Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0015270 | OGI:08058170 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:20564110-20567241 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tctctaacgattgatttaaacaactgttacagatatagtaatatgtaacgactctctttaagctatcatacattaacagaaacaattaaaattcgatagttgcagtagtacatcgtttgctcatacccatttggtttgtcccagtaccgacccagcgcctcacgcctctccaccctctcgatactctccacgtcgccattaccgtcgacccaccctcctctctccagctcccacttcatcttctcccacaccaccatgtccaccccaactccacctgccgcgccagagttcggcggcggcgccgccggtcgaaaccacatcaccccgtcgacctcctgaggcccaccttcttgcactactgcaccggtgccgcctagcagcgccgtcgaccggcgcaccgtcacgttcaccttgacctcatcatccggctgcttgccgctgatgctgccccggtgactgttgtcgcagctgtatatctcctcccacctctgctccagcgtcatctcgtagaacatgcaccggttgacctggtccttgagccgccgctcgccgtctctgatgaacatgaacgggcagtaccacttgccgacgacggcggccggcgagccgcctcccgcgccgatgccgaagccgtcgaggtctggcatccggcggcggagcggccagtctaccccgtgcgcgtcgtcggcgaggccgtcgtagctcgtacgcgaggtcttgctcacctgccagcccttcaacctcagcaagctcggcgggacgccatccggcgcgaccgccgccgccttgaatcccatcgggtagtgtggcgccacctccacctgctggtagacgtcgccgtggtggaacggcctcggtggcgcgtcgtccacgaaggacaagaagaggatcctcgtcttgtcctcctcccgtgcgtgttggaaatggccaagatcggagacacacacaaacacgagagtgagtagcagagcttgtgaagcttgacaatggcaacgaacgccctggcaacgaatgccggtttttctctattttcactcgggtgatcaaacaacaggatgaacatatgcttatataggcccagggtgacgcacaaatggagcacgaactccttccccggcctttgctcgcacgatccgcacgtcccggctcacgccatgcatgagcacaaactcagcgcacgacgcggccgccagcgtccgcgcacgacgccacgctctccaactgaacccgatacacacgctcgcagctagctagcctgcgctaaactcggacgaacctccttgcgacggacgcgttaacaacaaacacacacacgatgcacgcgaactgacctgaacacacacggtcaggtttatttcctaacaatcaccccctaaacctgacctacaggagcgtcggctcgtcgtcggcagaggtgaggagcgcctcctccttccttggcttgcggcaatctcgggagagatggccacgaacaccacagttgtagcacttccctcctggacggcgcggacgccagtttgcctccgagctcacgctgctgccgccgtcgtcattgtcactgtttcggccgtcatccttggcgccgccctcacgcacgcgctccttgtcgcgacgttggcgccgacgtgcctcccactgctcctcggtgagaagtagctactcgccatgggcctccacgtgatcttcagcgtcggcgtcctccgccacttgcaggcgcccgacgagctcctcgacggacatgacatccatgtccgcgagcatctcaatcgccaccgcgacttgcttcaacctcttcgggaccacgcacaggaccttcttcaccatgcgactgtcttccatctcctccccgaggtcgcgcaggctcgcggtgagcctattgatgcgcatcgcaaagtcaccaacggtctccccgtcgcggaacgccatgttctcaaactccttcatgaggcgttgcatgcacgccgatttcacgcggtcgtcgccggctcgcatcttcttcaccgagtcccacgcctccttcgccgacgtcttcacggcgagcccggccttcatctccgatggcaccgcacgcaagatggcggccaacgcccgccgatccttagcgcggtcgttggtgaccgcctccaccacgtcccacaactccaacgcctccaagctcacccgcataaccaaggcccactgatgatagttagccctggttagcatcggcagctccacgacgctggaattgggcacgacgcgctccaccacggcctgacgcggtgcgctgccatcaccggtgccgctggagctcgagtcctcgatgcgaagcgtcttcggcggcgtcatcatctcccctctctaaactcgctctgataccaaatgttggaaatggccaagatcggagacacacacaaacacgagagtgagtagcagagcttgtgaagcttgacaatggcaacgaacgccctggcaacgaatgccggcttttctctattttcactcgggtgatcaaacaacaggatgaacatatgcttatataggcccagggtgacgcacaaatggagcacgaactccttccccggcctttgctcgcacgatccgcacgtcccggctcacgccatgcatgagcacaaactcagcgcacgacgcggccgccagcgtccgcgcacgacgccacgctcttcaactgaacccgatacacacgagctcgcagctagctagcctgcgctaaactcggacgaacctccttgcgacggacgcgttaacaacaaacacacacacgacgcacgcgaactgatctgaacacacgcggtcaggtttatttcctaacagtgcatacgccagcaccttcccggcgtggtggctgccggtggaccggtcgacgtagtagcagccggccgacaacggctcgccgacgacggggacgaagacgaccacgttgtcttcgcccatgtagagcctccagctctgagtgaaggggagggtgcgcacccgcgggtcatggcacaatccgcagcaaatggtggccgcctgctcgacggccgcctcgtcctccacgacgaggaacccggatcctgggccctccggcggtcgctccgccgcggcgtctgggttgtccaggtaccgtgacaacggccttgtcacgttcat
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| CDS seq | atgaacgtgacaaggccgttgtcacggtacctggacaacccagacgccgcggcggagcgaccgccggagggcccaggatccgggttcctcgtcgtggaggacgaggcggccgtcgagcaggcggccaccatttgctgcggattgtgccatgacccgcgggtgcgcaccctccccttcactcagagctggaggctctacatgggcgaagacaacgtggtcgtcttcgtccccgtcgtcggcgagccgttgtcggccggctgctactacgtcgaccggtccaccggcagccaccacgccgggaagggcgttcgttgccattgtcaagcttcacaagctctgctactcactctcgtgtttgtgtgtgtctccgatcttggccatttccaacacgcacgggaggaggacaagacgaggatcctcttcttgtccttcgtggacgacgcgccaccgaggccgttccaccacggcgacgtctaccagcaggtggaggtggcgccacactacccgatgggattcaaggcggcggcggtcgcgccggatggcgtcccgccgagcttgctgaggttgaagggctggcaggtgagcaagacctcgcgtacgagctacgacggcctcgccgacgacgcgcacggggtagactggccgctccgccgccggatgccagacctcgacggcttcggcatcggcgcgggaggcggctcgccggccgccgtcgtcggcaagtggtactgcccgttcatgttcatcagagacggcgagcggcggctcaaggaccaggtcaaccggtgcatgttctacgagatgacgctggagcagaggtgggaggagatatacagctgcgacaacagtcaccggggcagcatcagcggcaagcagccggatgatgaggtcaaggtgaacgtgacggtgcgccggtcgacggcgctgctaggcggcaccggtgcagtagtgcaagaaggtgggcctcaggaggtcgacggggtgatgtggtttcgaccggcggcgccgccgccgaactctggcgcggcaggtggagttggggtggacatggtggtgtgggagaagatgaagtgggagctggagagaggagggtgggtcgacggtaatggcgacgtggagagtatcgagagggtggagaggcgtgaggcgctgggtcggtactgggacaaaccaaatgggtatgagcaaacgatgtactactgcaactatcgaattttaattgtttctgttaatgtatga
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| Protein seq | MNVTRPLSRYLDNPDAAAERPPEGPGSGFLVVEDEAAVEQAATICCGLCHDPRVRTLPFTQSWRLYMGEDNVVVFVPVVGEPLSAGCYYVDRSTGSHHAGKGVRCHCQASQALLLTLVFVCVSDLGHFQHAREEDKTRILFLSFVDDAPPRPFHHGDVYQQVEVAPHYPMGFKAAAVAPDGVPPSLLRLKGWQVSKTSRTSYDGLADDAHGVDWPLRRRMPDLDGFGIGAGGGSPAAVVGKWYCPFMFIRDGERRLKDQVNRCMFYEMTLEQRWEEIYSCDNSHRGSISGKQPDDEVKVNVTVRRSTALLGGTGAVVQEGGPQEVDGVMWFRPAAPPPNSGAAGGVGVDMVVWEKMKWELERGGWVDGNGDVESIERVERREALGRYWDKPNGYEQTMYYCNYRILIVSVNV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0015270 | OsLima_08g0015270.01 | Chr08 | 20564110 | 20567241 | - | NAM | ||
| CDS seq | atgaacgtgacaaggccgttgtcacggtacctggacaacccagacgccgcggcggagcgaccgccggagggcccaggatccgggttcctcgtcgtggaggacgaggcggccgtcgagcaggcggccaccatttgctgcggattgtgccatgacccgcgggtgcgcaccctccccttcactcagagctggaggctctacatgggcgaagacaacgtggtcgtcttcgtccccgtcgtcggcgagccgttgtcggccggctgctactacgtcgaccggtccaccggcagccaccacgccgggaagggcgttcgttgccattgtcaagcttcacaagctctgctactcactctcgtgtttgtgtgtgtctccgatcttggccatttccaacacgcacgggaggaggacaagacgaggatcctcttcttgtccttcgtggacgacgcgccaccgaggccgttccaccacggcgacgtctaccagcaggtggaggtggcgccacactacccgatgggattcaaggcggcggcggtcgcgccggatggcgtcccgccgagcttgctgaggttgaagggctggcaggtgagcaagacctcgcgtacgagctacgacggcctcgccgacgacgcgcacggggtagactggccgctccgccgccggatgccagacctcgacggcttcggcatcggcgcgggaggcggctcgccggccgccgtcgtcggcaagtggtactgcccgttcatgttcatcagagacggcgagcggcggctcaaggaccaggtcaaccggtgcatgttctacgagatgacgctggagcagaggtgggaggagatatacagctgcgacaacagtcaccggggcagcatcagcggcaagcagccggatgatgaggtcaaggtgaacgtgacggtgcgccggtcgacggcgctgctaggcggcaccggtgcagtagtgcaagaaggtgggcctcaggaggtcgacggggtgatgtggtttcgaccggcggcgccgccgccgaactctggcgcggcaggtggagttggggtggacatggtggtgtgggagaagatgaagtgggagctggagagaggagggtgggtcgacggtaatggcgacgtggagagtatcgagagggtggagaggcgtgaggcgctgggtcggtactgggacaaaccaaatgggtatgagcaaacgatgtactactgcaactatcgaattttaattgtttctgttaatgtatga
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| Protein seq | MNVTRPLSRYLDNPDAAAERPPEGPGSGFLVVEDEAAVEQAATICCGLCHDPRVRTLPFTQSWRLYMGEDNVVVFVPVVGEPLSAGCYYVDRSTGSHHAGKGVRCHCQASQALLLTLVFVCVSDLGHFQHAREEDKTRILFLSFVDDAPPRPFHHGDVYQQVEVAPHYPMGFKAAAVAPDGVPPSLLRLKGWQVSKTSRTSYDGLADDAHGVDWPLRRRMPDLDGFGIGAGGGSPAAVVGKWYCPFMFIRDGERRLKDQVNRCMFYEMTLEQRWEEIYSCDNSHRGSISGKQPDDEVKVNVTVRRSTALLGGTGAVVQEGGPQEVDGVMWFRPAAPPPNSGAAGGVGVDMVVWEKMKWELERGGWVDGNGDVESIERVERREALGRYWDKPNGYEQTMYYCNYRILIVSVNV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0413500 | SBH | 9.267802 | 6.261284 | 3.502996 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31920 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0413500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015910 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015710 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015830 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0315500 | RBH | 3.1370625 | 2.334589 | 1.3304675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0336700 | RBH | 0 | 0 | 0.0309355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015260 | RBH | 0.503236 | 0.032472 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015330 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015590 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015700 | RBH | 0.0 | 0.0 | 0.0 |
