Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0007980 | OGI:11019820 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:7085030-7086501 | ||||||||
| Gene Symbol | YR5, - | ||||||||||
| DNA seq | atggagtggacgtgagcggcgcggcgcggcggcggccgtggccgtcgccggcgagagggtgttggggctggccactgggcaccggattgtccatatgcggtgcgaccgtgcgagttgaagtgaccaatgggctgggccgggaagaaggcggcctatgcttgttgggctgagaaggggatacacaagttgggccgacctgtttttgcataggaataagttcactttgttaccctcaaaagtgatcaaaatctaatccatgaccctaaaccacaaaaccggatatctcgactccccaactcttataaccggatattgcttcagatctatccgcctagaattctcaccacgtggagctggagctaaaccaaagtgctgctataataaggctaaaccaaatttactttatatagcacatatggccatctttgaacgaatcattctaaattagaactgcatgtatgcgttttttttttctcctcaaaaaaaaaatccgagtttcttggatggaacctggcattctttgttgttacttgtttaatttacgttacattggcttaaggcggacaagactctactcactaccagagtctattgacaagctctccaacctttaaactctggacatcaagcaaaccaaaatagagaagctaccacgtggaatcactaagatcaagaagctaaggcacctgctagctgatagatctgatggtgagaaacattcagagttccggtacttcaaaggagtgcaagcacccaatgatctgtctaagttgaagaacttcagactcttgagactgtggaagccagcaaggacttggccgagcagctgaaggaactaatgcagataagaagtatttggatgacaacataagttctgctgattgtggaaatattttgctacactatcaaatatgccgcttctttccagcttgcttctttcggcaaaggatgaaaatgagccactttgctttgaggctctccagcccatttccaatgaactccacaggttaattatcagagggcaatgtgctaagggcacactagactacccgatatttcatagccatggtacacatctgaaatatttagctctaagtaggtgtaatcttggagaggatccattggcgatgcttgcatcacatttgtcaaacctcacttatctaagactgaacaacatgcatagcgcAaaaagattggttcttgacgcggcggctttcccatgcctgaagacacttgtgctaaagcacatgcctgatgtcaaccagctaaaaattataagtggtgcacttccagtcattgaaggtttgtacattgtggctctgtcagggctggagagtgtcccttctggcattgaaacccttcggaccctgaagaaactctggctggttgatctgcactgggacttcgaagctcactggattgagagtgagatggaccaaaaaatgcagcatgttcaagagctgattttgtag
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| CDS seq | atggagtggaccttgcttctttcggcaaaggatgaaaatgagccactttgctttgaggctctccagcccatttccaatgaactccacaggttaattatcagagggcaatgtgctaagggcacactagactacccgatatttcatagccatggtacacatctgaaatatttagctctaagtaggtgtaatcttggagaggatccattggcgatgcttgcatcacatttgtcaaacctcacttatctaagactgaacaacatgcatagcgcAaaaagattggttcttgacgcggcggctttcccatgcctgaagacacttgtgctaaagcacatgcctgatgtcaaccagctaaaaattataagtggtgcacttccagtcattgaaggtttgtacattgtggctctgtcagggctggagagtgtcccttctggcattgaaacccttcggaccctgaagaaactctggctggttgatctgcactgggacttcgaagctcactggattgagagtgagatggaccaaaaaatgcagcatgttcaagagctgattttgtag
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| Protein seq | MEWTLLLSAKDENEPLCFEALQPISNELHRLIIRGQCAKGTLDYPIFHSHGTHLKYLALSRCNLGEDPLAMLASHLSNLTYLRLNNMHSAKRLVLDAAAFPCLKTLVLKHMPDVNQLKIISGALPVIEGLYIVALSGLESVPSGIETLRTLKKLWLVDLHWDFEAHWIESEMDQKMQHVQELIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0007980 | OsLiXu_11g0007980.01 | Chr11 | 7085030 | 7086501 | + | NAM | ||
| CDS seq | atggagtggaccttgcttctttcggcaaaggatgaaaatgagccactttgctttgaggctctccagcccatttccaatgaactccacaggttaattatcagagggcaatgtgctaagggcacactagactacccgatatttcatagccatggtacacatctgaaatatttagctctaagtaggtgtaatcttggagaggatccattggcgatgcttgcatcacatttgtcaaacctcacttatctaagactgaacaacatgcatagcgcAaaaagattggttcttgacgcggcggctttcccatgcctgaagacacttgtgctaaagcacatgcctgatgtcaaccagctaaaaattataagtggtgcacttccagtcattgaaggtttgtacattgtggctctgtcagggctggagagtgtcccttctggcattgaaacccttcggaccctgaagaaactctggctggttgatctgcactgggacttcgaagctcactggattgagagtgagatggaccaaaaaatgcagcatgttcaagagctgattttgtag
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| Protein seq | MEWTLLLSAKDENEPLCFEALQPISNELHRLIIRGQCAKGTLDYPIFHSHGTHLKYLALSRCNLGEDPLAMLASHLSNLTYLRLNNMHSAKRLVLDAAAFPCLKTLVLKHMPDVNQLKIISGALPVIEGLYIVALSGLESVPSGIETLRTLKKLWLVDLHWDFEAHWIESEMDQKMQHVQELIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0229700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12350 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0229700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008080 | SBH | 0.418868 | 14.766461 | 1.036938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008070 | RBH | 0.0 | 1.969321 | 0.183177 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007980 | RBH | 0.114973 | 0.0 | 0.751325 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007890 | RBH | 0.093749 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007930 | RBH | 11.121528 | 1.201072 | 13.343512 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0106000 | RBH | 1.373814 | 6.078619 | 1.017997 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007970 | RBH | 0.879948 | 0.0 | 1.119563 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0112200 | RBH | 15.4623085 | 6.930455 | 2.7797995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008020 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008090 | RBH | 0.094717 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008070 | RBH | 0.000000 | 3.755952 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065170 | RBH | 0.705851 | 0.0 | 0.322007 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008050 | RBH | 0.714762 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007920 | RBH | 0.433281 | 1.544556 | 0.306686 |
