Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g11880 | OGI:11019800 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:6591185-6595164 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGTTTGAAGGGTTGTTGCAGCCTTTGGGGATCTCGTACCGGGTCTCACTCTACACGGACGATGTGGTCACCTTCATTCGGCCGACGGTGGAGGAGATTCGTGCTGCGATGGAGGTGCTCTCCATCTTCGGGGAAGCATCCGGTCTTCGAACGAACTTTGCTAAGTGTTCGACACTTCCAATTCAATGCAATGAGGCGGACCTCCAAATCCTTCAAGATGAACAGCCTTGCCAGGTCGCTTCCTTCCCTTGCACATACCTGGGGTTGCTTCTCTCCATCTTCCGCCTAAAGAAAGAGGACTTGCAACCGCTAATTGACAAAATCGGTCGTCGTCTTCCGCTTTGGATGTCGCACTTGATGACGTCCATCGGCCGGGCAACCATGGTGAACGCTGTTTTGAGCTCAATCCCAATTTATTTGTTAATGGCGATCAATGCACCGAAATGGGTAATCAAGGGGATCGACAAAATCCGTCGCGGTTTTTTGTGGGCCGGGAAAGCTTTGGTGAGTGGTGGCGCATGCCGGGTTGCTTGGGCTCGGGTATGCTCTCCAACGGAATATGGTGGGCTGGGCTTCCCCGATCTCGAGAGGATGGGACTTGCCGAGGGTTCGACACAATTGCGACACTGGTAGCGTGGACAATCTGGAAGGAAAGAAACAACTGGATCTTCAACCAGAAGAGCAGATCTTGGATGGAGATAGCTAGGGCTATGACGGGGGGAAGCGGACCTTTGGCGGATGGCTAGATCAGCCATACCGACCATGGTAGTCCCTTACATGGGTCGCCAAATCCTTCGGAAGATTAGGCTTTTGTTTTTCTTTCCCCCTCCTGTACCCTGTCCCATTTACTTTTATTTTTTCCGGCCCGCTCTATACATACATTTATTCCTCTTAATACAAAAATGCACGTCTCGCGTATTCCCAAAAAATCCGGCTGCCTAAGCCATAGAGACTTCCGAAGTGCATTATTCAGCTCCGCAAACTCTGCATTTTGAAAGTTTCTGTTAGAGAACTTCTGGTAAGTGATATTTACATCCTCACAGAATTACCTTCCCTCAGAGCTCTCTCACTTCGTGTCCAGACAGCTCCTGAGGGAAAGATCATCTTCAGTGAGGGAGCACTACCAGTTCTCAGGTATTTTAGATTTGAATGTGGTGTTCTCTGCCTGGAGTTCAGACCTGGAGCAATGCCCAATCTTCAGAGACTCAAGCTAGGCTTCAATACTGAACAGGAGAATTATGTCAATATGCTTGCTGGAATTGAGTACCTTTCAAACCTCCAGCATATTGCTGCACGAATTGGGCCAAATGCCAGTGTTGATGAATTTGATAGGAGGGCTGTGGATTCAGCATTCAAGAAAGCTATCACCAAGCACCCAAGGTGTCCTAGCTTCAATGTACAATGGGTGGCTTCGAGTAAGGAAGAGTGGCATCCTTCAGAGAAACAGCAGCAGAGTCAAGAAAAAGGCTCATCATCTGGAGAATATGTGACTATCAAAACAGGATCAGCAGAAGATACTGATAAGAACGTTCTTACCGGGCATAGAATCTTTCCTCAACCATCAGGTAAGGCGCATTCAAGCACGCAACATAAAGGGTCATTAGCTGGACAAGATTGGACTATAGAGAAAGAATCAGTACAAGATATGACGAAGGAATCTTTTACAGTGCTCCATCAAACCTCTAGGACGGTAAGAGCCATAATAAATCATAGCCGCTAATTATGCATATAATTTTTCTAATAAGGTGTATTTTTGTAACATATCTTGGTTCAGAAAAGAAAATGATATCAACCCTCTTAGCTGTCCTTTCTAAACATAATGTTTAACTATGCATATGCTAGTAATTAGGTTAGGTGATAGTAGTACTAATTTTGCAACAGCTGGCCATAGTTTTATGTGATTTAACAGCTGACCATATTTTTTAAGAGGTTTTCTCCCATCCTTGAAGAAGTATATACCTCCTTATACTTGAGAGTTACCTTTCCATTAAGTGAGGTATGAAAACTAATTTTACAGGTTGGAGTAGGATTGGAAACCTATCTTTATATATGTTCCTGACCTTTTACTTTTGTTATGTTTTTTAGAGGTTGTTATTCATGAGGTATATACCTCCACTTTGTGGGAGGTATTCTCTCTATTCTATAAAAATCCAACTTCTGGCTATGAATCTAGACATATCCTACGTCCAGATTCTTAGCCAAAAGTTGAATTTTTATTGGACTGAGAGAGTATTGGTATTTATGTTAGTCAAAAGGTGCATGCTTCTACAGGAGGTATATACGTCCTGCTAACACTATGAGATATATATACATCTCTATACCTCCAAAGAATCAGAAAACTCTTACCATTGACAATTGTAAACTGGTTTCATTTTTTATCTATCAAATAGTTCGAAGGTATATACCTAAAGGATAAGAGAAAATCAATAATTTTAATTATCTTGCATATACATTTGAAGTATCAACTCTATAGTGTATGAAAATGAAATCACTGTAACACCCCAGGACCCACATAGCCCAGTATGCTCCTTAACTACGCTAGAAGAAGCTAAGTTATAAAAAACTTCTGGAAAGAAAATAGTGCAATACAGAAGCAAAATGTAAAGCACGATAACCACCATTTATTGACTCAAGATAATTGACATGAATAAAACATATTCCGTCTGTCCTAAAATATAGCAATCTAATACTGAATTTTTAGACACAACTTAGTAGTAAGCATCTAGATATATTCTTATGTCACCATTTCCATGTTCTACTTGATCTCCACAACAATTACAGCAATGCCAATTTGCCAACAAACTAGCCACGCAGTATGCGCAACGATTGAGGCAATCTTCAAACCCAATCTGACATTTAGTAGAACATGAGCGCCACCTTACCCATCTCCTGGACTGCTGCTGGACCATGCTTCTTCCCCTAGCATGCGCCCATAGCAGAGATCCAGACCACCACCTCTTCCTCTTCTCCTCCTGGACGAATGGATTGTGCAAGCTCAATGTACCAGTAGGCCTGCGACTCCAAGTTTACATGTGTGAAGCCTCAGAGCAATCCCGCAGCTAGAATGGTGTCCATAGCATTAAGTGGTATGCCACCTAGATCAAAAGATGATTTGACACCATATCAAATGTGAAAAGAGGAGAGGAGGAAACTGTGTCTTGCATCATAAGAGAAATTGGGAGAGGAACTGGTGGCACTAAATTAGCGCATTAGATTAATATTATGTGCACTTTGATGGATGATATAGACATTACTAGTATAGTTCGATTTAGGGATTTGGGAATTGGTGTGTTGCCCTGGCCGCAGCCGCACACGTCTTTATTTAGCATGTTTGTAAGTAGGTCCTCAACAGTATTACGTAATACACCATCACCACTGTTATCTGCTTATTAGATTGTGTTTTTTTCCTTTTGTGCCCTCACATTCTTTCTATTGGTATGCTAAAACCGTTGCAGACAAATCATATGGAGCCATTGGATCATAATCAGTTGAGTTTAGATGACCTAGAGGTAATCAAAGTGATCGGAAAAGGTAGTAGTGGAGTGGTGCACTTGGTTCGTGACGGACAGACTGGCCATTTTTTTGTTCTAAAGGTATTATATATTTGAAAGTGCATTCTTTGCTTTATATTATGATTTCTTCCACTTCTCTCAGAGTTTTAGCTATAATTTGACATATTCCTGACAGTTGTAACTTCATATAAGATCAGTTATGTTTTCATGGGTCTTTTGCAGGTTATACAACTAAATATCTAGGAGAGCATACGCAAACAGATTGCCCAGGAGTTGAAAATTAGCTTGTCAACACAGTGCCAGTATGTTGTTGCATGTTATCAGTGTTTTTATGCCAACGGTATTATTTCAGCTGTTTTCGAGTACATGGACTGCGGGTCTCTCTCAGATTTACTGAAGACAGTTATAACAATTCCAGAGCCCTACCTTGCTGCAATCTGCAAGCAGGCAAGTTACATGTGGTAG
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| CDS seq | ATGGAGTTTGAAGGGTTGTTGCAGCCTTTGGGGATCTCGTACCGGGTCTCACTCTACACGGACGATGTGGTCACCTTCATTCGGCCGACGGTGGAGGAGATTCGTGCTGCGATGGAGGTGCTCTCCATCTTCGGGGAAGCATCCGGTCTTCGAACGAACTTTGCTAAGTGTTCGACACTTCCAATTCAATGCAATGAGGCGGACCTCCAAATCCTTCAAGATGAACAGCCTTGCCAGGTCGCTTCCTTCCCTTGCACATACCTGGGGTTGCTTCTCTCCATCTTCCGCCTAAAGAAAGAGGACTTGCAACCGCTAATTGACAAAATCGGTCGTCGTCTTCCGCTTTGGATGTCGCACTTGATGACGTCCATCGGCCGGGCAACCATGGTGAACGCTGTTTTGAGCTCAATCCCAATTTATTTGTTAATGGCGATCAATGCACCGAAATGGGTAATCAAGGGGATCGACAAAATCCGTCGCGGTTTTTTGTGGGCCGGGAAAGCTTTGCTCCGCAAACTCTGCATTTTGAAAGTTTCTGTTAGAGAACTTCTGGTAAGTGATATTTACATCCTCACAGAATTACCTTCCCTCAGAGCTCTCTCACTTCGTGTCCAGACAGCTCCTGAGGGAAAGATCATCTTCAGTGAGGGAGCACTACCAGTTCTCAGGTATTTTAGATTTGAATGTGGTGTTCTCTGCCTGGAGTTCAGACCTGGAGCAATGCCCAATCTTCAGAGACTCAAGCTAGGCTTCAATACTGAACAGGAGAATTATGTCAATATGCTTGCTGGAATTGAGTACCTTTCAAACCTCCAGCATATTGCTGCACGAATTGGGCCAAATGCCAGTGTTGATGAATTTGATAGGAGGGCTGTGGATTCAGCATTCAAGAAAGCTATCACCAAGCACCCAAGGTGTCCTAGCTTCAATGTACAATGGGTGGCTTCGAGTAAGGAAGAGTGGCATCCTTCAGAGAAACAGCAGCAGAGTCAAGAAAAAGGCTCATCATCTGGAGAATATGTGACTATCAAAACAGGATCAGCAGAAGATACTGATAAGAACGTTCTTACCGGGCATAGAATCTTTCCTCAACCATCAGGTAAGGCGCATTCAAGCACGCAACATAAAGGGTCATTAGCTGGACAAGATTGGACTATAGAGAAAGAATCAGTACAAGATATGACGAAGGAATCTTTTACAGTGCTCCATCAAACCTCTAGGACGGTTGTTATTCATGAGGTATATACCTCCACTTTGTGGGAGACAAATCATATGGAGCCATTGGATCATAATCAGTTGAGTTTAGATGACCTAGAGGTAATCAAAGTGATCGGAAAAGGTAGTAGTGGAGTGGTGCACTTGGTTCGTGACGGACAGACTGGCCATTTTTTTGTTCTAAAGGAGAGCATACGCAAACAGATTGCCCAGGAGTTGAAAATTAGCTTGTCAACACAGTGCCAGTATGTTGTTGCATGTTATCAGTGTTTTTATGCCAACGGTATTATTTCAGCTGTTTTCGAGTACATGGACTGCGGGTCTCTCTCAGATTTACTGAAGACAGTTATAACAATTCCAGAGCCCTACCTTGCTGCAATCTGCAAGCAGGCAAGTTACATGTGGTAG
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| Protein seq | MEFEGLLQPLGISYRVSLYTDDVVTFIRPTVEEIRAAMEVLSIFGEASGLRTNFAKCSTLPIQCNEADLQILQDEQPCQVASFPCTYLGLLLSIFRLKKEDLQPLIDKIGRRLPLWMSHLMTSIGRATMVNAVLSSIPIYLLMAINAPKWVIKGIDKIRRGFLWAGKALLRKLCILKVSVRELLVSDIYILTELPSLRALSLRVQTAPEGKIIFSEGALPVLRYFRFECGVLCLEFRPGAMPNLQRLKLGFNTEQENYVNMLAGIEYLSNLQHIAARIGPNASVDEFDRRAVDSAFKKAITKHPRCPSFNVQWVASSKEEWHPSEKQQQSQEKGSSSGEYVTIKTGSAEDTDKNVLTGHRIFPQPSGKAHSSTQHKGSLAGQDWTIEKESVQDMTKESFTVLHQTSRTVVIHEVYTSTLWETNHMEPLDHNQLSLDDLEVIKVIGKGSSGVVHLVRDGQTGHFFVLKESIRKQIAQELKISLSTQCQYVVACYQCFYANGIISAVFEYMDCGSLSDLLKTVITIPEPYLAAICKQASYMW |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g11880 | LOC_Os11g11880.1 | Chr11 | 6591185 | 6595164 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGTTTGAAGGGTTGTTGCAGCCTTTGGGGATCTCGTACCGGGTCTCACTCTACACGGACGATGTGGTCACCTTCATTCGGCCGACGGTGGAGGAGATTCGTGCTGCGATGGAGGTGCTCTCCATCTTCGGGGAAGCATCCGGTCTTCGAACGAACTTTGCTAAGTGTTCGACACTTCCAATTCAATGCAATGAGGCGGACCTCCAAATCCTTCAAGATGAACAGCCTTGCCAGGTCGCTTCCTTCCCTTGCACATACCTGGGGTTGCTTCTCTCCATCTTCCGCCTAAAGAAAGAGGACTTGCAACCGCTAATTGACAAAATCGGTCGTCGTCTTCCGCTTTGGATGTCGCACTTGATGACGTCCATCGGCCGGGCAACCATGGTGAACGCTGTTTTGAGCTCAATCCCAATTTATTTGTTAATGGCGATCAATGCACCGAAATGGGTAATCAAGGGGATCGACAAAATCCGTCGCGGTTTTTTGTGGGCCGGGAAAGCTTTGCTCCGCAAACTCTGCATTTTGAAAGTTTCTGTTAGAGAACTTCTGGTAAGTGATATTTACATCCTCACAGAATTACCTTCCCTCAGAGCTCTCTCACTTCGTGTCCAGACAGCTCCTGAGGGAAAGATCATCTTCAGTGAGGGAGCACTACCAGTTCTCAGGTATTTTAGATTTGAATGTGGTGTTCTCTGCCTGGAGTTCAGACCTGGAGCAATGCCCAATCTTCAGAGACTCAAGCTAGGCTTCAATACTGAACAGGAGAATTATGTCAATATGCTTGCTGGAATTGAGTACCTTTCAAACCTCCAGCATATTGCTGCACGAATTGGGCCAAATGCCAGTGTTGATGAATTTGATAGGAGGGCTGTGGATTCAGCATTCAAGAAAGCTATCACCAAGCACCCAAGGTGTCCTAGCTTCAATGTACAATGGGTGGCTTCGAGTAAGGAAGAGTGGCATCCTTCAGAGAAACAGCAGCAGAGTCAAGAAAAAGGCTCATCATCTGGAGAATATGTGACTATCAAAACAGGATCAGCAGAAGATACTGATAAGAACGTTCTTACCGGGCATAGAATCTTTCCTCAACCATCAGGTAAGGCGCATTCAAGCACGCAACATAAAGGGTCATTAGCTGGACAAGATTGGACTATAGAGAAAGAATCAGTACAAGATATGACGAAGGAATCTTTTACAGTGCTCCATCAAACCTCTAGGACGGTTGTTATTCATGAGGTATATACCTCCACTTTGTGGGAGACAAATCATATGGAGCCATTGGATCATAATCAGTTGAGTTTAGATGACCTAGAGGTAATCAAAGTGATCGGAAAAGGTAGTAGTGGAGTGGTGCACTTGGTTCGTGACGGACAGACTGGCCATTTTTTTGTTCTAAAGGAGAGCATACGCAAACAGATTGCCCAGGAGTTGAAAATTAGCTTGTCAACACAGTGCCAGTATGTTGTTGCATGTTATCAGTGTTTTTATGCCAACGGTATTATTTCAGCTGTTTTCGAGTACATGGACTGCGGGTCTCTCTCAGATTTACTGAAGACAGTTATAACAATTCCAGAGCCCTACCTTGCTGCAATCTGCAAGCAGGCAAGTTACATGTGGTAG
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| Protein seq | MEFEGLLQPLGISYRVSLYTDDVVTFIRPTVEEIRAAMEVLSIFGEASGLRTNFAKCSTLPIQCNEADLQILQDEQPCQVASFPCTYLGLLLSIFRLKKEDLQPLIDKIGRRLPLWMSHLMTSIGRATMVNAVLSSIPIYLLMAINAPKWVIKGIDKIRRGFLWAGKALLRKLCILKVSVRELLVSDIYILTELPSLRALSLRVQTAPEGKIIFSEGALPVLRYFRFECGVLCLEFRPGAMPNLQRLKLGFNTEQENYVNMLAGIEYLSNLQHIAARIGPNASVDEFDRRAVDSAFKKAITKHPRCPSFNVQWVASSKEEWHPSEKQQQSQEKGSSSGEYVTIKTGSAEDTDKNVLTGHRIFPQPSGKAHSSTQHKGSLAGQDWTIEKESVQDMTKESFTVLHQTSRTVVIHEVYTSTLWETNHMEPLDHNQLSLDDLEVIKVIGKGSSGVVHLVRDGQTGHFFVLKESIRKQIAQELKISLSTQCQYVVACYQCFYANGIISAVFEYMDCGSLSDLLKTVITIPEPYLAAICKQASYMW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0226100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11920 | SBH | 0.630975 | 0.327055 | 0.361226 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0226100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007980 | SBH | 0.488314 | 18.531998 | 5.753318 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007990 | SBH | 0.460925 | 4.499553 | 2.513865 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007860 | SBH | 1.258987 | 7.152298 | 7.234213 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007750 | SBH | 0.266105 | 0.292467 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007770 | SBH | 22.293795 | 17.082457 | 21.002594 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0060800 | SBH | 0 | 0 | 0.13928 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007760 | SBH | 1.028826 | 0.606468 | 2.400014 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0111000 | SBH | 11.163192 | 12.880398 | 7.240871 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007930 | SBH | 0.395772 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007830 | SBH | 15.697803 | 27.759771 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007850 | SBH | 0.619932 | 0.0 | 1.388970 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007950 | SBH | 0.274147 | 8.383874 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007940 | SBH | 0.421739 | 2.155976 | 1.788703 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007760 | SBH | 0.436219 | 25.846172 | 2.030954 |
