Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0413100 | OGI:08058170 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:19762998-19764245 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATACCCATTTGGTTCTAATCTTGCCGGTGTGCCTGAAACCACAGGTGAGCGCAACGCTGCCGTCCATCCTCCTCAGCACGAAGCTCTCAAGCAGCAGGTAGCACCCAAACTTGTCCCACTGACCCGGCCTCGCCTCACGCCTCTCCCCCCTCTCGATACTCTCCACGTCGCCATTACCGGCAACCCACCCTCCTCTCTCCAGCTCCCACTTCATCTTCTCCCACACCACCATGTCCAGCCCAACTCCACCTGCCGTGCCAGAGTTCGTCGGCGGCGCCGCCGGTCGGAACCACATCACCCCGTCGACCATCTGAGGCCCGCCTCCTCGCACCGCGTCGGTGCCGCCCAGCAGCGCCGTCGACCGGCGCACCGTCGCGCTCACCTCAACCTCATTGTCCTTGCTGCTGGTACTCCTCCTGCCTCGATGGGCGTTGTCTCGGGTGTATATCTCCTCCCACCTCTGCTCCAGCGTCATCTCGTAGAACATGCACCGCTTGACCTGATCCTTGAGCCGCTGCTCGCCGCCGTCGTTGATGAACATGAACGGGCAGTACCACCTGCCGACGACGACGGGCGGCGAGCCACCTACGCCGACGTCGAAGCTGTCGAGGTCAGGCATCCGGCGGCGGAGCGGCCAGTCCGTCCCGTGCGCCGCGTCGGCGAGGTCGTAGCTCGTGGACGCCGAGGTGTGGACCTTCCACGCCTCCCTCCTCAGGTAGCCCGGCGGGATGCCGTCCGGCGCGACCGCCACCGCCGTGAAACCCCTCCCGCGCGGCGGCAGCCGCAGCACCTCCACCTGCTGGTAGACGTCGCCGCGGTCGAACGGCCGCGGCGGCACGTCGTTCACCAAGGACCAGAGGCCGCAGCACGTCACCATGTCCTCCTCCCTCGAGCACGCCGACACCTTCCCGGCGTGCCTCCCCGTGGCCCGGGCGGCGTAGTAGCGGCCGGACGACAGCGGCTGGCCGACGACGGGCACGAACACGACGTCGTCGCGGTGCGTGTAGGTGAGACGGTTCCTGCCGGCGCCGATGCTGGCGGTGTACTCCACCTCGAGCTGCCGGCTCTGCGGGAACGGGAGGCCGTACACCTGCCTGTCCGCCCATAAGCCCCACCACCGCGTCGCCCGCGCGACGGCCACCTCGTCCTCCACCACGAGGAAACCGGAGCCCGGGTCCTCCGGCGGCGGCTCCGCCGCGGCGTCCGGGTCGTCCTGGTACCGCGACATCGGCCTCGTCACGTACAT
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| CDS seq | ATGTACGTGACGAGGCCGATGTCGCGGTACCAGGACGACCCGGACGCCGCGGCGGAGCCGCCGCCGGAGGACCCGGGCTCCGGTTTCCTCGTGGTGGAGGACGAGGTGGCCGTCGCGCGGGCGACGCGGTGGTGGGGCTTATGGGCGGACAGGCAGGTGTACGGCCTCCCGTTCCCGCAGAGCCGGCAGCTCGAGGTGGAGTACACCGCCAGCATCGGCGCCGGCAGGAACCGTCTCACCTACACGCACCGCGACGACGTCGTGTTCGTGCCCGTCGTCGGCCAGCCGCTGTCGTCCGGCCGCTACTACGCCGCCCGGGCCACGGGGAGGCACGCCGGGAAGGTGTCGGCGTGCTCGAGGGAGGAGGACATGGTGACGTGCTGCGGCCTCTGGTCCTTGGTGAACGACGTGCCGCCGCGGCCGTTCGACCGCGGCGACGTCTACCAGCAGGTGGAGGTGCTGCGGCTGCCGCCGCGCGGGAGGGGTTTCACGGCGGTGGCGGTCGCGCCGGACGGCATCCCGCCGGGCTACCTGAGGAGGGAGGCGTGGAAGGTCCACACCTCGGCGTCCACGAGCTACGACCTCGCCGACGCGGCGCACGGGACGGACTGGCCGCTCCGCCGCCGGATGCCTGACCTCGACAGCTTCGACGTCGGCGTAGGTGGCTCGCCGCCCGTCGTCGTCGGCAGGTGGTACTGCCCGTTCATGTTCATCAACGACGGCGGCGAGCAGCGGCTCAAGGATCAGGTCAAGCGGTGCATGTTCTACGAGATGACGCTGGAGCAGAGGTGGGAGGAGATATACACCCGAGACAACGCCCATCGAGGCAGGAGGAGTACCAGCAGCAAGGACAATGAGGTTGAGGTGAGCGCGACGGTGCGCCGGTCGACGGCGCTGCTGGGCGGCACCGACGCGGTGCGAGGAGGCGGGCCTCAGATGGTCGACGGGGTGATGTGGTTCCGACCGGCGGCGCCGCCGACGAACTCTGGCACGGCAGGTGGAGTTGGGCTGGACATGGTGGTGTGGGAGAAGATGAAGTGGGAGCTGGAGAGAGGAGGGTGGGTTGCCGGTAATGGCGACGTGGAGAGTATCGAGAGGGGGGAGAGGCGTGAGGCGAGGCCGGGTCAGTGGGACAAGTTTGGGTGCTACCTGCTGCTTGAGAGCTTCGTGCTGAGGAGGATGGACGGCAGCGTTGCGCTCACCTGTGGTTTCAGGCACACCGGCAAGATTAGAACCAAATGGGTATGA
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| Protein seq | MYVTRPMSRYQDDPDAAAEPPPEDPGSGFLVVEDEVAVARATRWWGLWADRQVYGLPFPQSRQLEVEYTASIGAGRNRLTYTHRDDVVFVPVVGQPLSSGRYYAARATGRHAGKVSACSREEDMVTCCGLWSLVNDVPPRPFDRGDVYQQVEVLRLPPRGRGFTAVAVAPDGIPPGYLRREAWKVHTSASTSYDLADAAHGTDWPLRRRMPDLDSFDVGVGGSPPVVVGRWYCPFMFINDGGEQRLKDQVKRCMFYEMTLEQRWEEIYTRDNAHRGRRSTSSKDNEVEVSATVRRSTALLGGTDAVRGGGPQMVDGVMWFRPAAPPTNSGTAGGVGLDMVVWEKMKWELERGGWVAGNGDVESIERGERREARPGQWDKFGCYLLLESFVLRRMDGSVALTCGFRHTGKIRTKWV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0413100 | OsNip_08t0413100-00 | Chr08 | 19762998 | 19764245 | - | RAP2018-11-26 | ||
| CDS seq | ATGTACGTGACGAGGCCGATGTCGCGGTACCAGGACGACCCGGACGCCGCGGCGGAGCCGCCGCCGGAGGACCCGGGCTCCGGTTTCCTCGTGGTGGAGGACGAGGTGGCCGTCGCGCGGGCGACGCGGTGGTGGGGCTTATGGGCGGACAGGCAGGTGTACGGCCTCCCGTTCCCGCAGAGCCGGCAGCTCGAGGTGGAGTACACCGCCAGCATCGGCGCCGGCAGGAACCGTCTCACCTACACGCACCGCGACGACGTCGTGTTCGTGCCCGTCGTCGGCCAGCCGCTGTCGTCCGGCCGCTACTACGCCGCCCGGGCCACGGGGAGGCACGCCGGGAAGGTGTCGGCGTGCTCGAGGGAGGAGGACATGGTGACGTGCTGCGGCCTCTGGTCCTTGGTGAACGACGTGCCGCCGCGGCCGTTCGACCGCGGCGACGTCTACCAGCAGGTGGAGGTGCTGCGGCTGCCGCCGCGCGGGAGGGGTTTCACGGCGGTGGCGGTCGCGCCGGACGGCATCCCGCCGGGCTACCTGAGGAGGGAGGCGTGGAAGGTCCACACCTCGGCGTCCACGAGCTACGACCTCGCCGACGCGGCGCACGGGACGGACTGGCCGCTCCGCCGCCGGATGCCTGACCTCGACAGCTTCGACGTCGGCGTAGGTGGCTCGCCGCCCGTCGTCGTCGGCAGGTGGTACTGCCCGTTCATGTTCATCAACGACGGCGGCGAGCAGCGGCTCAAGGATCAGGTCAAGCGGTGCATGTTCTACGAGATGACGCTGGAGCAGAGGTGGGAGGAGATATACACCCGAGACAACGCCCATCGAGGCAGGAGGAGTACCAGCAGCAAGGACAATGAGGTTGAGGTGAGCGCGACGGTGCGCCGGTCGACGGCGCTGCTGGGCGGCACCGACGCGGTGCGAGGAGGCGGGCCTCAGATGGTCGACGGGGTGATGTGGTTCCGACCGGCGGCGCCGCCGACGAACTCTGGCACGGCAGGTGGAGTTGGGCTGGACATGGTGGTGTGGGAGAAGATGAAGTGGGAGCTGGAGAGAGGAGGGTGGGTTGCCGGTAATGGCGACGTGGAGAGTATCGAGAGGGGGGAGAGGCGTGAGGCGAGGCCGGGTCAGTGGGACAAGTTTGGGTGCTACCTGCTGCTTGAGAGCTTCGTGCTGAGGAGGATGGACGGCAGCGTTGCGCTCACCTGTGGTTTCAGGCACACCGGCAAGATTAGAACCAAATGGGTATGA
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| Protein seq | MYVTRPMSRYQDDPDAAAEPPPEDPGSGFLVVEDEVAVARATRWWGLWADRQVYGLPFPQSRQLEVEYTASIGAGRNRLTYTHRDDVVFVPVVGQPLSSGRYYAARATGRHAGKVSACSREEDMVTCCGLWSLVNDVPPRPFDRGDVYQQVEVLRLPPRGRGFTAVAVAPDGIPPGYLRREAWKVHTSASTSYDLADAAHGTDWPLRRRMPDLDSFDVGVGGSPPVVVGRWYCPFMFINDGGEQRLKDQVKRCMFYEMTLEQRWEEIYTRDNAHRGRRSTSSKDNEVEVSATVRRSTALLGGTDAVRGGGPQMVDGVMWFRPAAPPTNSGTAGGVGLDMVVWEKMKWELERGGWVAGNGDVESIERGERREARPGQWDKFGCYLLLESFVLRRMDGSVALTCGFRHTGKIRTKWV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0413200 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31880 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0413100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015900 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015760 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015690 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016030 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015810 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0315600 | RBH | 0.021271 | 0.508039 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015770 | SBH | 0.0 | 0.128216 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0336400 | SBH | 0.009408 | 0.200968 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015260 | SBH | 0.503236 | 0.032472 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015430 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015310 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016050 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015450 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015570 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015680 | SBH | 0.0 | 3.149456 | 0.0 |
