Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0006720 | OGI:11016710 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:5510127-5511995 | ||||||||
| Gene Symbol | OsFbox590, Os_F0068, Fbox-6 | ||||||||||
| DNA seq | ctagttatttctttctatcatttgccaaaaaaataaaaaaaatacaaatttcagaaatactggaagaatgaaaaatgtcaatagtaagcttacgttttggtgattgtttcctctgcttgataataacttttatgtccaatgtactcaaccacttcccaattttgtaaaccccctcatcaacttctttacagtggactttcactaccttaaggtgttctgatattgcagctggtttccacaatggattgtcattctcttctgtttccaattccaccatagatttatattcctgtagcagggaaataaatttcaccttcaattaatcatgcacaacaactttaacaatgcagcagttgtaaaaacatataccttggaaattttaagagtgagcttctgtagaactggtgagtgttcaagaatacaagctagtgccgagaaattagaagcaagacaccactcattgagtaacaaacacttcagcttgctaaacaaagggcaccatcttaaatcacttatgaaaataaactggataaagtgcaagcgagaaagtcaaccaaattttgttgtgaatacaataatttaagagccaagacatagtaatgcatgaaacatattcttaagatgttaaaatggtgaatcagatacaggaaataacataaattaaggagatatctgataagatgttaacgtaagcttactatgttaggtccagctatcaacttcaaattctcagcttctgttagacctcctaggagcaagctttcagaatcgtcgctaacctcatagctacaatgacacctatcacagtattcatcttcacaattaccagagtaactattactacacgagtcatcgcaatcctggtggggtctgacatgcttcgactaatgagggcattattcccagaaaaggagttctgccacaaaaaccttcaagtaagagcgtaatgaggctcggtgcataaatgtctgtgcggtgatactcaccgaattgacaatggaaaatatgaagacattgtatcgaccgggacaaaatctcgtaaacggaatcagagccgcaattcttggtgaaatatagctccttcagtgcaggacagctcgagaagttaaggaagcaattcttcaactctataccagagagttctatcttggtcaagtgtggcgagacaagaggcatgcccttgtacacttcaatgtctatttgatcgaggttatggatcttgagcacctgaactcggcacattacggcatacatgacccacagcatgacgcattggtatggatcactgccgccatcatgcaccacgtcctcgtatcggcgtgcattgaacctcaaatcaagctcgcgcagaggcgagatgccacggaggagcaccagatggttgacgaatttcttgaactcgtcggagctcttccatctctctgtactgaaagcgacgcgcaggatgtccgtggatttccagaggtggcgccatcgccgggacaggacgcaggtcttgacggcctcgtcggcggacagcagggacaggatctgctggaggagctcatcggggaggtcgtcgatcccacactcttcgctgggagacattccgtcgaacaggtggcgggcgtagccggggcactgtgctacgcaaagacacgaagagatcggatgatcccccggcttcaccaggggttgtgtcgccgcttcgacttcgcggcagtcctctgcgcggcgcggggcggcgctagaacgaagcgcctcgccggggctcttctgaggaggcgtcgccggcggtggagtcggaagccggggcgccgcgtcctctagaagtccagcccttataggatagactggtaatatattataaaaaggtaatagaaactccat
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| CDS seq | atggagtttctattacctttttataatatattaccagtctatcctataagggctggacttctagaggacgcggcgccccggcttccgactccaccgccggcgacgcctcctcagaagagccccggcgaggcgcttcgttctagcgccgccccgcgccgcgcagaggactgccgcgaagtcgaagcggcgacacaacccctggtgaagccgggggatcatccgatctcttcgtgtctttgcgtagcacagtgccccggctacgcccgccacctgttcgacggaatgtctcccagcgaagagtgtgggatcgacgacctccccgatgagctcctccagcagatcctgtccctgctgtccgccgacgaggccgtcaagacctgcgtcctgtcccggcgatggcgccacctctggaaatccacggacatcctgcgcgtcgctttcagtacagagagatggaagagctccgacgagttcaagaaattcgtcaaccatctggttagcgacgattctgaaagcttgctcctaggaggtctaacagaagctgagaatttgaagttgatagctggacctaacatagaatataaatctatggtggaattggaaacagaagagaatgacaatccattgtggaaaccagctgcaatatcagaacaccttaaggtagtgaaagtccactgtaaagaagttgatgagggggtttacaaaattgggaagtggttgagtacattggacataaaagttattatcaagcagaggaaacaatcaccaaaacaaagaaataactag
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| Protein seq | MEFLLPFYNILPVYPIRAGLLEDAAPRLPTPPPATPPQKSPGEALRSSAAPRRAEDCREVEAATQPLVKPGDHPISSCLCVAQCPGYARHLFDGMSPSEECGIDDLPDELLQQILSLLSADEAVKTCVLSRRWRHLWKSTDILRVAFSTERWKSSDEFKKFVNHLVSDDSESLLLGGLTEAENLKLIAGPNIEYKSMVELETEENDNPLWKPAAISEHLKVVKVHCKEVDEGVYKIGKWLSTLDIKVIIKQRKQSPKQRNN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0006720 | OsLima_11g0006720.01 | Chr11 | 5510127 | 5511995 | - | NAM | ||
| CDS seq | atggagtttctattacctttttataatatattaccagtctatcctataagggctggacttctagaggacgcggcgccccggcttccgactccaccgccggcgacgcctcctcagaagagccccggcgaggcgcttcgttctagcgccgccccgcgccgcgcagaggactgccgcgaagtcgaagcggcgacacaacccctggtgaagccgggggatcatccgatctcttcgtgtctttgcgtagcacagtgccccggctacgcccgccacctgttcgacggaatgtctcccagcgaagagtgtgggatcgacgacctccccgatgagctcctccagcagatcctgtccctgctgtccgccgacgaggccgtcaagacctgcgtcctgtcccggcgatggcgccacctctggaaatccacggacatcctgcgcgtcgctttcagtacagagagatggaagagctccgacgagttcaagaaattcgtcaaccatctggttagcgacgattctgaaagcttgctcctaggaggtctaacagaagctgagaatttgaagttgatagctggacctaacatagaatataaatctatggtggaattggaaacagaagagaatgacaatccattgtggaaaccagctgcaatatcagaacaccttaaggtagtgaaagtccactgtaaagaagttgatgagggggtttacaaaattgggaagtggttgagtacattggacataaaagttattatcaagcagaggaaacaatcaccaaaacaaagaaataactag
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| Protein seq | MEFLLPFYNILPVYPIRAGLLEDAAPRLPTPPPATPPQKSPGEALRSSAAPRRAEDCREVEAATQPLVKPGDHPISSCLCVAQCPGYARHLFDGMSPSEECGIDDLPDELLQQILSLLSADEAVKTCVLSRRWRHLWKSTDILRVAFSTERWKSSDEFKKFVNHLVSDDSESLLLGGLTEAENLKLIAGPNIEYKSMVELETEENDNPLWKPAAISEHLKVVKVHCKEVDEGVYKIGKWLSTLDIKVIIKQRKQSPKQRNN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0199900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10300 | RBH | 0.031113 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0199900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006920 | SBH | 1.488999 | 0.0 | 0.410213 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006890 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006830 | SBH | 0.054045 | 0.327524 | 0.558396 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006840 | SBH | 0.007779 | 0.047929 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006760 | SBH | 17.078571 | 0.0 | 2.234451 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089800 | SBH | 0.4881505 | 1.281045 | 0.838145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006740 | SBH | 1.454289 | 0.0 | 0.872801 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0090900 | SBH | 0.2881025 | 0.598182 | 1.705142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006760 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006800 | SBH | 3.780000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006820 | SBH | 8.374599 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006840 | SBH | 0.000000 | 0.0 | 0.446228 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006860 | RBH | 0.794262 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006860 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006680 | SBH | 2.995412 | 0.0 | 0.859897 |
