Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_08g0016040 OGI:08058170 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr08:20704695-20705583
Gene Symbol -
DNA seq

tcagaaccacatcaccccgtcgaccacctgaggcccaccttcttgcactactgcaccggtgccgcccagcagcgccgtcgaccggcgcaccgtcacgttcaccttgacctcatcatccggctgcttgccgctgatgctgccccagtgagtgttgtcgcagctgtatatctcctcccacctctgctccagcgtcatctcgtagaacatgcaccggttgacctggtccttgagccgcctctcgccgtctctgatgaacatgaacgggcagtaccacttgccgacgacggcggccggcgagcctcccgcgccgatggcgaagccgtcgaggtcaggcatccggcgacggagcggccagtctatcccgtgcgcgtcgtcactgaggccgtcgtagctcgtacgcatggccttgctcacctcccagcccttcctcctcagcaagctcggcgggatgccatccggcgcgaccgccaccgccttgaatcccctcaggcagtgtggcgcttgcgccacggccaccacctccacctgctggtagatgtcgccgtggtggaatggcctcggtggcgcatcgtccacaaaggagaagaagaggatccttgtcttgtcctcctcccgtgagcacgccaacaccatcccagcgtggtggccaatggccttgacgacgtagtagcggccggccgacaacggctcgccgacgatggggacgaagaggacaatgtcgtcttcacccacatcaagccttcatcaacaatccgcagcaaacggtggcccgctcgacggccgcctcgtcctccacgacgaggaacccggatcctgggccctccggcggtcgctccgccgcggcgtctgggttgtccaggtaccgtgacaacggccttgtcacgtacat

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CDS seq

atgtacgtgacaaggccgttgtcacggtacctggacaacccagacgccgcggcggagcgaccgccggagggcccaggatccgggttcctcgtcgtggaggacgaggcggccgtcgagcgggccaccgtttgctgcggattgcttgatgtgggtgaagacgacattgtcctcttcgtccccatcgtcggcgagccgttgtcggccggccgctactacgtcgtcaaggccattggccaccacgctgggatggtgttggcgtgctcacgggaggaggacaagacaaggatcctcttcttctcctttgtggacgatgcgccaccgaggccattccaccacggcgacatctaccagcaggtggaggtggtggccgtggcgcaagcgccacactgcctgaggggattcaaggcggtggcggtcgcgccggatggcatcccgccgagcttgctgaggaggaagggctgggaggtgagcaaggccatgcgtacgagctacgacggcctcagtgacgacgcgcacgggatagactggccgctccgtcgccggatgcctgacctcgacggcttcgccatcggcgcgggaggctcgccggccgccgtcgtcggcaagtggtactgcccgttcatgttcatcagagacggcgagaggcggctcaaggaccaggtcaaccggtgcatgttctacgagatgacgctggagcagaggtgggaggagatatacagctgcgacaacactcactggggcagcatcagcggcaagcagccggatgatgaggtcaaggtgaacgtgacggtgcgccggtcgacggcgctgctgggcggcaccggtgcagtagtgcaagaaggtgggcctcaggtggtcgacggggtgatgtggttctga

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Protein seq

MYVTRPLSRYLDNPDAAAERPPEGPGSGFLVVEDEAAVERATVCCGLLDVGEDDIVLFVPIVGEPLSAGRYYVVKAIGHHAGMVLACSREEDKTRILFFSFVDDAPPRPFHHGDIYQQVEVVAVAQAPHCLRGFKAVAVAPDGIPPSLLRRKGWEVSKAMRTSYDGLSDDAHGIDWPLRRRMPDLDGFAIGAGGSPAAVVGKWYCPFMFIRDGERRLKDQVNRCMFYEMTLEQRWEEIYSCDNTHWGSISGKQPDDEVKVNVTVRRSTALLGGTGAVVQEGGPQVVDGVMWF

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_08g0016040 OsARC_08g0016040.01 Chr08 20704695 20705583 - NAM
CDS seq

atgtacgtgacaaggccgttgtcacggtacctggacaacccagacgccgcggcggagcgaccgccggagggcccaggatccgggttcctcgtcgtggaggacgaggcggccgtcgagcgggccaccgtttgctgcggattgcttgatgtgggtgaagacgacattgtcctcttcgtccccatcgtcggcgagccgttgtcggccggccgctactacgtcgtcaaggccattggccaccacgctgggatggtgttggcgtgctcacgggaggaggacaagacaaggatcctcttcttctcctttgtggacgatgcgccaccgaggccattccaccacggcgacatctaccagcaggtggaggtggtggccgtggcgcaagcgccacactgcctgaggggattcaaggcggtggcggtcgcgccggatggcatcccgccgagcttgctgaggaggaagggctgggaggtgagcaaggccatgcgtacgagctacgacggcctcagtgacgacgcgcacgggatagactggccgctccgtcgccggatgcctgacctcgacggcttcgccatcggcgcgggaggctcgccggccgccgtcgtcggcaagtggtactgcccgttcatgttcatcagagacggcgagaggcggctcaaggaccaggtcaaccggtgcatgttctacgagatgacgctggagcagaggtgggaggagatatacagctgcgacaacactcactggggcagcatcagcggcaagcagccggatgatgaggtcaaggtgaacgtgacggtgcgccggtcgacggcgctgctgggcggcaccggtgcagtagtgcaagaaggtgggcctcaggtggtcgacggggtgatgtggttctga

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Protein seq

MYVTRPLSRYLDNPDAAAERPPEGPGSGFLVVEDEAAVERATVCCGLLDVGEDDIVLFVPIVGEPLSAGRYYVVKAIGHHAGMVLACSREEDKTRILFFSFVDDAPPRPFHHGDIYQQVEVVAVAQAPHCLRGFKAVAVAPDGIPPSLLRRKGWEVSKAMRTSYDGLSDDAHGIDWPLRRRMPDLDGFAIGAGGSPAAVVGKWYCPFMFIRDGERRLKDQVNRCMFYEMTLEQRWEEIYSCDNTHWGSISGKQPDDEVKVNVTVRRSTALLGGTGAVVQEGGPQVVDGVMWF

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0413500 RBH 9.267802 6.261284 3.502996
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g31910 RBH 4.071049 2.830512 0.568328
Nipponbare | IRGSP 1.0 | RAP-db Os08g0413500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0015910 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0015780 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0015710 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0016020 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0015830 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0315500 SBH 3.1370625 2.334589 1.3304675
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0015790 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0336700 RBH 0 0 0.0309355
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0015270 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0015440 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0015340 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0016070 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0015460 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G015590 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0015700 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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