Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g10300 | OGI:11016710 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:5590632-5592453 | ||||||||
| Gene Symbol | OsFbox590, Os_F0068, Fbox-6 | ||||||||||
| DNA seq | TCAGAAATACTGGAAGAATGAAAAAATGTCAACAGTAAGCTTACGTTTTGGTTGTTGTTTCCTCTGCTTGATAATAACTTTTTTGTCCAATGTACTCAACCACTTCCCAATTTTGTAAACCCCCTCATCAACTTCTTTACAGTGGACTTTCACTACCTTAAGGTGTTCTGATATTGCAGCTGGTTTCCACAATGGATTGTCATTCTCTTCTGTTTCCAATTCCACCATAGATTTATATTCCTGTAGCAGGGAAATAAATTTCACCTTCAATTAATCATGCACAACAACTTTAACAATGCAGCAGTTGTAAAAACATATACCTTGGAAATTTTAAGAGTGAGCTTCCGTAGAACTGGTGAGTGTTCAAGAATACAAGCTAGTGCCGAGAAATTAGAAGCAAGACACCACTCATTGAGTAACAAACACTTCATCTTGCTAAACAAAGGGCACCATCTTAAATCACTTCTGAAAATAAACTGGATAAAGTGCAAGCGAGAAAGTCAACCGAATTTTGTTGTGAATACAATAATTTAAGAGCCAAGACATAGTAATGCATGAAACATATTCTTAAGAAGTTAAAATGGTGAATCAGATACAGGAAATAACATAAATTAAGGAGATATCTGATAAGATGTTAACGTAAGCTTACTATGTTAGGTCCAGCTATCAACTTCAAATTCTCAGCTTCTGTTAGACCTCCTAGGAGCACGCTTTCAGAATCGTCGCTAACCTCATATCTACAATGACAGCCATCACAGTATTCATCTTCACAATTACCAGAGTAACTATTACTGCACGAGTCATCGCAATCCTGGTGGGGTCTGACAGATGCTTCAACTAATGAGGGCATTCTTCCGAGAAAAGGAGTTCTGCCACAAAAACCTTCAAGTAAGAGCGTAACGAGGCTCGGTGCATAAATGTCCGTGCGGTGATACTCACCGAATTGACAATGGAAGATATGAAGACATTGTATCGACCGGGACAAAATCTCGTAAACGGAATCAAAGCCGCAATTCTTGGTGAAATATAGCTCCTTCAGCGCAGGACAGCTCGAGAAGTTAAGGAAGCAATTCTTCAACTCTATACCAGAGAGTTCTATCTTGGTCAAGTGTGGCGAGACAAGAGGCATGCCCTTGTACACTTCAATGTCTATCTGATCGAGGTTATGGATCTTGAGCACCTGAACTCGGCACATTACGGCATACATGACCCACAGCATGACGCATTGGTATGGATCACTGCCGCCATCATGCACCACGTCCTCGTATCGGCGTGCATTGAACCTCAAATCAAGCTCGCGCAAAGGCGAGATGCCACGGAGGAGCACCAGATGGTTGACGAACTTCTTGAACTCGTCGGAGCTCTTCCATCTATCAGTACTGTAAGCGACGCGCAGGATGTCCGTGGATTTCCAGAGGTGGCGCCATCGCCGGGACAGGACGCAGGTCTTCACGGCCTCGTCGGCGGACAGCAGGGACAGGATCTGCTGGAGGAGCTCGTCGGGGAGGTCGTCGATCCCGCACTCTTCGCTGGGAGACATTCCGTCGAACAGGTGGCGGGCGTAGCCGGGGCACTGTGCTACGCAAAGACACGAAGAGATCGGATGATCCCCCGGCTTCACCAGGCGCTGTGTCGCCGCTTCGACTTCGCGGCGGTCCTCTGCGCGGCGCGGGGCGGCGCTAGAACGAAGCGCCTCGACGGGGCTCTTCTGAGGAGGCGTCGCCGGCGGTGGAGTCGGAAGCCGGGGCGCCGCGTCCTCTAGAAGTCCAGCCCTTATAGGATAGACTGGTAATATATTATAAAAAGGTAATAGAAACTCCAT
More
|
||||||||||
| CDS seq | ATGGAGTTTCTATTACCTTTTTATAATATATTACCAGTCTATCCTATAAGGGCTGGACTTCTAGAGGACGCGGCGCCCCGGCTTCCGACTCCACCGCCGGCGACGCCTCCTCAGAAGAGCCCCGTCGAGGCGCTTCGTTCTAGCGCCGCCCCGCGCCGCGCAGAGGACCGCCGCGAAGTCGAAGCGGCGACACAGCGCCTGGTGAAGCCGGGGGATCATCCGATCTCTTCGTGTCTTTGCGTAGCACAGTGCCCCGGCTACGCCCGCCACCTGTTCGACGGAATGTCTCCCAGCGAAGAGTGCGGGATCGACGACCTCCCCGACGAGCTCCTCCAGCAGATCCTGTCCCTGCTGTCCGCCGACGAGGCCGTGAAGACCTGCGTCCTGTCCCGGCGATGGCGCCACCTCTGGAAATCCACGGACATCCTGCGCGTCGCTTACAGTACTGATAGATGGAAGAGCTCCGACGAGTTCAAGAAGTTCGTCAACCATCTGGTGCTCCTCCGTGGCATCTCGCCTTTGCGCGAGCTTGATTTGAGGTTCAATGCACGCCGATACGAGGACGTGGTGCATGATGGCGGCAGTGATCCATACCAATGCGTCATGCTGTGGGTCATGTATGCCGTAATGTGCCGAGTTCAGGTGCTCAAGATCCATAACCTCGATCAGATAGACATTGAAGTGTACAAGGGCATGCCTCTTGTCTCGCCACACTTGACCAAGATAGAACTCTCTGGTATAGAGTTGAAGAATTGCTTCCTTAACTTCTCGAGCTGTCCTGCGCTGAAGGAGCTATATTTCACCAAGAATTGCGGCTTTGATTCCGTTTACGAGATTTTGTCCCGGTCGATACAATGTCTTCATATCTTCCATTGTCAATTCGATGAATACTGTGATGGCTGTCATTGTAGATATGAGGTTAGCGACGATTCTGAAAGCGTGCTCCTAGGAGGTCTAACAGAAGCTGAGAATTTGAAGTTGATAGCTGGACCTAACATAGAATATAAATCTATGGTGGAATTGGAAACAGAAGAGAATGACAATCCATTGTGGAAACCAGCTGCAATATCAGAACACCTTAAGGTAGTGAAAGTCCACTGTAAAGAAGTTGATGAGGGGGTTTACAAAATTGGGAAGTGGTTGAGTACATTGGACAAAAAAGTTATTATCAAGCAGAGGAAACAACAACCAAAACGTAAGCTTACTGTTGACATTTTTTCATTCTTCCAGTATTTCTGA
More
|
||||||||||
| Protein seq | MEFLLPFYNILPVYPIRAGLLEDAAPRLPTPPPATPPQKSPVEALRSSAAPRRAEDRREVEAATQRLVKPGDHPISSCLCVAQCPGYARHLFDGMSPSEECGIDDLPDELLQQILSLLSADEAVKTCVLSRRWRHLWKSTDILRVAYSTDRWKSSDEFKKFVNHLVLLRGISPLRELDLRFNARRYEDVVHDGGSDPYQCVMLWVMYAVMCRVQVLKIHNLDQIDIEVYKGMPLVSPHLTKIELSGIELKNCFLNFSSCPALKELYFTKNCGFDSVYEILSRSIQCLHIFHCQFDEYCDGCHCRYEVSDDSESVLLGGLTEAENLKLIAGPNIEYKSMVELETEENDNPLWKPAAISEHLKVVKVHCKEVDEGVYKIGKWLSTLDKKVIIKQRKQQPKRKLTVDIFSFFQYF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g10300 | LOC_Os11g10300.1 | Chr11 | 5590632 | 5592453 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGTTTCTATTACCTTTTTATAATATATTACCAGTCTATCCTATAAGGGCTGGACTTCTAGAGGACGCGGCGCCCCGGCTTCCGACTCCACCGCCGGCGACGCCTCCTCAGAAGAGCCCCGTCGAGGCGCTTCGTTCTAGCGCCGCCCCGCGCCGCGCAGAGGACCGCCGCGAAGTCGAAGCGGCGACACAGCGCCTGGTGAAGCCGGGGGATCATCCGATCTCTTCGTGTCTTTGCGTAGCACAGTGCCCCGGCTACGCCCGCCACCTGTTCGACGGAATGTCTCCCAGCGAAGAGTGCGGGATCGACGACCTCCCCGACGAGCTCCTCCAGCAGATCCTGTCCCTGCTGTCCGCCGACGAGGCCGTGAAGACCTGCGTCCTGTCCCGGCGATGGCGCCACCTCTGGAAATCCACGGACATCCTGCGCGTCGCTTACAGTACTGATAGATGGAAGAGCTCCGACGAGTTCAAGAAGTTCGTCAACCATCTGGTGCTCCTCCGTGGCATCTCGCCTTTGCGCGAGCTTGATTTGAGGTTCAATGCACGCCGATACGAGGACGTGGTGCATGATGGCGGCAGTGATCCATACCAATGCGTCATGCTGTGGGTCATGTATGCCGTAATGTGCCGAGTTCAGGTGCTCAAGATCCATAACCTCGATCAGATAGACATTGAAGTGTACAAGGGCATGCCTCTTGTCTCGCCACACTTGACCAAGATAGAACTCTCTGGTATAGAGTTGAAGAATTGCTTCCTTAACTTCTCGAGCTGTCCTGCGCTGAAGGAGCTATATTTCACCAAGAATTGCGGCTTTGATTCCGTTTACGAGATTTTGTCCCGGTCGATACAATGTCTTCATATCTTCCATTGTCAATTCGATGAATACTGTGATGGCTGTCATTGTAGATATGAGGTTAGCGACGATTCTGAAAGCGTGCTCCTAGGAGGTCTAACAGAAGCTGAGAATTTGAAGTTGATAGCTGGACCTAACATAGAATATAAATCTATGGTGGAATTGGAAACAGAAGAGAATGACAATCCATTGTGGAAACCAGCTGCAATATCAGAACACCTTAAGGTAGTGAAAGTCCACTGTAAAGAAGTTGATGAGGGGGTTTACAAAATTGGGAAGTGGTTGAGTACATTGGACAAAAAAGTTATTATCAAGCAGAGGAAACAACAACCAAAACGTAAGCTTACTGTTGACATTTTTTCATTCTTCCAGTATTTCTGA
More
|
|||||||
| Protein seq | MEFLLPFYNILPVYPIRAGLLEDAAPRLPTPPPATPPQKSPVEALRSSAAPRRAEDRREVEAATQRLVKPGDHPISSCLCVAQCPGYARHLFDGMSPSEECGIDDLPDELLQQILSLLSADEAVKTCVLSRRWRHLWKSTDILRVAYSTDRWKSSDEFKKFVNHLVLLRGISPLRELDLRFNARRYEDVVHDGGSDPYQCVMLWVMYAVMCRVQVLKIHNLDQIDIEVYKGMPLVSPHLTKIELSGIELKNCFLNFSSCPALKELYFTKNCGFDSVYEILSRSIQCLHIFHCQFDEYCDGCHCRYEVSDDSESVLLGGLTEAENLKLIAGPNIEYKSMVELETEENDNPLWKPAAISEHLKVVKVHCKEVDEGVYKIGKWLSTLDKKVIIKQRKQQPKRKLTVDIFSFFQYF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.031113 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0199900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0199900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006920 | RBH | 1.488999 | 0.0 | 0.410213 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006890 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006820 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006820 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006760 | SBH | 17.078571 | 0.0 | 2.234451 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089800 | SBH | 0.4881505 | 1.281045 | 0.838145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006740 | SBH | 1.454289 | 0.0 | 0.872801 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0090900 | SBH | 0.2881025 | 0.598182 | 1.705142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006800 | SBH | 3.780000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006820 | SBH | 8.374599 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006840 | SBH | 0.000000 | 0.0 | 0.446228 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006860 | RBH | 0.794262 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006860 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006680 | RBH | 2.995412 | 0.0 | 0.859897 |
