCTGATCTATCCACTGAAGAGCAGTTTCCGTTGATTTTCATTATATGTTCAGGTCCCTGTCAGAAATTAAAACATTTAATAAGAACAATAGAAAAATGTTTAAAACCTTCAACAACGAATTATATGTCAAATTAGAGAAGGTATACCTCAGAATATATCTGAAGAATGAGATTCTCCAGAACCGGTGAATGTTCAAGAATGCAAGCTAGTGCACTATAATCATCAGGCACACACCAATATTCATTGAGTAACAAAGTCTTTAACTTCGTAAATGTTGGGCACCATTTCAAATCCCTTCTGAAAATAAACTGTACAGAATACAAATAAGAAGATAAACAAATCCTCACAGTTTGAGTGGATATAAGCACGGTTATAGAAATGATATAATATAAACGAACTAAAGATGGAAGTGCAAGCGTACTGATTTTTGTTTATTTATCAGAACCAACGTCTTAGCGTTCGATAAACCTTCCAGAAGCACACATTTGTTGTCCTTGATACCATAACAAGATTCACAGCCCTCATGACTACAATCCCCAGAGTTAGATTCACTACAAAAGTCTTTAGTATAGAAGAAGATTCTCACAAATGCGTCAACTAATGATGGCATCCTCTCAAGCACTGGAGCCCGGTTGTCAAACTCATCAAGCCGCAGAGAAACAAGACTTGGGACATCTACACGTACTCGCAAGGTCGCATTGAAACTACAGCAAGTGATGCTCAGACGTTTCACCGAGTTAGATGAGATCTTGGCACACTCGAAGAAACAAAACTCAAACAATAGATGCTCCAACGCTGGACAGCTCGAGAAGTTAAGGAAGCTATCATTTAGACTTATACCGTAAAGCTGTAGCCTTGTCAAGTGCCGGGAGACAAGAGGCAGCTCATCTATCGGAACCGGGTCATAAAACTCCCAGTTTTCAAGCTGGAGGAACCGAACTTTGCGAAGCAGAGCATGCTTGAACCAAAAATTCAGCCGGGCTGCGTCCTCGATGAGCTCTTTGCTGTGCTCACTAAACCTTAGCACGCAGGTTTCCATAGGCACACTATCACGGAGTACCAACAGATGGTCAAGAAACTCCTGGTGGTCCTTCACGCTTCCCGGATCAGTCTCGCCCTCGCCAATGCGCACCCCCGTGGCGGACTTCCAGAGGTGGCGCCATCGCCGGGCTAGCAGGCACGTCCGGACGGCCTCCTGCGCCGGTAGGAAGGAGAGCACGTGGTGGAGCACCTCGTCCGGGAGGTCCCCTATCCGGTCGCCGCCGGTCGAGCCGGGCGATTCCTTGGCCTTCTTCCGCGGAGACAT
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| CDS seq | ATGTCTCCGCGGAAGAAGGCCAAGGAATCGCCCGGCTCGACCGGCGGCGACCGGATAGGGGACCTCCCGGACGAGGTGCTCCACCACGTGCTCTCCTTCCTACCGGCGCAGGAGGCCGTCCGGACGTGCCTGCTAGCCCGGCGATGGCGCCACCTCTGGAAGTCCGCCACGGGGGTGCGCATTGGCGAGGGCGAGACTGATCCGGGAAGCGTGAAGGACCACCAGGAGTTTCTTGACCATCTGTTGGTACTCCGTGATAGTGTGCCTATGGAAACCTGCGTGCTAAGGTTTAGTGAGCACAGCAAAGAGCTCATCGAGGACGCAGCCCGGCTGAATTTTTGGTTCAAGCATGCTCTGCTTCGCAAAGTTCGGTTCCTCCAGCTTGAAAACTGGGAGTTTTATGACCCGGTTCCGATAGATGAGCTGCCTCTTGTCTCCCGGCACTTGACAAGGCTACAGCTTTACGGTATAAGTCTAAATGATAGCTTCCTTAACTTCTCGAGCTGTCCAGCGTTGGAGCATCTATTGTTTGAGTTTTGTTTCTTCGAGTGTGCCAAGATCTCATCTAACTCGGTGAAACGTCTGAGCATCACTTGCTGTAGTTTCAATGCGACCTTGCGAGTACGTGTAGATGTCCCAAGTCTTGTTTCTCTGCGGCTTGATGAGTTTGACAACCGGGCTCCAGTGCTTGAGAGGATGCCATCATTAGTTGACGCATTTGGACCTGAACATATAATGAAAATCAACGGAAACTGCTCTTCAGTGGATAGATCAGCTGCAATATCAGCACACCTTGAGATAGTTGAAATCAGATTTTTCAATTTTGAGGAAATCGGGATTTTTGATGATGACGAAGACGAAGACGAAGATAGAGATGGAGATGATGATGAAGACTCTTACGAAGACGATGATGATAAAGATGAAGATGAAGACTCTTACGAAGACGATGATGATGAAGATGAAGACGAAGACTCTTACGAAGAGGGAAATGAGGATGACAATGAAGATGCTTGA
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| Protein seq | MSPRKKAKESPGSTGGDRIGDLPDEVLHHVLSFLPAQEAVRTCLLARRWRHLWKSATGVRIGEGETDPGSVKDHQEFLDHLLVLRDSVPMETCVLRFSEHSKELIEDAARLNFWFKHALLRKVRFLQLENWEFYDPVPIDELPLVSRHLTRLQLYGISLNDSFLNFSSCPALEHLLFEFCFFECAKISSNSVKRLSITCCSFNATLRVRVDVPSLVSLRLDEFDNRAPVLERMPSLVDAFGPEHIMKINGNCSSVDRSAAISAHLEIVEIRFFNFEEIGIFDDDEDEDEDRDGDDDEDSYEDDDDKDEDEDSYEDDDDEDEDEDSYEEGNEDDNEDA |
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| Function | MEIOTIC F-BOX protein MOF [UniProtKB/Swiss-Prot:Q7X7A4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0205900 | Os11t0205900-00 | Chr11 | 5342926 | 5345614 | - | irgsp1_rep | ||
| CDS seq | ATGTCTCCGCGGAAGAAGGCCAAGGAATCGCCCGGCTCGACCGGCGGCGACCGGATAGGGGACCTCCCGGACGAGGTGCTCCACCACGTGCTCTCCTTCCTACCGGCGCAGGAGGCCGTCCGGACGTGCCTGCTAGCCCGGCGATGGCGCCACCTCTGGAAGTCCGCCACGGGGGTGCGCATTGGCGAGGGCGAGACTGATCCGGGAAGCGTGAAGGACCACCAGGAGTTTCTTGACCATCTGTTGGTACTCCGTGATAGTGTGCCTATGGAAACCTGCGTGCTAAGGTTTAGTGAGCACAGCAAAGAGCTCATCGAGGACGCAGCCCGGCTGAATTTTTGGTTCAAGCATGCTCTGCTTCGCAAAGTTCGGTTCCTCCAGCTTGAAAACTGGGAGTTTTATGACCCGGTTCCGATAGATGAGCTGCCTCTTGTCTCCCGGCACTTGACAAGGCTACAGCTTTACGGTATAAGTCTAAATGATAGCTTCCTTAACTTCTCGAGCTGTCCAGCGTTGGAGCATCTATTGTTTGAGTTTTGTTTCTTCGAGTGTGCCAAGATCTCATCTAACTCGGTGAAACGTCTGAGCATCACTTGCTGTAGTTTCAATGCGACCTTGCGAGTACGTGTAGATGTCCCAAGTCTTGTTTCTCTGCGGCTTGATGAGTTTGACAACCGGGCTCCAGTGCTTGAGAGGATGCCATCATTAGTTGACGCATTTGGACCTGAACATATAATGAAAATCAACGGAAACTGCTCTTCAGTGGATAGATCAGCTGCAATATCAGCACACCTTGAGATAGTTGAAATCAGATTTTTCAATTTTGAGGAAATCGGGATTTTTGATGATGACGAAGACGAAGACGAAGATAGAGATGGAGATGATGATGAAGACTCTTACGAAGACGATGATGATAAAGATGAAGATGAAGACTCTTACGAAGACGATGATGATGAAGATGAAGACGAAGACTCTTACGAAGAGGGAAATGAGGATGACAATGAAGATGCTTGA
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| Protein seq | MSPRKKAKESPGSTGGDRIGDLPDEVLHHVLSFLPAQEAVRTCLLARRWRHLWKSATGVRIGEGETDPGSVKDHQEFLDHLLVLRDSVPMETCVLRFSEHSKELIEDAARLNFWFKHALLRKVRFLQLENWEFYDPVPIDELPLVSRHLTRLQLYGISLNDSFLNFSSCPALEHLLFEFCFFECAKISSNSVKRLSITCCSFNATLRVRVDVPSLVSLRLDEFDNRAPVLERMPSLVDAFGPEHIMKINGNCSSVDRSAAISAHLEIVEIRFFNFEEIGIFDDDEDEDEDRDGDDDEDSYEDDDDKDEDEDSYEDDDDEDEDEDSYEEGNEDDNEDA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0205900 | RBH | 1.098092 | 0.617297 | 0.994822 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g09970 | RBH | 0.763508 | 0.308914 | 0.509416 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006690 | SBH | 0.419972 | 2.097456 | 3.382823 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006550 | RBH | 0.142942 | 0.162571 | 0.531425 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006530 | RBH | 0.629927 | 3.859250 | 2.320578 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006430 | SBH | 0.026985 | 0.037452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006500 | RBH | 3.054646 | 0.000000 | 3.525641 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089800 | SBH | 0.4881505 | 1.281045 | 0.838145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006520 | SBH | 0.112591 | 0.000000 | 0.288314 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0085700 | SBH | 5.4372965 | 2.440776 | 7.4983255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006490 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006580 | SBH | 0.079067 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006550 | RBH | 0.898805 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006620 | RBH | 0.040105 | 0.0 | 0.065152 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006540 | SBH | 0.147365 | 0.486698 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006600 | RBH | 0.107812 | 1.806731 | 0.886747 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006370 | SBH | 0.242504 | 2.849076 | 0.510408 |
