Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g31920 | OGI:08058170 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:19787212-19789539 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTCTAACGATTGATTTAAACAACTGTTACAGATATAGTAATATGTAACGACTCTCTTTAAGCTATCATACATTAACAGAAACAATTAAAATTCGATAGTTGCAGTAGTACATCGTTTGCTCATACCCATTTGGTTTGTCCCAGTACCGACCCAGCGCCTCACGCCTCTCCACCCTCTCGATACTCTCCACGTCGCCATTACCGTCGACCCACCCTCCTCTCTCCAGCTCCCACTTCATCTTCTCCCACACCACCATGTCCACCCCAACTCCACCTGCCGCGCCAGAGTTCGGCGGCGGCGCCGCCGGTCGAAACCACATCACCCCGTCGACCTCCTGAGGCCCACCTTCTTGCACTACTGCACCGGTGCCGCCTAGCAGCGCCGTCGACCGGCGCACCGTCACGTTCACCTTGACCTCATCATCCGGCTGCTTGCCGCTGATGCTGCCCCGGTGAGTGTTGTCGCAGCTGTATATCTCCTCCCACCTCTGCTCCAGCGTCATCTCGTAGAACATGCACCGGTTGACCTGGTCCTTGAGCCGCCGCTCGCCGTCTCTGATGAACATGAACGGGCAGTACCATTTGCCGACGACGGCGGCCGGCGAGCCGCCTCCCGCGCCGATGCCGAAGCCGTCGAGGTCTGGCATCCGGCGGCGGAGCGGCCAGTCTACCCAGTGCGCGTGGTCGGCGAGGCCGTCGTAGCTCGTACGCGAGGTCTTGCTCACCTGCCAGCCCTTCAACCTCAGCAAGCTCGGCGGGACGCCATCCGGCGCGACCGCCGCCGCCTTGAATCCCATCGGGTAGTGTGGCGCCACCTCCACCTGCTGGTAGACGTCGCCGTGGTGGAACGGCCTCGGTGGCGCGTCGTCCACGAAGGACAAGAAGAGGATCCTCGTCTTGTCCTCCTCCCGTGCGTGTTGGAAATGGCCAAGATCGGAGACACACAAACACGAGAGTGAGTAGCAGAGCTTGTGAAGCTTGACAATGGCAACGAACGCCCTGGCAACGAATGCCGGCTTTTCTCTATTTTCACTCGGGTGATCAAACAACAGGATGAACATATGCTTATATAGGCCCAGGGTGACGCACAAATGGAGCACGAACTCCTTCCCCGGCCTTTGCTCGCACGATCCGCACGTCCCGGCTCACGCCATGCATGAGCACAAACTCAGCGCACGACGCGGCCGCCAGCGTCCGCGCACGACGCCACGTCTCCAACTGAACCCGATACACACGCTCGCAGCTAGCTAGCCTGCACTAAACTCGGACGAACCTCCTTGCGACGGACGCGTTAACAACAAACACACACACGATGCACGCGAACTGACCTGAACACACACGGTCAGGTTTATTTCCTAACAATCACCCCCTAAACCTGACCTACAGGAGCGTCGGCTCGTCGTCGGCAGAGGTGAGGAGCGCCTCCTCCTTCCTTGGCTTGCGGCAATCTCGGGAGAGATGGCCACGAACACCACAGTTGTAGCACTTCCCTCCTGGACGGCGCGGACGCCAGTTTGCCTCCGAGCTCACGCTGCTGCCGCCGTCGTCATTGTCACTGTTTCGGCCGTCATCCTTGGCGCCGCCCTCACGCACGCGCTCCTTGTCGCGACGTTGGCGCCGACGTGCCTCCCACTGCTCCTCGGTGAGAAGTAGCTACTCGCCATGGGCCTCCACGTGATCTTCAGCGTCGGCGTCCTCCGCCACTTGCAGGCGCCCGACGAGCTCCTCGACGGACATGACATCCATGTCCGCGAGCATCTCAATCGCCACCGCGACTTGCTTCAACCTCTTCGGGACCACGCGCAGGACTTTCTTCACCATGCGACTGTCTTCCATCTCCTCCCCGAGGTCGCGCAGGCTCGCGGTGAGCCTATTGATGCGCATCGCAAAGTCACCAACGGTCTCCCCGTCGCGGAACGCCATGTTCTCAAACTCCTTCATGAGGCGTTGCATGCACGCCGATTTCACGCGGTCGTCGCCGGCTCGCATCTTCTTCACCGAGTCCCACGCCTCCTTCGCCGACGTCTTCACGGCGAGCCCGGCCTTCATCTCCGATGGCACCGCACGCAAGATGGCGGCCAACGCCCGCCGATCCTTAGCGCGGTCGTTGGTGACCGCCTCCACCACGTCCCACAACTCCAACGCCTCCAAGCTCACCCGCATAACCGAGGCCCACTGATGATAGTTAGCCCTGGTTAGCATCGGCAGCTCCACGACGCTGGAATTGGGCACGACGCGCTCCACCACGGCCTGACGCGGTGCGCTGCCATCACCGGTGCCGCTGGAGCTCGAGTCCTCGATGCGAAGCGTCTTCGGCGGCGTCATCAT
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| CDS seq | ATGATGACGCCGCCGAAGACGCTTCGCATCGAGGACTCGAGCTCCAGCGGCACCGGTGATGGCAGCGCACCGCGTCAGGCCGTGGTGGAGCGCGTCGTGCCCAATTCCAGCGTCGTGGAGCTGCCGATGCTAACCAGGGCTAACTATCATCAGTGGGCCTCGGTTATGCGGGTGAGCTTGGAGGCGTTGGAGTTGTGGGACGTGGTGGAGGCGGTCACCAACGACCGCGCTAAGGATCGGCGGGCGTTGGCCGCCATCTTGCGTGCGGTGCCATCGGAGATGAAGGCCGGGCTCGCCGTGAAGACGTCGGCGAAGGAGGCGTGGGACTCGGTGAAGAAGATGCGAGCCGGCGACGACCGCGTGAAATCGGCGTGCATGCAACGCCTCATGAAGGAGTTTGAGAACATGGCGTTCCGCGACGGGGAGACCGTTGGTGACTTTGCGATGCGCATCAATAGGCTCACCGCGAGCCTGCGCGACCTCGGGGAGGAGATGGAAGACAGTCGCATGGTGAAGAAAGTCCTGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCGCGGTGGCGATTGAGATGCTCGCGGACATGGATGTCATGTCCGTCGAGGAGCTCGTCGGGCGCCTGCAAGTGGCGGAGGACGCCGACGCTGAAGATCACGAGCGCGTGCGTGAGGGCGGCGCCAAGGATGACGGCCGAAACAGTGACAATGACGACGGCGGCAGCAGCGTGAGCTCGGAGGCAAACTGGCGTCCGCGCCGTCCAGGAGGGAAGTGCTACAACTGTGGTGTTCGTGGCCATCTCTCCCGAGATTGCCGCAAGCCAAGGAAGGAGGAGGCGCTCCTCACCTCTGCCGACGACGAGCCGACGCTCCTTGAAAATAGAGAAAAGCCGGCATTCGTTGCCAGGGCGTTCGTTGCCATTGTCAAGCTTCACAAGCTCTGCTACTCACTCTCGTGTTTGTGTGTCTCCGATCTTGGCCATTTCCAACACGCACGGGAGGAGGACAAGACGAGGATCCTCTTCTTGTCCTTCGTGGACGACGCGCCACCGAGGCCGTTCCACCACGGCGACGTCTACCAGCAGGTGGAGGTGGCGCCACACTACCCGATGGGATTCAAGGCGGCGGCGGTCGCGCCGGATGGCGTCCCGCCGAGCTTGCTGAGGTTGAAGGGCTGGCAGGTGAGCAAGACCTCGCGTACGAGCTACGACGGCCTCGCCGACCACGCGCACTGGGTAGACTGGCCGCTCCGCCGCCGGATGCCAGACCTCGACGGCTTCGGCATCGGCGCGGGAGGCGGCTCGCCGGCCGCCGTCGTCGGCAAATGGTACTGCCCGTTCATGTTCATCAGAGACGGCGAGCGGCGGCTCAAGGACCAGGTCAACCGGTGCATGTTCTACGAGATGACGCTGGAGCAGAGGTGGGAGGAGATATACAGCTGCGACAACACTCACCGGGGCAGCATCAGCGGCAAGCAGCCGGATGATGAGGTCAAGGTGAACGTGACGGTGCGCCGGTCGACGGCGCTGCTAGGCGGCACCGGTGCAGTAGTGCAAGAAGGTGGGCCTCAGGAGGTCGACGGGGTGATGTGGTTTCGACCGGCGGCGCCGCCGCCGAACTCTGGCGCGGCAGGTGGAGTTGGGGTGGACATGGTGGTGTGGGAGAAGATGAAGTGGGAGCTGGAGAGAGGAGGGTGGGTCGACGGTAATGGCGACGTGGAGAGTATCGAGAGGGTGGAGAGGCGTGAGGCGCTGGGTCGGTACTGGGACAAACCAAATGGGTATGAGCAAACGATGTACTACTGCAACTATCGAATTTTAATTGTTTCTGTTAATGTATGA
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| Protein seq | MMTPPKTLRIEDSSSSGTGDGSAPRQAVVERVVPNSSVVELPMLTRANYHQWASVMRVSLEALELWDVVEAVTNDRAKDRRALAAILRAVPSEMKAGLAVKTSAKEAWDSVKKMRAGDDRVKSACMQRLMKEFENMAFRDGETVGDFAMRINRLTASLRDLGEEMEDSRMVKKVLRVVPKRLKQVAVAIEMLADMDVMSVEELVGRLQVAEDADAEDHERVREGGAKDDGRNSDNDDGGSSVSSEANWRPRRPGGKCYNCGVRGHLSRDCRKPRKEEALLTSADDEPTLLENREKPAFVARAFVAIVKLHKLCYSLSCLCVSDLGHFQHAREEDKTRILFLSFVDDAPPRPFHHGDVYQQVEVAPHYPMGFKAAAVAPDGVPPSLLRLKGWQVSKTSRTSYDGLADHAHWVDWPLRRRMPDLDGFGIGAGGGSPAAVVGKWYCPFMFIRDGERRLKDQVNRCMFYEMTLEQRWEEIYSCDNTHRGSISGKQPDDEVKVNVTVRRSTALLGGTGAVVQEGGPQEVDGVMWFRPAAPPPNSGAAGGVGVDMVVWEKMKWELERGGWVDGNGDVESIERVERREALGRYWDKPNGYEQTMYYCNYRILIVSVNV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g31920 | LOC_Os08g31920.1 | Chr08 | 19787212 | 19789539 | - | MSU_osa1r7 | ||
| CDS seq | ATGATGACGCCGCCGAAGACGCTTCGCATCGAGGACTCGAGCTCCAGCGGCACCGGTGATGGCAGCGCACCGCGTCAGGCCGTGGTGGAGCGCGTCGTGCCCAATTCCAGCGTCGTGGAGCTGCCGATGCTAACCAGGGCTAACTATCATCAGTGGGCCTCGGTTATGCGGGTGAGCTTGGAGGCGTTGGAGTTGTGGGACGTGGTGGAGGCGGTCACCAACGACCGCGCTAAGGATCGGCGGGCGTTGGCCGCCATCTTGCGTGCGGTGCCATCGGAGATGAAGGCCGGGCTCGCCGTGAAGACGTCGGCGAAGGAGGCGTGGGACTCGGTGAAGAAGATGCGAGCCGGCGACGACCGCGTGAAATCGGCGTGCATGCAACGCCTCATGAAGGAGTTTGAGAACATGGCGTTCCGCGACGGGGAGACCGTTGGTGACTTTGCGATGCGCATCAATAGGCTCACCGCGAGCCTGCGCGACCTCGGGGAGGAGATGGAAGACAGTCGCATGGTGAAGAAAGTCCTGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCGCGGTGGCGATTGAGATGCTCGCGGACATGGATGTCATGTCCGTCGAGGAGCTCGTCGGGCGCCTGCAAGTGGCGGAGGACGCCGACGCTGAAGATCACGAGCGCGTGCGTGAGGGCGGCGCCAAGGATGACGGCCGAAACAGTGACAATGACGACGGCGGCAGCAGCGTGAGCTCGGAGGCAAACTGGCGTCCGCGCCGTCCAGGAGGGAAGTGCTACAACTGTGGTGTTCGTGGCCATCTCTCCCGAGATTGCCGCAAGCCAAGGAAGGAGGAGGCGCTCCTCACCTCTGCCGACGACGAGCCGACGCTCCTTGAAAATAGAGAAAAGCCGGCATTCGTTGCCAGGGCGTTCGTTGCCATTGTCAAGCTTCACAAGCTCTGCTACTCACTCTCGTGTTTGTGTGTCTCCGATCTTGGCCATTTCCAACACGCACGGGAGGAGGACAAGACGAGGATCCTCTTCTTGTCCTTCGTGGACGACGCGCCACCGAGGCCGTTCCACCACGGCGACGTCTACCAGCAGGTGGAGGTGGCGCCACACTACCCGATGGGATTCAAGGCGGCGGCGGTCGCGCCGGATGGCGTCCCGCCGAGCTTGCTGAGGTTGAAGGGCTGGCAGGTGAGCAAGACCTCGCGTACGAGCTACGACGGCCTCGCCGACCACGCGCACTGGGTAGACTGGCCGCTCCGCCGCCGGATGCCAGACCTCGACGGCTTCGGCATCGGCGCGGGAGGCGGCTCGCCGGCCGCCGTCGTCGGCAAATGGTACTGCCCGTTCATGTTCATCAGAGACGGCGAGCGGCGGCTCAAGGACCAGGTCAACCGGTGCATGTTCTACGAGATGACGCTGGAGCAGAGGTGGGAGGAGATATACAGCTGCGACAACACTCACCGGGGCAGCATCAGCGGCAAGCAGCCGGATGATGAGGTCAAGGTGAACGTGACGGTGCGCCGGTCGACGGCGCTGCTAGGCGGCACCGGTGCAGTAGTGCAAGAAGGTGGGCCTCAGGAGGTCGACGGGGTGATGTGGTTTCGACCGGCGGCGCCGCCGCCGAACTCTGGCGCGGCAGGTGGAGTTGGGGTGGACATGGTGGTGTGGGAGAAGATGAAGTGGGAGCTGGAGAGAGGAGGGTGGGTCGACGGTAATGGCGACGTGGAGAGTATCGAGAGGGTGGAGAGGCGTGAGGCGCTGGGTCGGTACTGGGACAAACCAAATGGGTATGAGCAAACGATGTACTACTGCAACTATCGAATTTTAATTGTTTCTGTTAATGTATGA
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| Protein seq | MMTPPKTLRIEDSSSSGTGDGSAPRQAVVERVVPNSSVVELPMLTRANYHQWASVMRVSLEALELWDVVEAVTNDRAKDRRALAAILRAVPSEMKAGLAVKTSAKEAWDSVKKMRAGDDRVKSACMQRLMKEFENMAFRDGETVGDFAMRINRLTASLRDLGEEMEDSRMVKKVLRVVPKRLKQVAVAIEMLADMDVMSVEELVGRLQVAEDADAEDHERVREGGAKDDGRNSDNDDGGSSVSSEANWRPRRPGGKCYNCGVRGHLSRDCRKPRKEEALLTSADDEPTLLENREKPAFVARAFVAIVKLHKLCYSLSCLCVSDLGHFQHAREEDKTRILFLSFVDDAPPRPFHHGDVYQQVEVAPHYPMGFKAAAVAPDGVPPSLLRLKGWQVSKTSRTSYDGLADHAHWVDWPLRRRMPDLDGFGIGAGGGSPAAVVGKWYCPFMFIRDGERRLKDQVNRCMFYEMTLEQRWEEIYSCDNTHRGSISGKQPDDEVKVNVTVRRSTALLGGTGAVVQEGGPQEVDGVMWFRPAAPPPNSGAAGGVGVDMVVWEKMKWELERGGWVDGNGDVESIERVERREALGRYWDKPNGYEQTMYYCNYRILIVSVNV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0413500 | SBH | 9.267802 | 6.261284 | 3.502996 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31880 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0413500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015910 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015720 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015650 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016040 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015770 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0315500 | RBH | 3.1370625 | 2.334589 | 1.3304675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015730 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0336700 | SBH | 0 | 0 | 0.0309355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015330 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016070 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015590 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015700 | SBH | 0.0 | 0.0 | 0.0 |
