Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g12260 | OGI:11020210 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:6845297-6848371 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTGGGTATGGGGTACCCATAATCTCCACAAGTTTGGCTCTGCAAATGATTTTGGCACAATGGTAGAGATTGATAAGGATGTTCGTCGTTTGTCATCTTACCGATGGAAAGACGGTACTGCACCCAGACTTAATCTTCCACGCCTTCGAACTCTAGTATCACTTGAAGCAATTTCATCTTCCCCAGACATGTTGTCCTCAATTTTGTATGGATCAAGCTATCTTACTGTTCTTGAGCTTCAAGATTCAGAAATCACTCAAGTGCCAGCAACTATAGGGAATTTATGTAACTTGCGTTATATTGGCTTGCGACGCACCAAGGTGAAATCACTCCCGGGCTCTGTTGAAAAGTTATCAAACCTCCAAACGCTAGACATCAGGCAAACGCATATAGAGAGTCTACCACAAGGAATCACTAAAATAAAAAAGCTAAGGCACTTGTTAGCTGATAGATATGCTGATGAAAAGCACTCAGAGTTCCGGTTTTTCATAGGAATGCAAGCACCTAAAGATATGTCCAACCTTAAAGAACTACAAACTCTTGAGACCATGGAAGCGAGCAAAGACTTGGCCAAGCAGCTGAAGGAACTAATACAACTACAAAGTGTGTGGATTGATGGCATAAGTTCTGTCGATTGTCAAAATATTTTTGATTCACTATCAAAGATGCCGCTTCTTTCTAGTTTGCTTCTTTCTGCAAGGGATCAGAATGAACGACTCTGCTTTGAGGCATTCAAGCCCATCTCCACTCAATTACACAGGTTAATTATCAGAGGGAAATGGGCCACTGGAACAATGGACTGCCCAATATTTCGTACCCATGGCACATGTGTCAAATATTTAGCTCTAAGTTGGTGTGATCTTGGGGATGATCCATTAAGGATGCTTGCATTATTGCACTTGCCAAATCTCACACATCTGAGACTGAGCAACATGCATAATGCAAAAAAGTTGGTTCTATATGCAGAAAACTTTTTCCGCCTGAAGTCCCTTGTTTTGAAGGACATGCCACATGTCAACCAGATAAATATTATAGGTGGCTCTCTGTCATGCATTGAAGCTTTGTACATCTTGGCACTGCCAAACCTGGACAAAGTCCCACTGGGCATTGAATCCATTCTCTCCCTGAAGAAACTATGGCTGCTGGGCTTGCACATGGACTTTAGGAAGCAATGGAACAATAGTGGAATGCACCAGAAGATGCAGCATATTCCAGAGGTATGTATTTATGTAAACTGTGTCTGTTGCTGTGACATTTTAAGCCCCAGGGTTTAGGTGATCTGTGTTGGTATCACATATATACTACCCTGTTTCAATTTATATGGTTGGTAATTAATGAGCTTTTCACATAGTGTGTATTTCATTCACAGTTGATCTACCTATAGAAATGCCATTTCTGAATGTATAATTACAGTCTTTCATGTCCCTCAATGCCAGATCAGATGTACATCATCTACTTCTCTCTACAATGGGGATGAGCTCAGTCTCTCAGGTAACTTATCAATTTGTAATGCTAGTCGGTATACTCCGTACCTCTCCAGAAGTTGCACCAACCATGTTCATGGATTGTCATTACCAACTGTTACATTGGGATTATAGACAAAACTGTAAAGTGTGTTTCGGGATCTCTTTTTTGAGTAGAAACTTGATTGTTTGGGTTTAATATAGGAGAAACTTGTTCTATATACAACTTGCCAGATTGCATGGATTGTTATCAAAATGACCTAGTTGGCTGTAGTCATGCATGGTTAGGGGAATGATTAGCTGGATTAACAATGAACTCCTGTATTATGCGTAAATTGATCTCCAAAGAGAACCACCAGCAGCAACAACAACAAATAAATAACAATAATAATCAATCAATCCTTTGATTATGATTTAACTTCATTTTTATCGCATATCACACAGAGTTCACAACATTTTTTTTGCAATTGTACATGCCGATACTTGGACAATAGACCATTGATCAGATGACCATTATTTACATATCTAATGAATCTACCAAAGAATCAATGTGTCACGATGGTTGTAGCTAATAAAAGGCATATGCTTTTTTCTTATCTAGGAGGATTTGGGTCATCAAAAATGGACCATAACATGTAAACATGGTATACTGGAGGACAAGTTAGAGGCTCCACGTGCAACTCCAATGTATGCCGTGCCTTCCGAGTTCTCAAAAACTGTGGAGCCAACAGATCTAAAGCATGAGTTTCTAAAAGAAATTACAAACAATTTCTCCAAGGAACAAATACTTGGTCAAGGAGCATTTGGAACTGTTTACCGGGTAAGGTTAAGGTCGTAGTTGTTTTTTCTACACAATTTTAGGAAGTAATATGTCATCATTTACCACTCAAGAGTAATAGAGACTTTGATAATATATTATATAAGTAAATAATGATAAAATAGCATTTGAATTTCATATTATTCTTTAGCATAAAAATTCATGTGCAAGCCCTTATATAATATACAATATTAGATAAAAACTTATATGCAAATGAACATTTGCTAATATCCCTTATATAATATACAACCATTAGACATTGATAAAGAATATCATGAAATTTATCAAAATTATTTGAGAAAATTAAATGTAGTAGAACTCAAATTTCACAACTTTCACATAACCTGATATTTACATTATATTACAAACGGAAAGTAATTGAAGTGATTTTATGGTCCGAGGAGGTAATGCAAGGTACCGCGTTTTCTAAAATTCGATACATCTCGATATCTCCAATACGGTGCCAAATTTTTGAACTAAAAAAAATTGTATGTCTTCGTACCTCTCAAAGAACATCAAATTTTCCAATAATAATTAAGCTTATATTCAAAGCTAGGGAATTAAAAAAATGATAAATATGAACTTGATTTTTAACAATCCTGGTATAAGTCTAACATCCCAACCAGTAAAGTTATATCCTGGCAATCAAATTCGGTGTTTGAAAGAAACTTTTATACTATCTACTTCTATCACTATTGTGTACCTATAATCTAGACTTCAATTAATTTCATAATTGGATACTTAATCTTGAATGTGCAATATTATATTTGCAGACATGCTATCAATCCTCATGA
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| CDS seq | ATGTGGGTATGGGGTACCCATAATCTCCACAAGTTTGGCTCTGCAAATGATTTTGGCACAATGGTAGAGATTGATAAGGATGTTCGTCGTTTGTCATCTTACCGATGGAAAGACGGTACTGCACCCAGACTTAATCTTCCACGCCTTCGAACTCTAGTATCACTTGAAGCAATTTCATCTTCCCCAGACATGTTGTCCTCAATTTTGTATGGATCAAGCTATCTTACTGTTCTTGAGCTTCAAGATTCAGAAATCACTCAAGTGCCAGCAACTATAGGGAATTTATGTAACTTGCGTTATATTGGCTTGCGACGCACCAAGGTGAAATCACTCCCGGGCTCTGTTGAAAAGTTATCAAACCTCCAAACGCTAGACATCAGGCAAACGCATATAGAGAGTCTACCACAAGGAATCACTAAAATAAAAAAGCTAAGGCACTTGTTAGCTGATAGATATGCTGATGAAAAGCACTCAGAGTTCCGGTTTTTCATAGGAATGCAAGCACCTAAAGATATGTCCAACCTTAAAGAACTACAAACTCTTGAGACCATGGAAGCGAGCAAAGACTTGGCCAAGCAGCTGAAGGAACTAATACAACTACAAAGTGTGTGGATTGATGGCATAAGTTCTGTCGATTGTCAAAATATTTTTGATTCACTATCAAAGATGCCGCTTCTTTCTAGTTTGCTTCTTTCTGCAAGGGATCAGAATGAACGACTCTGCTTTGAGGCATTCAAGCCCATCTCCACTCAATTACACAGGTTAATTATCAGAGGGAAATGGGCCACTGGAACAATGGACTGCCCAATATTTCGTACCCATGGCACATGTGTCAAATATTTAGCTCTAAGTTGGTGTGATCTTGGGGATGATCCATTAAGGATGCTTGCATTATTGCACTTGCCAAATCTCACACATCTGAGACTGAGCAACATGCATAATGCAAAAAAGTTGGTTCTATATGCAGAAAACTTTTTCCGCCTGAAGTCCCTTGTTTTGAAGGACATGCCACATGTCAACCAGATAAATATTATAGGTGGCTCTCTGTCATGCATTGAAGCTTTGTACATCTTGGCACTGCCAAACCTGGACAAAGTCCCACTGGGCATTGAATCCATTCTCTCCCTGAAGAAACTATGGCTGCTGGGCTTGCACATGGACTTTAGGAAGCAATGGAACAATAGTGGAATGCACCAGAAGATGCAGCATATTCCAGAGTCTTTCATGTCCCTCAATGCCAGATCAGATGTACATCATCTACTTCTCTCTACAATGGGGATGAGCTCAGTCTCTCAGGAGGATTTGGGTCATCAAAAATGGACCATAACATGTAAACATGGTATACTGGAGGACAAGTTAGAGGCTCCACGTGCAACTCCAATGTATGCCGTGCCTTCCGAGTTCTCAAAAACTGTGGAGCCAACAGATCTAAAGCATGAGTTTCTAAAAGAAATTACAAACAATTTCTCCAAGGAACAAATACTTGGTCAAGGAGCATTTGGAACTGTTTACCGGACATGCTATCAATCCTCATGA
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| Protein seq | MWVWGTHNLHKFGSANDFGTMVEIDKDVRRLSSYRWKDGTAPRLNLPRLRTLVSLEAISSSPDMLSSILYGSSYLTVLELQDSEITQVPATIGNLCNLRYIGLRRTKVKSLPGSVEKLSNLQTLDIRQTHIESLPQGITKIKKLRHLLADRYADEKHSEFRFFIGMQAPKDMSNLKELQTLETMEASKDLAKQLKELIQLQSVWIDGISSVDCQNIFDSLSKMPLLSSLLLSARDQNERLCFEAFKPISTQLHRLIIRGKWATGTMDCPIFRTHGTCVKYLALSWCDLGDDPLRMLALLHLPNLTHLRLSNMHNAKKLVLYAENFFRLKSLVLKDMPHVNQINIIGGSLSCIEALYILALPNLDKVPLGIESILSLKKLWLLGLHMDFRKQWNNSGMHQKMQHIPESFMSLNARSDVHHLLLSTMGMSSVSQEDLGHQKWTITCKHGILEDKLEAPRATPMYAVPSEFSKTVEPTDLKHEFLKEITNNFSKEQILGQGAFGTVYRTCYQSS |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g12260 | LOC_Os11g12260.1 | Chr11 | 6845297 | 6848371 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGGGTATGGGGTACCCATAATCTCCACAAGTTTGGCTCTGCAAATGATTTTGGCACAATGGTAGAGATTGATAAGGATGTTCGTCGTTTGTCATCTTACCGATGGAAAGACGGTACTGCACCCAGACTTAATCTTCCACGCCTTCGAACTCTAGTATCACTTGAAGCAATTTCATCTTCCCCAGACATGTTGTCCTCAATTTTGTATGGATCAAGCTATCTTACTGTTCTTGAGCTTCAAGATTCAGAAATCACTCAAGTGCCAGCAACTATAGGGAATTTATGTAACTTGCGTTATATTGGCTTGCGACGCACCAAGGTGAAATCACTCCCGGGCTCTGTTGAAAAGTTATCAAACCTCCAAACGCTAGACATCAGGCAAACGCATATAGAGAGTCTACCACAAGGAATCACTAAAATAAAAAAGCTAAGGCACTTGTTAGCTGATAGATATGCTGATGAAAAGCACTCAGAGTTCCGGTTTTTCATAGGAATGCAAGCACCTAAAGATATGTCCAACCTTAAAGAACTACAAACTCTTGAGACCATGGAAGCGAGCAAAGACTTGGCCAAGCAGCTGAAGGAACTAATACAACTACAAAGTGTGTGGATTGATGGCATAAGTTCTGTCGATTGTCAAAATATTTTTGATTCACTATCAAAGATGCCGCTTCTTTCTAGTTTGCTTCTTTCTGCAAGGGATCAGAATGAACGACTCTGCTTTGAGGCATTCAAGCCCATCTCCACTCAATTACACAGGTTAATTATCAGAGGGAAATGGGCCACTGGAACAATGGACTGCCCAATATTTCGTACCCATGGCACATGTGTCAAATATTTAGCTCTAAGTTGGTGTGATCTTGGGGATGATCCATTAAGGATGCTTGCATTATTGCACTTGCCAAATCTCACACATCTGAGACTGAGCAACATGCATAATGCAAAAAAGTTGGTTCTATATGCAGAAAACTTTTTCCGCCTGAAGTCCCTTGTTTTGAAGGACATGCCACATGTCAACCAGATAAATATTATAGGTGGCTCTCTGTCATGCATTGAAGCTTTGTACATCTTGGCACTGCCAAACCTGGACAAAGTCCCACTGGGCATTGAATCCATTCTCTCCCTGAAGAAACTATGGCTGCTGGGCTTGCACATGGACTTTAGGAAGCAATGGAACAATAGTGGAATGCACCAGAAGATGCAGCATATTCCAGAGTCTTTCATGTCCCTCAATGCCAGATCAGATGTACATCATCTACTTCTCTCTACAATGGGGATGAGCTCAGTCTCTCAGGAGGATTTGGGTCATCAAAAATGGACCATAACATGTAAACATGGTATACTGGAGGACAAGTTAGAGGCTCCACGTGCAACTCCAATGTATGCCGTGCCTTCCGAGTTCTCAAAAACTGTGGAGCCAACAGATCTAAAGCATGAGTTTCTAAAAGAAATTACAAACAATTTCTCCAAGGAACAAATACTTGGTCAAGGAGCATTTGGAACTGTTTACCGGACATGCTATCAATCCTCATGA
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| Protein seq | MWVWGTHNLHKFGSANDFGTMVEIDKDVRRLSSYRWKDGTAPRLNLPRLRTLVSLEAISSSPDMLSSILYGSSYLTVLELQDSEITQVPATIGNLCNLRYIGLRRTKVKSLPGSVEKLSNLQTLDIRQTHIESLPQGITKIKKLRHLLADRYADEKHSEFRFFIGMQAPKDMSNLKELQTLETMEASKDLAKQLKELIQLQSVWIDGISSVDCQNIFDSLSKMPLLSSLLLSARDQNERLCFEAFKPISTQLHRLIIRGKWATGTMDCPIFRTHGTCVKYLALSWCDLGDDPLRMLALLHLPNLTHLRLSNMHNAKKLVLYAENFFRLKSLVLKDMPHVNQINIIGGSLSCIEALYILALPNLDKVPLGIESILSLKKLWLLGLHMDFRKQWNNSGMHQKMQHIPESFMSLNARSDVHHLLLSTMGMSSVSQEDLGHQKWTITCKHGILEDKLEAPRATPMYAVPSEFSKTVEPTDLKHEFLKEITNNFSKEQILGQGAFGTVYRTCYQSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0228800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12350 | SBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0228800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008080 | SBH | 0.418868 | 14.766461 | 1.036938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007970 | SBH | 0.305399 | 8.817049 | 1.676870 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007770 | SBH | 0.137865 | 0.304908 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007860 | SBH | 1.050933 | 5.437952 | 4.828925 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0106000 | SBH | 1.373814 | 6.078619 | 1.017997 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007900 | SBH | 0.246380 | 0.692657 | 0.378460 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008010 | SBH | 0.031650 | 0.052251 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008080 | SBH | 0.141007 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008010 | SBH | 0.739403 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007980 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007980 | SBH | 0.180296 | 1.474919 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008000 | SBH | 0.370055 | 4.354017 | 0.451209 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007910 | SBH | 0.162102 | 7.456972 | 4.811376 |
