Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g14580 | OGI:09026240 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:8630075-8633198 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATCGGTAGTTATTCGGTTGTTTTGTGAAAAGATCAGAACGCGGTAAGCCTGTAATGATCAGAAATTTTCACATAAGGTCTCCAGACTCGGGAGTCCGGCCGCTATGATCGATAGCGGTCCGGTCTCTACTACTCTCTCCGTTTTACAATGTAAGTCATTTTAGCATTTTCTACATTCATATTAATGTTAAAGAATCTAGACATATATATATATATATATATCTCTATTTAGATTCATTAACATCAATATGAATGTGAAAAATGTTAGAATGACTTACATTGTGAAACGGAGAAAGTATCAAGCTTCCTCCGGATGAACCGTGGGATGCTGGTCAGAGAGAGTTAGCCTGGAGCGTTGGCCAGTTCGGACTTCGGAGGATACAAAAAAGTATCTAAATTCACAACACAACCATTCTATTCATGTCTTCTTCACCAGCAACATCTGTTCAATCTCCAAATAATAATAATAATAAAGAAAAAAACCTAATTAAACAACATCTTCAGTTCACCTGCCTTTAGCGAGGCTTCGGTTGGCTTTGTCTGTAAGAGCTTGGTCGATCGCTGCTGTAATCGCTGCTAGTGTTTCCCTGACTCCCCGGCGCTCTTCTTGATCGTGGCCCGATGGACTCACCCGATTCCATGATGGAACTGTAGGTATCTTCTGCGTACGTAGTCCTAAATATAGAGTTTAGATCTTCTCCATGCGTTTGTCCTTGCAAGTGCTTCAGGATCTGAAAGGAGAAAAGGAACTTCTTGTCACATATAGGAGTATCAAATATCAGTTATTTGGTTATGTAGTTATTGTTCTATTTTATTCTGGAACAAGGCACTACCACTACTTGTACAGTTGTACTGAAGGTTTAGCAGTTTCGGTGTTTCAAACTCAAAACTTTTCAGGGAAGGAAACGAACCTGAACCATGGATGGACGCAGATGTGCTGATTGGCGCACGGCAGCGGCGGCACACTCCATCATTCGCATCATTTTGTTTTCATCATAATCATCTCCAATATCCGGATCAACAAGGATATCAAAGTTGCCTTCCTCCATAGCTTCTGAAATCAAGGGTTTTGCCTGAAGAAGCAAATTCAGAAATGTTCTATCAGGCTAGACATCAAAGTTCCTCTTAGAACTACATTTATTGGAGTGAAGGAAATGTATTAGATGTCAAGGAATGAATTTTGTCAAGATTCAAGAACTTCTTTTTGTTAGAAACTGACCCAACCAACTAACGTGCTGTCCATGTAAGACTCAGATGACTGAACCGGCAGCCTTCCAGTTATCAGTTCCAAGAGGACGACACCAAAAGCAAAGACATCGGCTTTGTCAGTAAGCTTCCCGCTAGACAGGAACTCTGGAGCAATGTACCTGCAGAAAAGAGGATTTGCTATGAATACAATGAGGGATAATATATACTTGTGCTATAGATATTCATGTTCAGAAATTAGAATGAACAAACTCGGAATACATAGGGAATGCTGAAGAGAAGTACTGACCCAAATGTGCCCATTATTCTTGTGGAAACATGGGTGTGGTTTCCTGGTTGCTACTTTGCTAGACCAAAATCTGCAACCTGCAAAGGATCAAGACATACTGAGTATAGGACTGTGCAATATAATGGCATATTGTTTGCAATTCAAACTTGTCCTGGGATTGCTTCAAAAAAAAAACTTGTCCTGGGAAAACCAGATCTTCTTGAAACGTTGAATAATATGTGCAGAGAGAGTACCTTGGGCTCAAAACCATGATCCAGAAGAATATTGGATGCCTTGACATCACGATGTATAATTTTAGGAGAACCTGAATAGTATAAACGGACTTTTTCGTATTAAATCACAGTTCAACACTAGATACGAAACTGAATATAAGTGTATAACGCGAAATGGATGGGTGGAGTAGAACTAACAGTCATCGTGTAGATAGGCCAAACCCCTTGCAGATCCCACAGCAATTTTCCATCTTTGCTGCCAATCCAGAGGTGGCCACTTGTCCCCTGAATTAAGTTCAACAGTAACATGATCAGATCAGAGTAAAAAACCAAGACTAAAAAAACATTGACTAAACAGTCAACGGATGCATTTGACAGAAGAAAAAACAAATATGTAAACCATTATTTTTTTTATTCATTTTAGATGTAGACATAGGTTTTATACCGTGTAAATGCGTGTCGAGCGTCTTGTTGGGGACGAACTCGTAAACCAGCAGCCTGTCGTTGCCGGAGATGCAGTATCCGACGAGGGAGACGAGGTTCCTGTGGTGCACGCGTGTGATGATGTCCGCCTCGGCGCGGAACTCGCGGTCGCCCTGCTTGCTCTCCGTCTTGAGCTTCTTGATCGCCACCTCGGTGCCGTCCTGCAGCCTCCCCCTGTACACGCACCCGAATCCGCCCTGCCCGATGACGTTGTCGGGGGAGAACCCGCCCGTCGCGGCGGCCAGCTGGTCGTACGAGAGCGAGCCGCCGTCGATGGAGATGGAGTGCGGGCGCTCGGAGCCGGCGTCGGAGAACGTGCCGCCGCTGGTCTGCGGCGCCGTCGGGTGGTGGTGCTGCTGCTGCATGAAGACGAATGGCAGCGGCGGCTGGTCACCTGCAAGCACCAAAGTGTGGTGGATATCTCCGACGACGACGACGACATGGACGTACGTACGTACACGACGTCGAACGTGACAAGAATCACAAGATGCGCGCACCTTTGTAGTAGGGGTTGGGGTTGTATAACATTGGCGGTGGTAGCGGAAGCGGCTGGGCCTGTTGCCGCCGCCGCCGCCGCCTCCATCGCCGGATCCAGAGCGCGAGCACGTACAAGCCCAAAACCAGACCGACAACCCCAGCGGCCACTTTGACGGCCACGGAATTCAAGAACGAGGGCGAGCCCGTCTGGGGTGCCGCGGGTGCCGGGTCGGACGCCGGGGCCGTCGTGATGATCTCGGTCACGGCACGGCGTGCTCTCTGCCCGTGGCCGGAGGAGATGACGACGACACCATGCACCGTCGTCGGTCCACCGGTGATGGTCACCAGGGCGGCCTTGGCGCGATCCACCACGTCATAGAGCCTCGCGAAAGCTGAAGGCTCTTCAGGGGGTACATACTGAGGCGGTGGGGGTACGAACGCTGCCGGCCGTGCCAT
More
|
||||||||||
| CDS seq | ATGGCACGGCCGGCAGCGTTCGTACCCCCACCGCCTCAGTATGTACCCCCTGAAGAGCCTTCAGCTTTCGCGAGGCTCTATGACGTGGTGGATCGCGCCAAGGCCGCCCTGGTGACCATCACCGGTGGACCGACGACGGTGCATGGTGTCGTCGTCATCTCCTCCGGCCACGGGCAGAGAGCACGCCGTGCCGTGACCGAGATCATCACGACGGCCCCGGCGTCCGACCCGGCACCCGCGGCACCCCAGACGGGCTCGCCCTCGTTCTTGAATTCCGTGGCCGTCAAAGTGGCCGCTGGGGTTGTCGGTCTGGTTTTGGGCTTGTACGTGCTCGCGCTCTGGATCCGGCGATGGAGGCGGCGGCGGCGGCGGCAACAGGCCCAGCCGCTTCCGCTACCACCGCCAATGTTATACAACCCCAACCCCTACTACAAAGGTGACCAGCCGCCGCTGCCATTCGTCTTCATGCAGCAGCAGCACCACCACCCGACGGCGCCGCAGACCAGCGGCGGCACGTTCTCCGACGCCGGCTCCGAGCGCCCGCACTCCATCTCCATCGACGGCGGCTCGCTCTCGTACGACCAGCTGGCCGCCGCGACGGGCGGGTTCTCCCCCGACAACGTCATCGGGCAGGGCGGATTCGGGTGCGTGTACAGGGGGAGGCTGCAGGACGGCACCGAGGTGGCGATCAAGAAGCTCAAGACGGAGAGCAAGCAGGGCGACCGCGAGTTCCGCGCCGAGGCGGACATCATCACACGCGTGCACCACAGGAACCTCGTCTCCCTCGTCGGATACTGCATCTCCGGCAACGACAGGCTGCTGGTTTACGAGTTCGTCCCCAACAAGACGCTCGACACGCATTTACACGGGGACAAGTGGCCACCTCTGGATTGGCAGCAAAGATGGAAAATTGCTGTGGGATCTGCAAGGGGTTTGGCCTATCTACACGATGACTGTTCTCCTAAAATTATACATCGTGATGTCAAGGCATCCAATATTCTTCTGGATCATGGTTTTGAGCCCAAGGTTGCAGATTTTGGTCTAGCAAAGTACATTGCTCCAGAGTTCCTGTCTAGCGGGAAGCTTACTGACAAAGCCGATGTCTTTGCTTTTGGTGTCGTCCTCTTGGAACTGATAACTGGAAGGCTGCCGGTTCAGTCATCTGAGTCTTACATGGACAGCACGTTAGTTGGTTGGGCAAAACCCTTGATTTCAGAAGCTATGGAGGAAGGCAACTTTGATATCCTTGTTGATCCGGATATTGGAGATGATTATGATGAAAACAAAATGATGCGAATGATGGAGTGTGCCGCCGCTGCCGTGCGCCAATCAGCACATCTGCGTCCATCCATGGTTCAGATCCTGAAGCACTTGCAAGGACAAACGCATGGAGAAGATCTAAACTCTATATTTAGGACTACGTACGCAGAAGATACCTACAGTTCCATCATGGAATCGGGCTTACCGCGTTCTGATCTTTTCACAAAACAACCGAATAACTACCGATAA
More
|
||||||||||
| Protein seq | MARPAAFVPPPPQYVPPEEPSAFARLYDVVDRAKAALVTITGGPTTVHGVVVISSGHGQRARRAVTEIITTAPASDPAPAAPQTGSPSFLNSVAVKVAAGVVGLVLGLYVLALWIRRWRRRRRRQQAQPLPLPPPMLYNPNPYYKGDQPPLPFVFMQQQHHHPTAPQTSGGTFSDAGSERPHSISIDGGSLSYDQLAAATGGFSPDNVIGQGGFGCVYRGRLQDGTEVAIKKLKTESKQGDREFRAEADIITRVHHRNLVSLVGYCISGNDRLLVYEFVPNKTLDTHLHGDKWPPLDWQQRWKIAVGSARGLAYLHDDCSPKIIHRDVKASNILLDHGFEPKVADFGLAKYIAPEFLSSGKLTDKADVFAFGVVLLELITGRLPVQSSESYMDSTLVGWAKPLISEAMEEGNFDILVDPDIGDDYDENKMMRMMECAAAAVRQSAHLRPSMVQILKHLQGQTHGEDLNSIFRTTYAEDTYSSIMESGLPRSDLFTKQPNNYR |
||||||||||
| Function | Proline-rich receptor-like protein kinase PERK13 [UniProtKB/Swiss-Prot:Q9CAL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g14580 | LOC_Os09g14580.1 | Chr09 | 8630075 | 8633198 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCACGGCCGGCAGCGTTCGTACCCCCACCGCCTCAGTATGTACCCCCTGAAGAGCCTTCAGCTTTCGCGAGGCTCTATGACGTGGTGGATCGCGCCAAGGCCGCCCTGGTGACCATCACCGGTGGACCGACGACGGTGCATGGTGTCGTCGTCATCTCCTCCGGCCACGGGCAGAGAGCACGCCGTGCCGTGACCGAGATCATCACGACGGCCCCGGCGTCCGACCCGGCACCCGCGGCACCCCAGACGGGCTCGCCCTCGTTCTTGAATTCCGTGGCCGTCAAAGTGGCCGCTGGGGTTGTCGGTCTGGTTTTGGGCTTGTACGTGCTCGCGCTCTGGATCCGGCGATGGAGGCGGCGGCGGCGGCGGCAACAGGCCCAGCCGCTTCCGCTACCACCGCCAATGTTATACAACCCCAACCCCTACTACAAAGGTGACCAGCCGCCGCTGCCATTCGTCTTCATGCAGCAGCAGCACCACCACCCGACGGCGCCGCAGACCAGCGGCGGCACGTTCTCCGACGCCGGCTCCGAGCGCCCGCACTCCATCTCCATCGACGGCGGCTCGCTCTCGTACGACCAGCTGGCCGCCGCGACGGGCGGGTTCTCCCCCGACAACGTCATCGGGCAGGGCGGATTCGGGTGCGTGTACAGGGGGAGGCTGCAGGACGGCACCGAGGTGGCGATCAAGAAGCTCAAGACGGAGAGCAAGCAGGGCGACCGCGAGTTCCGCGCCGAGGCGGACATCATCACACGCGTGCACCACAGGAACCTCGTCTCCCTCGTCGGATACTGCATCTCCGGCAACGACAGGCTGCTGGTTTACGAGTTCGTCCCCAACAAGACGCTCGACACGCATTTACACGGGGACAAGTGGCCACCTCTGGATTGGCAGCAAAGATGGAAAATTGCTGTGGGATCTGCAAGGGGTTTGGCCTATCTACACGATGACTGTTCTCCTAAAATTATACATCGTGATGTCAAGGCATCCAATATTCTTCTGGATCATGGTTTTGAGCCCAAGGTTGCAGATTTTGGTCTAGCAAAGTACATTGCTCCAGAGTTCCTGTCTAGCGGGAAGCTTACTGACAAAGCCGATGTCTTTGCTTTTGGTGTCGTCCTCTTGGAACTGATAACTGGAAGGCTGCCGGTTCAGTCATCTGAGTCTTACATGGACAGCACGTTAGTTGGTTGGGCAAAACCCTTGATTTCAGAAGCTATGGAGGAAGGCAACTTTGATATCCTTGTTGATCCGGATATTGGAGATGATTATGATGAAAACAAAATGATGCGAATGATGGAGTGTGCCGCCGCTGCCGTGCGCCAATCAGCACATCTGCGTCCATCCATGGTTCAGATCCTGAAGCACTTGCAAGGACAAACGCATGGAGAAGATCTAAACTCTATATTTAGGACTACGTACGCAGAAGATACCTACAGTTCCATCATGGAATCGGGCTTACCGCGTTCTGATCTTTTCACAAAACAACCGAATAACTACCGATAA
More
|
|||||||
| Protein seq | MARPAAFVPPPPQYVPPEEPSAFARLYDVVDRAKAALVTITGGPTTVHGVVVISSGHGQRARRAVTEIITTAPASDPAPAAPQTGSPSFLNSVAVKVAAGVVGLVLGLYVLALWIRRWRRRRRRQQAQPLPLPPPMLYNPNPYYKGDQPPLPFVFMQQQHHHPTAPQTSGGTFSDAGSERPHSISIDGGSLSYDQLAAATGGFSPDNVIGQGGFGCVYRGRLQDGTEVAIKKLKTESKQGDREFRAEADIITRVHHRNLVSLVGYCISGNDRLLVYEFVPNKTLDTHLHGDKWPPLDWQQRWKIAVGSARGLAYLHDDCSPKIIHRDVKASNILLDHGFEPKVADFGLAKYIAPEFLSSGKLTDKADVFAFGVVLLELITGRLPVQSSESYMDSTLVGWAKPLISEAMEEGNFDILVDPDIGDDYDENKMMRMMECAAAAVRQSAHLRPSMVQILKHLQGQTHGEDLNSIFRTTYAEDTYSSIMESGLPRSDLFTKQPNNYR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.060303 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0314800 | RBH | 0.0 | 0.0 | 0.228829 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38710 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0314800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008210 | SBH | 0.0 | 21.368435 | 2.673128 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008190 | SBH | 0.000000 | 4.195437 | 0.149855 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008420 | SBH | 0.0 | 15.548916 | 2.286594 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005430 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0153100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005590 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0194900 | SBH | 4.9785885 | 0.172745 | 0.2012335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008290 | SBH | 0.000000 | 0.086703 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006510 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006510 | SBH | 1.915170 | 11.522496 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008040 | SBH | 0.000000 | 0.0 | 0.204835 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008060 | SBH | 0.042798 | 13.423765 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008610 | SBH | 0.0 | 0.434927 | 1.897642 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005360 | SBH | 0.0 | 0.0 | 0.0 |
