Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os08g31880 OGI:08058170 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr08:19762998-19764227
Gene Symbol -
DNA seq

TCATACCCATTTGGTTCTAATCTTGCCGGTGTGCCTGAAACCACAGGTGAGCGCAACGCTGCCGTCCATCCTCCTCAGCACGAAGCTCTCAAGCAGCAGGTAGCACCCAAACTTGTCCCACTGACCCGGCCTCGCCTCACGCCTCTCCCCCCTCTCGATACTCTCCACGTCGCCATTACCGGCAACCCACCCTCCTCTCTCCAGCTCCCACTTCATCTTCTCCCACACCACCATGTCCAGCCCAACTCCACCTGCCGTGCCAGAGTTCGTCGGCGGCGCCGCCGGTCGGAACCACATCACCCCGTCGACCATCTGAGGCCCGCCTCCTCGCACCGCGTCGGTGCCGCCCAGCAGCGCCGTCGACCGGCGCACCGTCGCGCTCACCTCAACCTCATTGTCCTTGCTGCTGGTACTCCTCCTGCCTCGATGGGCGTTGTCTCGGGTGTATATCTCCTCCCACCTCTGCTCCAGCGTCATCTCGTAGAACATGCACCGCTTGACCTGATCCTTGAGCCGCTGCTCGCCGCCGTCGTTGATGAACATGAACGGGCAGTACCACCTGCCGACGACGACGGGCGGCGAGCCACCTACGCCGACGTCGAAGCTGTCGAGGTCAGGCATCCGGCGGCGGAGCGGCCAGTCCGTCCCGTGCGCCGCGTCGGCGAGGTCGTAGCTCGTGGACGCCGAGGTGTGGACCTTCCACGCCTCCCTCCTCAGGTAGCCCGGCGGGATGCCGTCCGGCGCGACCGCCACCGCCGTGAAACCCCTCCCGCGCGGCGGCAGCCGCAGCACCTCCACCTGCTGGTAGACGTCGCCGCGGTCGAACGGCCGCGGCGGCACGTCGTTCACCAAGGACCAGAGGCCGCAGCACGTCACCATGTCCTCCTCCCTCGAGCACGCCGACACCTTCCCGGCGTGCCTCCCCGTGGCCCGGGCGGCGTAGTAGCGGCCGGACGACAGCGGCTGGCCGACGACGGGCACGAACACGACGTCGTCGCGGTGCGTGTAGGTGAGACGGTTCCTGCCGGCGCCGATGCTGGCGGTGTACTCCACCTCGAGCTGCCGGCTCTGCGGGAACGGGAGGCCGTACACCTGCCTGTCCGCCCATAAGCCCCACCACCGCGTCGCCCGCGCGACGGCCACCTCGTCCTCCACCACGAGGAAACCGGAGCCCGGGTCCTCCGGCGGCGGCTCCGCCGCGGCGTCCGGGTCGTCCTGGTACCGCGACAT

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CDS seq

ATGTCGCGGTACCAGGACGACCCGGACGCCGCGGCGGAGCCGCCGCCGGAGGACCCGGGCTCCGGTTTCCTCGTGGTGGAGGACGAGGTGGCCGTCGCGCGGGCGACGCGGTGGTGGGGCTTATGGGCGGACAGGCAGGTGTACGGCCTCCCGTTCCCGCAGAGCCGGCAGCTCGAGGTGGAGTACACCGCCAGCATCGGCGCCGGCAGGAACCGTCTCACCTACACGCACCGCGACGACGTCGTGTTCGTGCCCGTCGTCGGCCAGCCGCTGTCGTCCGGCCGCTACTACGCCGCCCGGGCCACGGGGAGGCACGCCGGGAAGGTGTCGGCGTGCTCGAGGGAGGAGGACATGGTGACGTGCTGCGGCCTCTGGTCCTTGGTGAACGACGTGCCGCCGCGGCCGTTCGACCGCGGCGACGTCTACCAGCAGGTGGAGGTGCTGCGGCTGCCGCCGCGCGGGAGGGGTTTCACGGCGGTGGCGGTCGCGCCGGACGGCATCCCGCCGGGCTACCTGAGGAGGGAGGCGTGGAAGGTCCACACCTCGGCGTCCACGAGCTACGACCTCGCCGACGCGGCGCACGGGACGGACTGGCCGCTCCGCCGCCGGATGCCTGACCTCGACAGCTTCGACGTCGGCGTAGGTGGCTCGCCGCCCGTCGTCGTCGGCAGGTGGTACTGCCCGTTCATGTTCATCAACGACGGCGGCGAGCAGCGGCTCAAGGATCAGGTCAAGCGGTGCATGTTCTACGAGATGACGCTGGAGCAGAGGTGGGAGGAGATATACACCCGAGACAACGCCCATCGAGGCAGGAGGAGTACCAGCAGCAAGGACAATGAGGTTGAGGTGAGCGCGACGGTGCGCCGGTCGACGGCGCTGCTGGGCGGCACCGACGCGGTGCGAGGAGGCGGGCCTCAGATGGTCGACGGGGTGATGTGGTTCCGACCGGCGGCGCCGCCGACGAACTCTGGCACGGCAGGTGGAGTTGGGCTGGACATGGTGGTGTGGGAGAAGATGAAGTGGGAGCTGGAGAGAGGAGGGTGGGTTGCCGGTAATGGCGACGTGGAGAGTATCGAGAGGGGGGAGAGGCGTGAGGCGAGGCCGGGTCAGTGGGACAAGTTTGGGTGCTACCTGCTGCTTGAGAGCTTCGTGCTGAGGAGGATGGACGGCAGCGTTGCGCTCACCTGTGGTTTCAGGCACACCGGCAAGATTAGAACCAAATGGGTATGA

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Protein seq

MSRYQDDPDAAAEPPPEDPGSGFLVVEDEVAVARATRWWGLWADRQVYGLPFPQSRQLEVEYTASIGAGRNRLTYTHRDDVVFVPVVGQPLSSGRYYAARATGRHAGKVSACSREEDMVTCCGLWSLVNDVPPRPFDRGDVYQQVEVLRLPPRGRGFTAVAVAPDGIPPGYLRREAWKVHTSASTSYDLADAAHGTDWPLRRRMPDLDSFDVGVGGSPPVVVGRWYCPFMFINDGGEQRLKDQVKRCMFYEMTLEQRWEEIYTRDNAHRGRRSTSSKDNEVEVSATVRRSTALLGGTDAVRGGGPQMVDGVMWFRPAAPPTNSGTAGGVGLDMVVWEKMKWELERGGWVAGNGDVESIERGERREARPGQWDKFGCYLLLESFVLRRMDGSVALTCGFRHTGKIRTKWV

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os08g31880 LOC_Os08g31880.1 Chr08 19762998 19764227 - MSU_osa1r7
CDS seq

ATGTCGCGGTACCAGGACGACCCGGACGCCGCGGCGGAGCCGCCGCCGGAGGACCCGGGCTCCGGTTTCCTCGTGGTGGAGGACGAGGTGGCCGTCGCGCGGGCGACGCGGTGGTGGGGCTTATGGGCGGACAGGCAGGTGTACGGCCTCCCGTTCCCGCAGAGCCGGCAGCTCGAGGTGGAGTACACCGCCAGCATCGGCGCCGGCAGGAACCGTCTCACCTACACGCACCGCGACGACGTCGTGTTCGTGCCCGTCGTCGGCCAGCCGCTGTCGTCCGGCCGCTACTACGCCGCCCGGGCCACGGGGAGGCACGCCGGGAAGGTGTCGGCGTGCTCGAGGGAGGAGGACATGGTGACGTGCTGCGGCCTCTGGTCCTTGGTGAACGACGTGCCGCCGCGGCCGTTCGACCGCGGCGACGTCTACCAGCAGGTGGAGGTGCTGCGGCTGCCGCCGCGCGGGAGGGGTTTCACGGCGGTGGCGGTCGCGCCGGACGGCATCCCGCCGGGCTACCTGAGGAGGGAGGCGTGGAAGGTCCACACCTCGGCGTCCACGAGCTACGACCTCGCCGACGCGGCGCACGGGACGGACTGGCCGCTCCGCCGCCGGATGCCTGACCTCGACAGCTTCGACGTCGGCGTAGGTGGCTCGCCGCCCGTCGTCGTCGGCAGGTGGTACTGCCCGTTCATGTTCATCAACGACGGCGGCGAGCAGCGGCTCAAGGATCAGGTCAAGCGGTGCATGTTCTACGAGATGACGCTGGAGCAGAGGTGGGAGGAGATATACACCCGAGACAACGCCCATCGAGGCAGGAGGAGTACCAGCAGCAAGGACAATGAGGTTGAGGTGAGCGCGACGGTGCGCCGGTCGACGGCGCTGCTGGGCGGCACCGACGCGGTGCGAGGAGGCGGGCCTCAGATGGTCGACGGGGTGATGTGGTTCCGACCGGCGGCGCCGCCGACGAACTCTGGCACGGCAGGTGGAGTTGGGCTGGACATGGTGGTGTGGGAGAAGATGAAGTGGGAGCTGGAGAGAGGAGGGTGGGTTGCCGGTAATGGCGACGTGGAGAGTATCGAGAGGGGGGAGAGGCGTGAGGCGAGGCCGGGTCAGTGGGACAAGTTTGGGTGCTACCTGCTGCTTGAGAGCTTCGTGCTGAGGAGGATGGACGGCAGCGTTGCGCTCACCTGTGGTTTCAGGCACACCGGCAAGATTAGAACCAAATGGGTATGA

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Protein seq

MSRYQDDPDAAAEPPPEDPGSGFLVVEDEVAVARATRWWGLWADRQVYGLPFPQSRQLEVEYTASIGAGRNRLTYTHRDDVVFVPVVGQPLSSGRYYAARATGRHAGKVSACSREEDMVTCCGLWSLVNDVPPRPFDRGDVYQQVEVLRLPPRGRGFTAVAVAPDGIPPGYLRREAWKVHTSASTSYDLADAAHGTDWPLRRRMPDLDSFDVGVGGSPPVVVGRWYCPFMFINDGGEQRLKDQVKRCMFYEMTLEQRWEEIYTRDNAHRGRRSTSSKDNEVEVSATVRRSTALLGGTDAVRGGGPQMVDGVMWFRPAAPPTNSGTAGGVGLDMVVWEKMKWELERGGWVAGNGDVESIERGERREARPGQWDKFGCYLLLESFVLRRMDGSVALTCGFRHTGKIRTKWV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0413100 RBH 0.000000 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g31890 RBH 0.000000 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os08g0413100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0015900 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0015760 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0015690 SBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0016030 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0015810 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0315600 RBH 0.021271 0.508039 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0015770 SBH 0.0 0.128216 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0336400 SBH 0.009408 0.200968 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0015260 RBH 0.503236 0.032472 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0015430 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0015310 SBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0016050 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0015450 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G015570 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0015680 SBH 0.0 3.149456 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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