Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0006820 | OGI:11016710 | 9/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:5558773-5559678 | ||||||||
| Gene Symbol | OsFbox590, Os_F0068, Fbox-6 | ||||||||||
| DNA seq | TTAACGTAAGCTTACTATGTTAGGTCCAGCTATCAACTTCAAATTCTCAGCTTCTGTTAGACCTCCTAGGAGCACGCTTTCAGAATCGTCGCTAACCTCATATCTAAAATGGCAGCCATCACAGTATTCATCTTCACAATTACCAGAGTAACTATTACTACACGAGTCATCACAATCCTGGTGGGGTCTGACAGATGCTTCAACTAATGAGGGCATTCTTCCGAGAAAAGGAGTTCTGCCACAAAAACCTTCAAGTAAGAGGGTAATGAGGCTCGGTGCATAAATGTCCGTGCGGTGATACTCACCGAATTGACAGTGGAAGATATGAAGACATTGTATCGACCAGGACACGATCTCGTAAACGGAATCAAAGCCGCAATTCTTGGTGAAATATAGCTCCTTCAGCGCAGGACAGCTCGAGAAGTTAAGGAAGCAATTCTTCAACTCTATACCAGAGAGTTCTATCTTGGTCAAGTGTGGCGAGACAAGAGGCATGCCCTTGTACACTTCAATGTCTATCTGATCGAGGTTATGGATCTTGAGCACCTGAACTCGGCACATCACGGCATACATGACCCACAGCATGACGCCCTGGTATGGATCACTGCCGCCATCATGCACCACGTCCTCGTATCGGCGTGCATTGAACCTCAAATCAAGCTCGCGCAGAGGCGAGATGCCACGGAGGAGCACCAGATGGTTGACGAACTTCTTGAACTCGTCGGAGCTCTTCCATCTCTCGGTACTGTAAGCGACGCGCAGGATGTCCGTGGATTTCCAGAGGTGGCGCCATCGCCGGGACAGGACGCAGGTCTTGACGACCTCGTCGGCGGACAGCAGGGACAGGATCTGCTGGAGGAGCTCGTCGGGGAGGTCGTCGATCCCGCACTCTTCGCTGGGAGACAT
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| CDS seq | ATGTCTCCCAGCGAAGAGTGCGGGATCGACGACCTCCCCGACGAGCTCCTCCAGCAGATCCTGTCCCTGCTGTCCGCCGACGAGGTCGTCAAGACCTGCGTCCTGTCCCGGCGATGGCGCCACCTCTGGAAATCCACGGACATCCTGCGCGTCGCTTACAGTACCGAGAGATGGAAGAGCTCCGACGAGTTCAAGAAGTTCGTCAACCATCTGGTGCTCCTCCGTGGCATCTCGCCTCTGCGCGAGCTTGATTTGAGGTTCAATGCACGCCGATACGAGGACGTGGTGCATGATGGCGGCAGTGATCCATACCAGGGCGTCATGCTGTGGGTCATGTATGCCGTGATGTGCCGAGTTCAGGTGCTCAAGATCCATAACCTCGATCAGATAGACATTGAAGTGTACAAGGGCATGCCTCTTGTCTCGCCACACTTGACCAAGATAGAACTCTCTGGTATAGAGTTGAAGAATTGCTTCCTTAACTTCTCGAGCTGTCCTGCGCTGAAGGAGCTATATTTCACCAAGAATTGCGGCTTTGATTCCGTTTACGAGATCGTGTCCTGGTCGATACAATGTCTTCATATCTTCCACTGTCAATTCGGTGAGTATCACCGCACGGACATTTATGCACCGAGCCTCATTACCCTCTTACTTGAAGGTTTTTGTGGCAGAACTCCTTTTCTCGGAAGAATGCCCTCATTAGTTGAAGCATCTGTCAGACCCCACCAGGATTGTGATGACTCGTGTAGTAATAGTTACTCTGGTAATTGTGAAGATGAATACTGTGATGGCTGCCATTTTAGATATGAGGTTAGCGACGATTCTGAAAGCGTGCTCCTAGGAGGTCTAACAGAAGCTGAGAATTTGAAGTTGATAGCTGGACCTAACATAGTAAGCTTACGTTAA
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| Protein seq | MSPSEECGIDDLPDELLQQILSLLSADEVVKTCVLSRRWRHLWKSTDILRVAYSTERWKSSDEFKKFVNHLVLLRGISPLRELDLRFNARRYEDVVHDGGSDPYQGVMLWVMYAVMCRVQVLKIHNLDQIDIEVYKGMPLVSPHLTKIELSGIELKNCFLNFSSCPALKELYFTKNCGFDSVYEIVSWSIQCLHIFHCQFGEYHRTDIYAPSLITLLLEGFCGRTPFLGRMPSLVEASVRPHQDCDDSCSNSYSGNCEDEYCDGCHFRYEVSDDSESVLLGGLTEAENLKLIAGPNIVSLR |
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| Function | F-box/LRR-repeat protein At3g26922 [UniProtKB/Swiss-Prot:Q9LJF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0006820 | OsARC_11g0006820.01 | Chr11 | 5558773 | 5559678 | - | NAM | ||
| CDS seq | ATGTCTCCCAGCGAAGAGTGCGGGATCGACGACCTCCCCGACGAGCTCCTCCAGCAGATCCTGTCCCTGCTGTCCGCCGACGAGGTCGTCAAGACCTGCGTCCTGTCCCGGCGATGGCGCCACCTCTGGAAATCCACGGACATCCTGCGCGTCGCTTACAGTACCGAGAGATGGAAGAGCTCCGACGAGTTCAAGAAGTTCGTCAACCATCTGGTGCTCCTCCGTGGCATCTCGCCTCTGCGCGAGCTTGATTTGAGGTTCAATGCACGCCGATACGAGGACGTGGTGCATGATGGCGGCAGTGATCCATACCAGGGCGTCATGCTGTGGGTCATGTATGCCGTGATGTGCCGAGTTCAGGTGCTCAAGATCCATAACCTCGATCAGATAGACATTGAAGTGTACAAGGGCATGCCTCTTGTCTCGCCACACTTGACCAAGATAGAACTCTCTGGTATAGAGTTGAAGAATTGCTTCCTTAACTTCTCGAGCTGTCCTGCGCTGAAGGAGCTATATTTCACCAAGAATTGCGGCTTTGATTCCGTTTACGAGATCGTGTCCTGGTCGATACAATGTCTTCATATCTTCCACTGTCAATTCGGTGAGTATCACCGCACGGACATTTATGCACCGAGCCTCATTACCCTCTTACTTGAAGGTTTTTGTGGCAGAACTCCTTTTCTCGGAAGAATGCCCTCATTAGTTGAAGCATCTGTCAGACCCCACCAGGATTGTGATGACTCGTGTAGTAATAGTTACTCTGGTAATTGTGAAGATGAATACTGTGATGGCTGCCATTTTAGATATGAGGTTAGCGACGATTCTGAAAGCGTGCTCCTAGGAGGTCTAACAGAAGCTGAGAATTTGAAGTTGATAGCTGGACCTAACATAGTAAGCTTACGTTAA
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| Protein seq | MSPSEECGIDDLPDELLQQILSLLSADEVVKTCVLSRRWRHLWKSTDILRVAYSTERWKSSDEFKKFVNHLVLLRGISPLRELDLRFNARRYEDVVHDGGSDPYQGVMLWVMYAVMCRVQVLKIHNLDQIDIEVYKGMPLVSPHLTKIELSGIELKNCFLNFSSCPALKELYFTKNCGFDSVYEIVSWSIQCLHIFHCQFGEYHRTDIYAPSLITLLLEGFCGRTPFLGRMPSLVEASVRPHQDCDDSCSNSYSGNCEDEYCDGCHFRYEVSDDSESVLLGGLTEAENLKLIAGPNIVSLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0209200 | SBH | 0.000000 | 0.000000 | 0.306795 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10300 | RBH | 0.031113 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0209200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006920 | RBH | 1.488999 | 0.0 | 0.410213 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006930 | SBH | 0.000000 | 0.000000 | 0.269492 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006820 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006840 | SBH | 0.007779 | 0.047929 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006790 | SBH | 0.307655 | 0.691442 | 0.774625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089800 | SBH | 0.4881505 | 1.281045 | 0.838145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006770 | SBH | 0.011060 | 0.088273 | 0.035899 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0090900 | SBH | 0.2881025 | 0.598182 | 1.705142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006760 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006830 | SBH | 0.021393 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006840 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006870 | SBH | 0.000000 | 0.0 | 0.052020 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006880 | SBH | 0.014501 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006890 | SBH | 0.039427 | 0.142880 | 0.072140 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006700 | SBH | 0.118869 | 0.0 | 0.998583 |
