Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0007760 | OGI:11019720 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:6597393-6602288 | ||||||||
| Gene Symbol | Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5 | ||||||||||
| DNA seq | GAATCATAATGTAGAGAGAGTGATGAGTTCTTCTTCCCTTGGCGCCATGGATGCTCCGGCGAGCTTTTCCCTAGGTGCCATGGGCCCTCTCCTCAGGAAGCTCGATTCGCTTCTGGTGGCTCCCGAAATCCGGCTGCCTAAGCCATTGAAGGAGGGAATCGAGCTGCTCAAGGAAGATCTAGAAGAGATAGGCGTCTCCCTGGTGGAGCACTCCGTGGTCGATTCACCAACCCACAAGGCAAGATTCTGGATGGATGAGGTGCGTGACCTCTCCTACCACATCGAGGACTGCATCGACACCATGTTTTCGATGCGCTCCGGCGGCGACGACGGCAAGCCCAGATCCGAGCGCCGCCACAAGGTTGGCCGTGCGAAGATCGACGGTTTCTCCAAGAAGCCCAAGCCGTGCACAAGGATGGCTAGGATCGCGGAGCTCAGGGCTCTGGTGCGGGAGGCGAGCGAGCGGCTCGAAAGGTACCAGCTTGGTGACGTCTGCGGCTCGAGCTCTCCCGTTGTGTTCACCGCGGATGGTCGGGCTCGACCTCTCCACCATGGGGTTTCTGCTAATCTTGTTGGCGTCGATGAGTTCAAGACGAAGCTGAACAGGTGGCTCAGCGACGAGGAGGGGCCGCACCTGAAGGTTGCTGCCATTGTTGGACCTGCAGGGATTGGTAAGACGGCACTTGCTACAGAGTTGTACCGTGACCATAGATGGCAATTCGAGTGCCGAGCTTTCGTCCGGGCGTCGCGAAAGCCTGACATGCAGCGGCTTCTTGGGGGTATTCTCTCTCAAGTTCAGCGTCGCCAACGATCGTCTGATGCCTACGCTGACAGCACGGTGCAGAGCCTCATTGATAATCTCCGGGAGCATCTCCAAGATAGGAGGTATTTCTTTGCCACACAAGTATGCTGCTTCTGCACGCACTTATAATCGTTCTTTTTCACCAAAGCACGCAATAAATCATCAGTAGCATGTTAAAAGGAGATTTGTGTAAGGCAACTTATTTCTCGAGTACTGGTAGATATACAGCACCAGACAACTTAGTTTGTTAATGACAACATTGAGTCATTGACCGTGATTTTTATTTGTGTGAATGAAACAAGCAATTATTAAATGAAAACTCCTCCAATGACACAACTAGTGGATTATCCTGCGCAATTTTGCGCAGAGCTAGATAATTAAAATAGAATTAGATTCATTTGATACGCAGTTCTTAAATTCTATCTTCTGTAGGTACAATTGTATTTTCTACATAATAGATTTAAAAGGTAGAATTGGATTTCATTTACAACTCTTATTTATGTTTCTATTCATACAATTGTATTTTCTATACAACCATATCGATCAATCTACACCGTTATAATATGGGCTCGATATGATCTAACGGTTCAAATCTTTTTCTTGTTCTCCGATTAATGTGGGAATTTCTGGCCTAGCTTCCACAACAAATGTAGTAATGTAGTGGGTTCTTTTCGAGCTATCTTTAAAATAATAATATAGTAGGTAGATAGATTTCAGTATCTAATTCTTTTAACAATTGGAGAGTAAAACACAATAGCCTCTTAATGAATATTGCATGTCTGTAACTGATGATGGAATAGTCATGTGCTTTGGCTTGCAGTTTACTTTTATAGTATTCCTTTTTATGCTTGCTACTTCTTTTAGAATAGCATCATAAAAGTAACTATATATGAAATAATTTTCAGGTACCTTATTATAATTGATGGTTTGTGGGAGACGGCAGTATGGAATATTGCTAACAGTGCTTTTCCAGATGTTAACAGTTTCAGTAGAATATTAATAACTGCGGATATCGAACAGGTAGCTCTGGAATGCTGCGGTTACAAGTATGATTATATTATGAGGATGGAACCTCTTGGCAGCCTTGATTCCAAAAAAGTTTTCTTCAATAAAGTTTTTGGCTCCGAAGATCAATGTCCTCCTGAGTTGAAGGAGGTGTCAAACACAATCCTAGAAAAATGTGGTGGTTTGCCACTTGCAATCATCAGCATAGCAGGTCTTCTAGGAAGCCAACCGGAAAATCCAGTGCTATGGGACTATGTAACGAAATATCTATGTTCCAGTTTGGGTACAAATCCTACTTTGAAAGACATGGTGAAAGAAACGCTAAACCTTAGCTACAACAGTCTTCCTCATCCGTTCAAAACATGTCTGCTATATCTTGGTATGTATCCTGATGGGCACATAATGTTGAAGGCTGATTTGATGAAGCAATGGTCAGCTGAAGGTTTTGTCTCTGCCAATGAAGCAAAAGACACAGAAGAAATTGTAGATAAATACTTTGATGAGCTTGTCAACAGGGGAATTCTAGAACCTGTTGAGATTAACAAGAATGGCAAGGTGTTGTCCTGTACCCTGCACCACGCTGTACATGACCTTGTCATGCCCAAATTCAACGATGACAAATTTACTATGTCAGTAGATTACTCTCAGACTATTACAGGACCTTCTACCATGGTTCGTCGTTTGTCCCTTCATTTCAGCAGTACCAGATACGCGACAAAACCTGCAGGAATAATATTGTCACGAGTTCGATCACTTGCCTTTTTTGGCCTCCTCAATTGTATGCCTTGTATTGGGGAATTTAAGTTACTGCGAGTTCTAATCCTAGAATTTTGGGGCAGTCATGGTGAGCAAAGGAGTTTAAACCTAATACCAGTATGTAGATTATTTCAGCTGAGATATTTGAAAACTTCAGGTGATGTAGTTGTTCAGTTACCAGCTCAGATAAGTGGGCTACAGTACTTGGAAACACTGGAAATAGACGCAAGAGTGTCAGCTGTTCCATTTGATCTTGTTCATCTCCCGAACCTACTGCATCTCCAACTTCAAGATGAGACAAAATTACCTGATGGGATTGGCTGCATGAGATCTTTGCGTACACTACAGTACTTTGACCTTGGTAACAACTCTGTAGACAACTTACGGGGTCTTGGAGAGCTGACAAACCTGCAGGATCTTCATCTCAGCTATTCTGCACCGTCATCTAATGAGGGTTTGATGATAAATCTGAATGCTATAACCTCTTCACTTAGCAGACTTAGTAACCTCAAATCTCTGATTCTATCACCAGGTGCTATAAGCATGGTTATTTTCTTTGATATATCAAGCATCATATCTGTGGTTCCTGTATTTCTTCAGAGACTTGAGCTGTTGCCACCCATCTGCATCTTTTGCAGACTTCCCAAGTCGATTGGACAACTTCACAAACTCTGCATTTTGAAAGTTTCCGTTAGAGAACTTCTGACAACTGATATTGATAACCTCACAGGATTACCTTCCCTCACAGTTCTCTCATTATATGCTCAGACAGCTCCAGAGGGAAGGTTTATCTTCAAAGACGGGACTCTCCCAGTTCTCAAGTATTTCAAATTTGGATGTGGTGAACTCTGCCTTGCTTTTATGGCTGGAGCAATGCCCAATCTCCAGAGGCTCAAATTAGTTTTCAACATCCGTAAAAGTGAGAAGTACCGCCATACGCTTTTTGGGATTGAGCACCTTGTAAGCCTCCAGGATATTGCCACACGAATTGGGGTTGACACCAGCACCGGCGAATCTGATAGAAGGGCTGCAGAGTCAGCATTCAAGGAAACTGTCAACAAGCATCCAAGGTGTCTTAGGTCCAGCTTGCAGTGGGTGGTTTCCACTGAGGAAGAAAGTCATCCTTTGGAGAAACAACATCATAAGAGAGAAAAAGGCTCATCAGCTGGACATGGGGTTTTAGAGAAAGAATCAGTGGAAGATAGCGAGAAGAACACTGATAGAGTGCAAACATTATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAAGTGCATTAACGGGGCAACGAACTAAGGTGAGTTCCTCAAGCTGAGCCGAAAATTGATCTTTATCATTTTTTGAAGGACAAACAAGACTAGACCCTAGTAGATAGGAAATGACGCAAATAACTGTAAGGTTACAGTACAAATTAAAGTTGGATTTGCAATCGTACTTCCACTTTTAAGGTTTGTTGTAAGTACCTTTCTTCATTGAATCGGTATCTCTTAAATAACATCTCTTTAAGATGGGAGAAAACCTTCAGTACATGTACACTCATAAAGTCTTAATTCATTTAGAAAATTGAACATGGACATGAATAAAGCATGCTTGTCCCTTTGGTAAACATATGTTGATGAGTTCTTTAGCAATCTGATGTCCTATTTTGAATCTTAATAATGACTAATATATTGTTTTGCTTGTTGATGCAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGTTGCGTCAGTGAACGGTAAATCTGCGCAAATATATTCTTCCGGTTGTGCAGTCCTGATCAGTACTCCTACTATTTTATGCCTTTATGCTTGCAGGGGTGGAGAGCATGCAGAGCATGCAGATAACGGGGGAGGACAAAGACCGGCTGGAGGTGGTCGGCCGTGGCATTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTAGAGTATCCACCTTCAGCACCAATAATGCAAGATATTGACCGTTGCTCAACCATGTGAATTCTATGTGATATTACGTGTTTCTCTGTGTGATGAATAATTAGCTACATTAGCTGAAGTTTCTGAGTGTCAGTGGTTTACCCTTAAGTTGACTGGCACCATTAGTGGGATGGTAGTCATCGGTGCAGGATTTCATCCATCAGTGTTCCAGTTCCAATGTCTATATTTAAAATATAGCTATGTTCATCCTTAACT
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| CDS seq | ATGAGTTCTTCTTCCCTTGGCGCCATGGATGCTCCGGCGAGCTTTTCCCTAGGTGCCATGGGCCCTCTCCTCAGGAAGCTCGATTCGCTTCTGGTGGCTCCCGAAATCCGGCTGCCTAAGCCATTGAAGGAGGGAATCGAGCTGCTCAAGGAAGATCTAGAAGAGATAGGCGTCTCCCTGGTGGAGCACTCCGTGGTCGATTCACCAACCCACAAGGCAAGATTCTGGATGGATGAGGTGCGTGACCTCTCCTACCACATCGAGGACTGCATCGACACCATGTTTTCGATGCGCTCCGGCGGCGACGACGGCAAGCCCAGATCCGAGCGCCGCCACAAGGTTGGCCGTGCGAAGATCGACGGTTTCTCCAAGAAGCCCAAGCCGTGCACAAGGATGGCTAGGATCGCGGAGCTCAGGGCTCTGGTGCGGGAGGCGAGCGAGCGGCTCGAAAGGTACCAGCTTGGTGACGTCTGCGGCTCGAGCTCTCCCGTTGTGTTCACCGCGGATGGTCGGGCTCGACCTCTCCACCATGGGGTTTCTGCTAATCTTGTTGGCGTCGATGAGTTCAAGACGAAGCTGAACAGGTGGCTCAGCGACGAGGAGGGGCCGCACCTGAAGGTTGCTGCCATTGTTGGACCTGCAGGGATTGGTAAGACGGCACTTGCTACAGAGTTGTACCGTGACCATAGATGGCAATTCGAGTGCCGAGCTTTCGTCCGGGCGTCGCGAAAGCCTGACATGCAGCGGCTTCTTGGGGGTATTCTCTCTCAAGTTCAGCGTCGCCAACGATCGTCTGATGCCTACGCTGACAGCACGGTGCAGAGCCTCATTGATAATCTCCGGGAGCATCTCCAAGATAGGAGGTACCTTATTATAATTGATGGTTTGTGGGAGACGGCAGTATGGAATATTGCTAACAGTGCTTTTCCAGATGTTAACAGTTTCAGTAGAATATTAATAACTGCGGATATCGAACAGGTAGCTCTGGAATGCTGCGGTTACAAGTATGATTATATTATGAGGATGGAACCTCTTGGCAGCCTTGATTCCAAAAAAGTTTTCTTCAATAAAGTTTTTGGCTCCGAAGATCAATGTCCTCCTGAGTTGAAGGAGGTGTCAAACACAATCCTAGAAAAATGTGGTGGTTTGCCACTTGCAATCATCAGCATAGCAGGTCTTCTAGGAAGCCAACCGGAAAATCCAGTGCTATGGGACTATGTAACGAAATATCTATGTTCCAGTTTGGGTACAAATCCTACTTTGAAAGACATGGTGAAAGAAACGCTAAACCTTAGCTACAACAGTCTTCCTCATCCGTTCAAAACATGTCTGCTATATCTTGGTATGTATCCTGATGGGCACATAATGTTGAAGGCTGATTTGATGAAGCAATGGTCAGCTGAAGGTTTTGTCTCTGCCAATGAAGCAAAAGACACAGAAGAAATTGTAGATAAATACTTTGATGAGCTTGTCAACAGGGGAATTCTAGAACCTGTTGAGATTAACAAGAATGGCAAGGTGTTGTCCTGTACCCTGCACCACGCTGTACATGACCTTGTCATGCCCAAATTCAACGATGACAAATTTACTATGTCAGTAGATTACTCTCAGACTATTACAGGACCTTCTACCATGGTTCGTCGTTTGTCCCTTCATTTCAGCAGTACCAGATACGCGACAAAACCTGCAGGAATAATATTGTCACGAGTTCGATCACTTGCCTTTTTTGGCCTCCTCAATTGTATGCCTTGTATTGGGGAATTTAAGTTACTGCGAGTTCTAATCCTAGAATTTTGGGGCAGTCATGGTGAGCAAAGGAGTTTAAACCTAATACCAGTATGTAGATTATTTCAGCTGAGATATTTGAAAACTTCAGGTGATGTAGTTGTTCAGTTACCAGCTCAGATAAGTGGGCTACAGTACTTGGAAACACTGGAAATAGACGCAAGAGTGTCAGCTGTTCCATTTGATCTTGTTCATCTCCCGAACCTACTGCATCTCCAACTTCAAGATGAGACAAAATTACCTGATGGGATTGGCTGCATGAGATCTTTGCGTACACTACAGTACTTTGACCTTGGTAACAACTCTGTAGACAACTTACGGGGTCTTGGAGAGCTGACAAACCTGCAGGATCTTCATCTCAGCTATTCTGCACCGTCATCTAATGAGGGTTTGATGATAAATCTGAATGCTATAACCTCTTCACTTAGCAGACTTAGTAACCTCAAATCTCTGATTCTATCACCAGGTGCTATAAGCATGGTTATTTTCTTTGATATATCAAGCATCATATCTGTGGTTCCTGTATTTCTTCAGAGACTTGAGCTGTTGCCACCCATCTGCATCTTTTGCAGACTTCCCAAGTCGATTGGACAACTTCACAAACTCTGCATTTTGAAAGTTTCCGTTAGAGAACTTCTGACAACTGATATTGATAACCTCACAGGATTACCTTCCCTCACAGTTCTCTCATTATATGCTCAGACAGCTCCAGAGGGAAGGTTTATCTTCAAAGACGGGACTCTCCCAGTTCTCAAGTATTTCAAATTTGGATGTGGTGAACTCTGCCTTGCTTTTATGGCTGGAGCAATGCCCAATCTCCAGAGGCTCAAATTAGTTTTCAACATCCGTAAAAGTGAGAAGTACCGCCATACGCTTTTTGGGATTGAGCACCTTGTAAGCCTCCAGGATATTGCCACACGAATTGGGGTTGACACCAGCACCGGCGAATCTGATAGAAGGGCTGCAGAGTCAGCATTCAAGGAAACTGTCAACAAGCATCCAAGGTGTCTTAGGTCCAGCTTGCAGTGGGTGGTTTCCACTGAGGAAGAAAGTCATCCTTTGGAGAAACAACATCATAAGAGAGAAAAAGGCTCATCAGCTGGACATGGGGTTTTAGAGAAAGAATCAGTGGAAGATAGCGAGAAGAACACTGATAGAGTGCAAACATTATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAAGTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGTTGCGTCAGTGAACGGGGTGGAGAGCATGCAGAGCATGCAGATAACGGGGGAGGACAAAGACCGGCTGGAGGTGGTCGGCCGTGGCATTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTAGAGTATCCACCTTCAGCACCAATAATGCAAGATATTGACCGTTGCTCAACCATGTGA
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| Protein seq | MSSSSLGAMDAPASFSLGAMGPLLRKLDSLLVAPEIRLPKPLKEGIELLKEDLEEIGVSLVEHSVVDSPTHKARFWMDEVRDLSYHIEDCIDTMFSMRSGGDDGKPRSERRHKVGRAKIDGFSKKPKPCTRMARIAELRALVREASERLERYQLGDVCGSSSPVVFTADGRARPLHHGVSANLVGVDEFKTKLNRWLSDEEGPHLKVAAIVGPAGIGKTALATELYRDHRWQFECRAFVRASRKPDMQRLLGGILSQVQRRQRSSDAYADSTVQSLIDNLREHLQDRRYLIIIDGLWETAVWNIANSAFPDVNSFSRILITADIEQVALECCGYKYDYIMRMEPLGSLDSKKVFFNKVFGSEDQCPPELKEVSNTILEKCGGLPLAIISIAGLLGSQPENPVLWDYVTKYLCSSLGTNPTLKDMVKETLNLSYNSLPHPFKTCLLYLGMYPDGHIMLKADLMKQWSAEGFVSANEAKDTEEIVDKYFDELVNRGILEPVEINKNGKVLSCTLHHAVHDLVMPKFNDDKFTMSVDYSQTITGPSTMVRRLSLHFSSTRYATKPAGIILSRVRSLAFFGLLNCMPCIGEFKLLRVLILEFWGSHGEQRSLNLIPVCRLFQLRYLKTSGDVVVQLPAQISGLQYLETLEIDARVSAVPFDLVHLPNLLHLQLQDETKLPDGIGCMRSLRTLQYFDLGNNSVDNLRGLGELTNLQDLHLSYSAPSSNEGLMINLNAITSSLSRLSNLKSLILSPGAISMVIFFDISSIISVVPVFLQRLELLPPICIFCRLPKSIGQLHKLCILKVSVRELLTTDIDNLTGLPSLTVLSLYAQTAPEGRFIFKDGTLPVLKYFKFGCGELCLAFMAGAMPNLQRLKLVFNIRKSEKYRHTLFGIEHLVSLQDIATRIGVDTSTGESDRRAAESAFKETVNKHPRCLRSSLQWVVSTEEESHPLEKQHHKREKGSSAGHGVLEKESVEDSEKNTDRVQTLLSPQLSNMESVVESALTGQRTKIVVKVHMPCGKSRAKAMALVASVNGVESMQSMQITGEDKDRLEVVGRGIDPVRLVALLREKCGLAELLMVELVEKEKTQLAGGKKGAYKKHPTYNLSPFDYVEYPPSAPIMQDIDRCSTM |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0007760 | OsIR64_11g0007760.01 | Chr11 | 6597393 | 6602288 | + | NAM | ||
| CDS seq | ATGAGTTCTTCTTCCCTTGGCGCCATGGATGCTCCGGCGAGCTTTTCCCTAGGTGCCATGGGCCCTCTCCTCAGGAAGCTCGATTCGCTTCTGGTGGCTCCCGAAATCCGGCTGCCTAAGCCATTGAAGGAGGGAATCGAGCTGCTCAAGGAAGATCTAGAAGAGATAGGCGTCTCCCTGGTGGAGCACTCCGTGGTCGATTCACCAACCCACAAGGCAAGATTCTGGATGGATGAGGTGCGTGACCTCTCCTACCACATCGAGGACTGCATCGACACCATGTTTTCGATGCGCTCCGGCGGCGACGACGGCAAGCCCAGATCCGAGCGCCGCCACAAGGTTGGCCGTGCGAAGATCGACGGTTTCTCCAAGAAGCCCAAGCCGTGCACAAGGATGGCTAGGATCGCGGAGCTCAGGGCTCTGGTGCGGGAGGCGAGCGAGCGGCTCGAAAGGTACCAGCTTGGTGACGTCTGCGGCTCGAGCTCTCCCGTTGTGTTCACCGCGGATGGTCGGGCTCGACCTCTCCACCATGGGGTTTCTGCTAATCTTGTTGGCGTCGATGAGTTCAAGACGAAGCTGAACAGGTGGCTCAGCGACGAGGAGGGGCCGCACCTGAAGGTTGCTGCCATTGTTGGACCTGCAGGGATTGGTAAGACGGCACTTGCTACAGAGTTGTACCGTGACCATAGATGGCAATTCGAGTGCCGAGCTTTCGTCCGGGCGTCGCGAAAGCCTGACATGCAGCGGCTTCTTGGGGGTATTCTCTCTCAAGTTCAGCGTCGCCAACGATCGTCTGATGCCTACGCTGACAGCACGGTGCAGAGCCTCATTGATAATCTCCGGGAGCATCTCCAAGATAGGAGGTACCTTATTATAATTGATGGTTTGTGGGAGACGGCAGTATGGAATATTGCTAACAGTGCTTTTCCAGATGTTAACAGTTTCAGTAGAATATTAATAACTGCGGATATCGAACAGGTAGCTCTGGAATGCTGCGGTTACAAGTATGATTATATTATGAGGATGGAACCTCTTGGCAGCCTTGATTCCAAAAAAGTTTTCTTCAATAAAGTTTTTGGCTCCGAAGATCAATGTCCTCCTGAGTTGAAGGAGGTGTCAAACACAATCCTAGAAAAATGTGGTGGTTTGCCACTTGCAATCATCAGCATAGCAGGTCTTCTAGGAAGCCAACCGGAAAATCCAGTGCTATGGGACTATGTAACGAAATATCTATGTTCCAGTTTGGGTACAAATCCTACTTTGAAAGACATGGTGAAAGAAACGCTAAACCTTAGCTACAACAGTCTTCCTCATCCGTTCAAAACATGTCTGCTATATCTTGGTATGTATCCTGATGGGCACATAATGTTGAAGGCTGATTTGATGAAGCAATGGTCAGCTGAAGGTTTTGTCTCTGCCAATGAAGCAAAAGACACAGAAGAAATTGTAGATAAATACTTTGATGAGCTTGTCAACAGGGGAATTCTAGAACCTGTTGAGATTAACAAGAATGGCAAGGTGTTGTCCTGTACCCTGCACCACGCTGTACATGACCTTGTCATGCCCAAATTCAACGATGACAAATTTACTATGTCAGTAGATTACTCTCAGACTATTACAGGACCTTCTACCATGGTTCGTCGTTTGTCCCTTCATTTCAGCAGTACCAGATACGCGACAAAACCTGCAGGAATAATATTGTCACGAGTTCGATCACTTGCCTTTTTTGGCCTCCTCAATTGTATGCCTTGTATTGGGGAATTTAAGTTACTGCGAGTTCTAATCCTAGAATTTTGGGGCAGTCATGGTGAGCAAAGGAGTTTAAACCTAATACCAGTATGTAGATTATTTCAGCTGAGATATTTGAAAACTTCAGGTGATGTAGTTGTTCAGTTACCAGCTCAGATAAGTGGGCTACAGTACTTGGAAACACTGGAAATAGACGCAAGAGTGTCAGCTGTTCCATTTGATCTTGTTCATCTCCCGAACCTACTGCATCTCCAACTTCAAGATGAGACAAAATTACCTGATGGGATTGGCTGCATGAGATCTTTGCGTACACTACAGTACTTTGACCTTGGTAACAACTCTGTAGACAACTTACGGGGTCTTGGAGAGCTGACAAACCTGCAGGATCTTCATCTCAGCTATTCTGCACCGTCATCTAATGAGGGTTTGATGATAAATCTGAATGCTATAACCTCTTCACTTAGCAGACTTAGTAACCTCAAATCTCTGATTCTATCACCAGGTGCTATAAGCATGGTTATTTTCTTTGATATATCAAGCATCATATCTGTGGTTCCTGTATTTCTTCAGAGACTTGAGCTGTTGCCACCCATCTGCATCTTTTGCAGACTTCCCAAGTCGATTGGACAACTTCACAAACTCTGCATTTTGAAAGTTTCCGTTAGAGAACTTCTGACAACTGATATTGATAACCTCACAGGATTACCTTCCCTCACAGTTCTCTCATTATATGCTCAGACAGCTCCAGAGGGAAGGTTTATCTTCAAAGACGGGACTCTCCCAGTTCTCAAGTATTTCAAATTTGGATGTGGTGAACTCTGCCTTGCTTTTATGGCTGGAGCAATGCCCAATCTCCAGAGGCTCAAATTAGTTTTCAACATCCGTAAAAGTGAGAAGTACCGCCATACGCTTTTTGGGATTGAGCACCTTGTAAGCCTCCAGGATATTGCCACACGAATTGGGGTTGACACCAGCACCGGCGAATCTGATAGAAGGGCTGCAGAGTCAGCATTCAAGGAAACTGTCAACAAGCATCCAAGGTGTCTTAGGTCCAGCTTGCAGTGGGTGGTTTCCACTGAGGAAGAAAGTCATCCTTTGGAGAAACAACATCATAAGAGAGAAAAAGGCTCATCAGCTGGACATGGGGTTTTAGAGAAAGAATCAGTGGAAGATAGCGAGAAGAACACTGATAGAGTGCAAACATTATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAAGTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGTTGCGTCAGTGAACGGGGTGGAGAGCATGCAGAGCATGCAGATAACGGGGGAGGACAAAGACCGGCTGGAGGTGGTCGGCCGTGGCATTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTAGAGTATCCACCTTCAGCACCAATAATGCAAGATATTGACCGTTGCTCAACCATGTGA
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| Protein seq | MSSSSLGAMDAPASFSLGAMGPLLRKLDSLLVAPEIRLPKPLKEGIELLKEDLEEIGVSLVEHSVVDSPTHKARFWMDEVRDLSYHIEDCIDTMFSMRSGGDDGKPRSERRHKVGRAKIDGFSKKPKPCTRMARIAELRALVREASERLERYQLGDVCGSSSPVVFTADGRARPLHHGVSANLVGVDEFKTKLNRWLSDEEGPHLKVAAIVGPAGIGKTALATELYRDHRWQFECRAFVRASRKPDMQRLLGGILSQVQRRQRSSDAYADSTVQSLIDNLREHLQDRRYLIIIDGLWETAVWNIANSAFPDVNSFSRILITADIEQVALECCGYKYDYIMRMEPLGSLDSKKVFFNKVFGSEDQCPPELKEVSNTILEKCGGLPLAIISIAGLLGSQPENPVLWDYVTKYLCSSLGTNPTLKDMVKETLNLSYNSLPHPFKTCLLYLGMYPDGHIMLKADLMKQWSAEGFVSANEAKDTEEIVDKYFDELVNRGILEPVEINKNGKVLSCTLHHAVHDLVMPKFNDDKFTMSVDYSQTITGPSTMVRRLSLHFSSTRYATKPAGIILSRVRSLAFFGLLNCMPCIGEFKLLRVLILEFWGSHGEQRSLNLIPVCRLFQLRYLKTSGDVVVQLPAQISGLQYLETLEIDARVSAVPFDLVHLPNLLHLQLQDETKLPDGIGCMRSLRTLQYFDLGNNSVDNLRGLGELTNLQDLHLSYSAPSSNEGLMINLNAITSSLSRLSNLKSLILSPGAISMVIFFDISSIISVVPVFLQRLELLPPICIFCRLPKSIGQLHKLCILKVSVRELLTTDIDNLTGLPSLTVLSLYAQTAPEGRFIFKDGTLPVLKYFKFGCGELCLAFMAGAMPNLQRLKLVFNIRKSEKYRHTLFGIEHLVSLQDIATRIGVDTSTGESDRRAAESAFKETVNKHPRCLRSSLQWVVSTEEESHPLEKQHHKREKGSSAGHGVLEKESVEDSEKNTDRVQTLLSPQLSNMESVVESALTGQRTKIVVKVHMPCGKSRAKAMALVASVNGVESMQSMQITGEDKDRLEVVGRGIDPVRLVALLREKCGLAELLMVELVEKEKTQLAGGKKGAYKKHPTYNLSPFDYVEYPPSAPIMQDIDRCSTM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0007760 | OsIR64_11g0007760.02 | Chr11 | 6597395 | 6602288 | + | NAM | ||
| CDS seq | ATGAGTTCTTCTTCCCTTGGCGCCATGGATGCTCCGGCGAGCTTTTCCCTAGGTGCCATGGGCCCTCTCCTCAGGAAGCTCGATTCGCTTCTGGTGGCTCCCGAAATCCGGCTGCCTAAGCCATTGAAGGAGGGAATCGAGCTGCTCAAGGAAGATCTAGAAGAGATAGGCGTCTCCCTGGTGGAGCACTCCGTGGTCGATTCACCAACCCACAAGGCAAGATTCTGGATGGATGAGGTGCGTGACCTCTCCTACCACATCGAGGACTGCATCGACACCATGTTTTCGATGCGCTCCGGCGGCGACGACGGCAAGCCCAGATCCGAGCGCCGCCACAAGGTTGGCCGTGCGAAGATCGACGGTTTCTCCAAGAAGCCCAAGCCGTGCACAAGGATGGCTAGGATCGCGGAGCTCAGGGCTCTGGTGCGGGAGGCGAGCGAGCGGCTCGAAAGGTACCAGCTTGGTGACGTCTGCGGCTCGAGCTCTCCCGTTGTGTTCACCGCGGATGGTCGGGCTCGACCTCTCCACCATGGGGTTTCTGCTAATCTTGTTGGCGTCGATGAGTTCAAGACGAAGCTGAACAGGTGGCTCAGCGACGAGGAGGGGCCGCACCTGAAGGTTGCTGCCATTGTTGGACCTGCAGGGATTGGTAAGACGGCACTTGCTACAGAGTTGTACCGTGACCATAGATGGCAATTCGAGTGCCGAGCTTTCGTCCGGGCGTCGCGAAAGCCTGACATGCAGCGGCTTCTTGGGGGTATTCTCTCTCAAGTTCAGCGTCGCCAACGATCGTCTGATGCCTACGCTGACAGCACGGTGCAGAGCCTCATTGATAATCTCCGGGAGCATCTCCAAGATAGGAGGTACCTTATTATAATTGATGGTTTGTGGGAGACGGCAGTATGGAATATTGCTAACAGTGCTTTTCCAGATGTTAACAGTTTCAGTAGAATATTAATAACTGCGGATATCGAACAGGTAGCTCTGGAATGCTGCGGTTACAAGTATGATTATATTATGAGGATGGAACCTCTTGGCAGCCTTGATTCCAAAAAAGTTTTCTTCAATAAAGTTTTTGGCTCCGAAGATCAATGTCCTCCTGAGTTGAAGGAGGTGTCAAACACAATCCTAGAAAAATGTGGTGGTTTGCCACTTGCAATCATCAGCATAGCAGGTCTTCTAGGAAGCCAACCGGAAAATCCAGTGCTATGGGACTATGTAACGAAATATCTATGTTCCAGTTTGGGTACAAATCCTACTTTGAAAGACATGGTGAAAGAAACGCTAAACCTTAGCTACAACAGTCTTCCTCATCCGTTCAAAACATGTCTGCTATATCTTGGTATGTATCCTGATGGGCACATAATGTTGAAGGCTGATTTGATGAAGCAATGGTCAGCTGAAGGTTTTGTCTCTGCCAATGAAGCAAAAGACACAGAAGAAATTGTAGATAAATACTTTGATGAGCTTGTCAACAGGGGAATTCTAGAACCTGTTGAGATTAACAAGAATGGCAAGGTGTTGTCCTGTACCCTGCACCACGCTGTACATGACCTTGTCATGCCCAAATTCAACGATGACAAATTTACTATGTCAGTAGATTACTCTCAGACTATTACAGGACCTTCTACCATGGTTCGTCGTTTGTCCCTTCATTTCAGCAGTACCAGATACGCGACAAAACCTGCAGGAATAATATTGTCACGAGTTCGATCACTTGCCTTTTTTGGCCTCCTCAATTGTATGCCTTGTATTGGGGAATTTAAGTTACTGCGAGTTCTAATCCTAGAATTTTGGGGCAGTCATGGTGAGCAAAGGAGTTTAAACCTAATACCAGTATGTAGATTATTTCAGCTGAGATATTTGAAAACTTCAGGTGATGTAGTTGTTCAGTTACCAGCTCAGATAAGTGGGCTACAGTACTTGGAAACACTGGAAATAGACGCAAGAGTGTCAGCTGTTCCATTTGATCTTGTTCATCTCCCGAACCTACTGCATCTCCAACTTCAAGATGAGACAAAATTACCTGATGGGATTGGCTGCATGAGATCTTTGCGTACACTACAGTACTTTGACCTTGGTAACAACTCTGTAGACAACTTACGGGGTCTTGGAGAGCTGACAAACCTGCAGGATCTTCATCTCAGCTATTCTGCACCGTCATCTAATGAGGGTTTGATGATAAATCTGAATGCTATAACCTCTTCACTTAGCAGACTTAGTAACCTCAAATCTCTGATTCTATCACCAGGTGCTATAAGCATGGTTATTTTCTTTGATATATCAAGCATCATATCTGTGGTTCCTGTATTTCTTCAGAGACTTGAGCTGTTGCCACCCATCTGCATCTTTTGCAGACTTCCCAAGTCGATTGGACAACTTCACAAACTCTGCATTTTGAAAGTTTCCGTTAGAGAACTTCTGACAACTGATATTGATAACCTCACAGGATTACCTTCCCTCACAGTTCTCTCATTATATGCTCAGACAGCTCCAGAGGGAAGGTTTATCTTCAAAGACGGGACTCTCCCAGTTCTCAAGTATTTCAAATTTGGATGTGGTGAACTCTGCCTTGCTTTTATGGCTGGAGCAATGCCCAATCTCCAGAGGCTCAAATTAGTTTTCAACATCCGTAAAAGTGAGAAGTACCGCCATACGCTTTTTGGGATTGAGCACCTTGTAAGCCTCCAGGATATTGCCACACGAATTGGGGTTGACACCAGCACCGGCGAATCTGATAGAAGGGCTGCAGAGTCAGCATTCAAGGAAACTGTCAACAAGCATCCAAGGTGTCTTAGGTCCAGCTTGCAGTGGGTGGTTTCCACTGAGGAAGAAAGTCATCCTTTGGAGAAACAACATCATAAGAGAGAAAAAGGCTCATCAGCTGGACATGGGGTTTTAGAGAAAGAATCAGTGGAAGATAGCGAGAAGAACACTGATAGAGTGCAAACATTATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAAGTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGTTGCGTCAGTGAACGGTAAATCTGCGCAAATATATTCTTCCGGTTGTGCAGTCCTGATCAGTACTCCTACTATTTTATGCCTTTATGCTTGCAGGGGTGGAGAGCATGCAGAGCATGCAGATAACGGGGGAGGACAAAGACCGGCTGGAGGTGGTCGGCCGTGGCATTGA
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| Protein seq | MSSSSLGAMDAPASFSLGAMGPLLRKLDSLLVAPEIRLPKPLKEGIELLKEDLEEIGVSLVEHSVVDSPTHKARFWMDEVRDLSYHIEDCIDTMFSMRSGGDDGKPRSERRHKVGRAKIDGFSKKPKPCTRMARIAELRALVREASERLERYQLGDVCGSSSPVVFTADGRARPLHHGVSANLVGVDEFKTKLNRWLSDEEGPHLKVAAIVGPAGIGKTALATELYRDHRWQFECRAFVRASRKPDMQRLLGGILSQVQRRQRSSDAYADSTVQSLIDNLREHLQDRRYLIIIDGLWETAVWNIANSAFPDVNSFSRILITADIEQVALECCGYKYDYIMRMEPLGSLDSKKVFFNKVFGSEDQCPPELKEVSNTILEKCGGLPLAIISIAGLLGSQPENPVLWDYVTKYLCSSLGTNPTLKDMVKETLNLSYNSLPHPFKTCLLYLGMYPDGHIMLKADLMKQWSAEGFVSANEAKDTEEIVDKYFDELVNRGILEPVEINKNGKVLSCTLHHAVHDLVMPKFNDDKFTMSVDYSQTITGPSTMVRRLSLHFSSTRYATKPAGIILSRVRSLAFFGLLNCMPCIGEFKLLRVLILEFWGSHGEQRSLNLIPVCRLFQLRYLKTSGDVVVQLPAQISGLQYLETLEIDARVSAVPFDLVHLPNLLHLQLQDETKLPDGIGCMRSLRTLQYFDLGNNSVDNLRGLGELTNLQDLHLSYSAPSSNEGLMINLNAITSSLSRLSNLKSLILSPGAISMVIFFDISSIISVVPVFLQRLELLPPICIFCRLPKSIGQLHKLCILKVSVRELLTTDIDNLTGLPSLTVLSLYAQTAPEGRFIFKDGTLPVLKYFKFGCGELCLAFMAGAMPNLQRLKLVFNIRKSEKYRHTLFGIEHLVSLQDIATRIGVDTSTGESDRRAAESAFKETVNKHPRCLRSSLQWVVSTEEESHPLEKQHHKREKGSSAGHGVLEKESVEDSEKNTDRVQTLLSPQLSNMESVVESALTGQRTKIVVKVHMPCGKSRAKAMALVASVNGKSAQIYSSGCAVLISTPTILCLYACRGGEHAEHADNGGGQRPAGGGRPWH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr11 | 6601652 | 6602288 | + | OsIR64_11g0007760.02 | OsIR64_11g0007760.01,OsIR64_11g0007760.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.028826 | 0.606468 | 2.400014 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0225300 | RBH | 2.019053 | 1.250956 | 4.432347 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11810 | RBH | 0.704885 | 0.507252 | 0.672848 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0225300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007970 | RBH | 0.462562 | 5.735374 | 2.408226 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007980 | RBH | 0.297682 | 4.919609 | 1.817719 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007850 | RBH | 0.666380 | 3.643716 | 4.156754 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007750 | RBH | 0.266105 | 0.292467 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007770 | RBH | 22.293795 | 17.082457 | 21.002594 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0104800 | RBH | 9.8728925 | 17.3811525 | 9.2154185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007840 | SBH | 0.502440 | 0.434221 | 1.512577 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0111000 | RBH | 11.163192 | 12.880398 | 7.240871 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007930 | RBH | 0.395772 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007860 | RBH | 0.322153 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007830 | RBH | 15.697803 | 27.759771 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007850 | RBH | 0.619932 | 0.0 | 1.388970 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007890 | RBH | 1.034561 | 7.104585 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007940 | RBH | 0.421739 | 2.155976 | 1.788703 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007750 | RBH | 0.327408 | 12.925796 | 3.389852 |
