Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g09240 | OGI:02014330 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:4754173-4756309 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAACCATGGCCATGGTGCAAGACATCACCGGCTACCTGTGCCTCTCCTTGGCTCTCCTCTTGCTCACTCTCGTCCTCCACAAGGTGGCGAGGAAGGCGACCGGTAATGGCGCCGGCAAGCCGAGGCTTCCGCCGGGGCCGTGGCGGCTGCCGGTCATCGGCAACCTCCACCAGGTCGCGATGGGCGGCCCGCTCGTCCACCGCACCATGGCCGACCTGGCGCGCCGGCTGGACGCGCCGCTCATGTCGCTCAGGCTCGGCGAGCTCCGCGTCGTCGTCGCCTCATCCGCCAACGCCGCCAGGGAGATCACCAAGACGCACGACGTCGCGTTCGCGACGCGGCCGTGGACCTCCACCATCCGCGTCCTGATGAGCGACGGCGTTGGGCTGGTGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTCCGCAAGATCGCCGTGGTGGAGCTCCTCAGCGCGCGCCGCGTCCAGTCGTTCCGCCGCATCCGGGAGGACGAGGTCGGCCGCCTCGTCGCCGCCGTCGCCGCCGCCCCGGCGGCGCAGCCCGTGAACGTCAGCGAGCGGATCGCGGCGCTCATCTCCGACTCGGCGGTGCGCACCATCATCGGCGACCGGTTCGAGAGGCGGGACGAGTTCCTGGAGGGTCTCGCCGAGGCGATCAAGATCACCTCCGGGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCGGCGGCACGACGCGGCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATAGAGTGCGCTCTGAGGCAGCACGAGGAGCGGAGGGCCGCCGGCGCCGTGGACGACGACGAGGACCTCGTCGATGTGCTTCTCAGGGTTCAGAAGGATGGGAGCCTCCAGATGCCTCTCACCATGGGCAATATCAAAGCCGTCGTCCTGGTAAGTAGACAAGTACTTGCTGATTAATACTGTACTAATCTCCCTTAATTGCACACGAATACTTCTGAGCTTAGAGTAGTATTTATCTTACCAATAATTAATTTTTCAATCGTATCTACAATCGTACCCTAACGTACGTTCTCTTCCCTAATTTAGTGAAGGTTCAATCACACTTTCTGGATCTATAATCCATTATATTCGTGAAAGGATGAAATATAAGACATATTTTACCAAACCTCTTTTACCTGAGTGCACTTAAAATTTGACTACTGTTAATGTCAAAATCTACAAAGTTTTACCGTTTAAGAATAAAATTAAATAACTTTAACTGATGAATGGAGCGAGTATATATGAAAATAAAAAAAAAGTATGCACACTGAACAAAGGAAGGAAGTAATTGATAACATATTTTTTTACATATATGGGAAATCATGTTTTTTTTCATGCATATAGGAACTTTTTGGTGCTGGGAGCGAGACATCAGCTAATACACTTCAATGGGCGATGACTGAGCTCATAATGAATCCAAGAGTGATGCTGAAGGCACAAGCTGAGTTAAGTAACGTCATCAAAGGAAAGCAAACGATATCTGAAGATGACTTAGTTGAATTGAAGTACTTAAAACTTATTATCAAAGAGACCTTAAGGTTACATCCTGTAGTGCCACTACTTCTCCCTAGGGAATGTCGGGAGACATGTGAGGTCATGGGTTACGATATCCCCATAGGTACTACTGTGCTTGTTAACGTATGGGCAATAGGTAGAGATCCTAAGTATTGGGAGGATGCTGAGACATTCATACCTGAACGATTTGAGGATGGCCATATAGACTTCAAAGGAACAAACTTTGAATTTATACCGTTTGGAGCTGGACGAAGGATGTGCCCTGGCATGGCATTTGCAGAAGTAATCATGGAGCTCGCTCTAGCCTCATTGCTTTACCACTTTGATTGGGAGCTCCCTGATGGCATCTCGCCAACCAAGGTGGACATGATGGAGGAGTTGGGTGCTACAATTCGAAGAAAGAACGATCTTTACCTTATTCCTACTGTCCGTGTGCCTTTGTCAACTGTCTTATAGTTGTTTACACTTATAAATAGTATGTTTGTCTCGTATGTACGTGTCTAAATGATAAGCTATGTAACTTTTGATGATGTGTACTCCTACTTCCTATCCTACCTATTATAAATTATTATTTAAGTTTAATTCTCAAA
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| CDS seq | ATGGCCATGGTGCAAGACATCACCGGCTACCTGTGCCTCTCCTTGGCTCTCCTCTTGCTCACTCTCGTCCTCCACAAGGTGGCGAGGAAGGCGACCGGTAATGGCGCCGGCAAGCCGAGGCTTCCGCCGGGGCCGTGGCGGCTGCCGGTCATCGGCAACCTCCACCAGGTCGCGATGGGCGGCCCGCTCGTCCACCGCACCATGGCCGACCTGGCGCGCCGGCTGGACGCGCCGCTCATGTCGCTCAGGCTCGGCGAGCTCCGCGTCGTCGTCGCCTCATCCGCCAACGCCGCCAGGGAGATCACCAAGACGCACGACGTCGCGTTCGCGACGCGGCCGTGGACCTCCACCATCCGCGTCCTGATGAGCGACGGCGTTGGGCTGGTGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTCCGCAAGATCGCCGTGGTGGAGCTCCTCAGCGCGCGCCGCGTCCAGTCGTTCCGCCGCATCCGGGAGGACGAGGTCGGCCGCCTCGTCGCCGCCGTCGCCGCCGCCCCGGCGGCGCAGCCCGTGAACGTCAGCGAGCGGATCGCGGCGCTCATCTCCGACTCGGCGGTGCGCACCATCATCGGCGACCGGTTCGAGAGGCGGGACGAGTTCCTGGAGGGTCTCGCCGAGGCGATCAAGATCACCTCCGGGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCGGCGGCACGACGCGGCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATAGAGTGCGCTCTGAGGCAGCACGAGGAGCGGAGGGCCGCCGGCGCCGTGGACGACGACGAGGACCTCGTCGATGTGCTTCTCAGGGTTCAGAAGGATGGGAGCCTCCAGATGCCTCTCACCATGGGCAATATCAAAGCCGTCGTCCTGGAACTTTTTGGTGCTGGGAGCGAGACATCAGCTAATACACTTCAATGGGCGATGACTGAGCTCATAATGAATCCAAGAGTGATGCTGAAGGCACAAGCTGAGTTAAGTAACGTCATCAAAGGAAAGCAAACGATATCTGAAGATGACTTAGTTGAATTGAAGTACTTAAAACTTATTATCAAAGAGACCTTAAGGTTACATCCTGTAGTGCCACTACTTCTCCCTAGGGAATGTCGGGAGACATGTGAGGTCATGGGTTACGATATCCCCATAGGTACTACTGTGCTTGTTAACGTATGGGCAATAGGTAGAGATCCTAAGTATTGGGAGGATGCTGAGACATTCATACCTGAACGATTTGAGGATGGCCATATAGACTTCAAAGGAACAAACTTTGAATTTATACCGTTTGGAGCTGGACGAAGGATGTGCCCTGGCATGGCATTTGCAGAAGTAATCATGGAGCTCGCTCTAGCCTCATTGCTTTACCACTTTGATTGGGAGCTCCCTGATGGCATCTCGCCAACCAAGGTGGACATGATGGAGGAGTTGGGTGCTACAATTCGAAGAAAGAACGATCTTTACCTTATTCCTACTGTCCGTGTGCCTTTGTCAACTGTCTTATAG
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| Protein seq | MAMVQDITGYLCLSLALLLLTLVLHKVARKATGNGAGKPRLPPGPWRLPVIGNLHQVAMGGPLVHRTMADLARRLDAPLMSLRLGELRVVVASSANAAREITKTHDVAFATRPWTSTIRVLMSDGVGLVFAPYGALWRQLRKIAVVELLSARRVQSFRRIREDEVGRLVAAVAAAPAAQPVNVSERIAALISDSAVRTIIGDRFERRDEFLEGLAEAIKITSGFSLGDLFPSSRLASFVGGTTRRAEANHRKNFELIECALRQHEERRAAGAVDDDEDLVDVLLRVQKDGSLQMPLTMGNIKAVVLELFGAGSETSANTLQWAMTELIMNPRVMLKAQAELSNVIKGKQTISEDDLVELKYLKLIIKETLRLHPVVPLLLPRECRETCEVMGYDIPIGTTVLVNVWAIGRDPKYWEDAETFIPERFEDGHIDFKGTNFEFIPFGAGRRMCPGMAFAEVIMELALASLLYHFDWELPDGISPTKVDMMEELGATIRRKNDLYLIPTVRVPLSTVL |
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| Function | Cytochrome P450 71D8 [UniProtKB/Swiss-Prot:O81974] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g09240 | LOC_Os02g09240.1 | Chr02 | 4754173 | 4756309 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCATGGTGCAAGACATCACCGGCTACCTGTGCCTCTCCTTGGCTCTCCTCTTGCTCACTCTCGTCCTCCACAAGGTGGCGAGGAAGGCGACCGGTAATGGCGCCGGCAAGCCGAGGCTTCCGCCGGGGCCGTGGCGGCTGCCGGTCATCGGCAACCTCCACCAGGTCGCGATGGGCGGCCCGCTCGTCCACCGCACCATGGCCGACCTGGCGCGCCGGCTGGACGCGCCGCTCATGTCGCTCAGGCTCGGCGAGCTCCGCGTCGTCGTCGCCTCATCCGCCAACGCCGCCAGGGAGATCACCAAGACGCACGACGTCGCGTTCGCGACGCGGCCGTGGACCTCCACCATCCGCGTCCTGATGAGCGACGGCGTTGGGCTGGTGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTCCGCAAGATCGCCGTGGTGGAGCTCCTCAGCGCGCGCCGCGTCCAGTCGTTCCGCCGCATCCGGGAGGACGAGGTCGGCCGCCTCGTCGCCGCCGTCGCCGCCGCCCCGGCGGCGCAGCCCGTGAACGTCAGCGAGCGGATCGCGGCGCTCATCTCCGACTCGGCGGTGCGCACCATCATCGGCGACCGGTTCGAGAGGCGGGACGAGTTCCTGGAGGGTCTCGCCGAGGCGATCAAGATCACCTCCGGGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCGGCGGCACGACGCGGCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATAGAGTGCGCTCTGAGGCAGCACGAGGAGCGGAGGGCCGCCGGCGCCGTGGACGACGACGAGGACCTCGTCGATGTGCTTCTCAGGGTTCAGAAGGATGGGAGCCTCCAGATGCCTCTCACCATGGGCAATATCAAAGCCGTCGTCCTGGAACTTTTTGGTGCTGGGAGCGAGACATCAGCTAATACACTTCAATGGGCGATGACTGAGCTCATAATGAATCCAAGAGTGATGCTGAAGGCACAAGCTGAGTTAAGTAACGTCATCAAAGGAAAGCAAACGATATCTGAAGATGACTTAGTTGAATTGAAGTACTTAAAACTTATTATCAAAGAGACCTTAAGGTTACATCCTGTAGTGCCACTACTTCTCCCTAGGGAATGTCGGGAGACATGTGAGGTCATGGGTTACGATATCCCCATAGGTACTACTGTGCTTGTTAACGTATGGGCAATAGGTAGAGATCCTAAGTATTGGGAGGATGCTGAGACATTCATACCTGAACGATTTGAGGATGGCCATATAGACTTCAAAGGAACAAACTTTGAATTTATACCGTTTGGAGCTGGACGAAGGATGTGCCCTGGCATGGCATTTGCAGAAGTAATCATGGAGCTCGCTCTAGCCTCATTGCTTTACCACTTTGATTGGGAGCTCCCTGATGGCATCTCGCCAACCAAGGTGGACATGATGGAGGAGTTGGGTGCTACAATTCGAAGAAAGAACGATCTTTACCTTATTCCTACTGTCCGTGTGCCTTTGTCAACTGTCTTATAG
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| Protein seq | MAMVQDITGYLCLSLALLLLTLVLHKVARKATGNGAGKPRLPPGPWRLPVIGNLHQVAMGGPLVHRTMADLARRLDAPLMSLRLGELRVVVASSANAAREITKTHDVAFATRPWTSTIRVLMSDGVGLVFAPYGALWRQLRKIAVVELLSARRVQSFRRIREDEVGRLVAAVAAAPAAQPVNVSERIAALISDSAVRTIIGDRFERRDEFLEGLAEAIKITSGFSLGDLFPSSRLASFVGGTTRRAEANHRKNFELIECALRQHEERRAAGAVDDDEDLVDVLLRVQKDGSLQMPLTMGNIKAVVLELFGAGSETSANTLQWAMTELIMNPRVMLKAQAELSNVIKGKQTISEDDLVELKYLKLIIKETLRLHPVVPLLLPRECRETCEVMGYDIPIGTTVLVNVWAIGRDPKYWEDAETFIPERFEDGHIDFKGTNFEFIPFGAGRRMCPGMAFAEVIMELALASLLYHFDWELPDGISPTKVDMMEELGATIRRKNDLYLIPTVRVPLSTVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.474128 | 0.199998 | 1.284716 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0185200 | RBH | 0.705721 | 0.299313 | 5.023563 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43440 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0185200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006490 | RBH | 0.0 | 1.991726 | 1.326611 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006630 | SBH | 0.000000 | 2.286570 | 1.663732 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006430 | SBH | 0.0 | 0.000000 | 0.672735 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006370 | RBH | 0.011247 | 0.020465 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006420 | SBH | 1.352356 | 4.581595 | 5.586592 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0080500 | RBH | 4.278439 | 3.4071775 | 0.2237345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006380 | RBH | 0.414991 | 0.050392 | 0.249546 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0083000 | RBH | 4.397418 | 2.520571 | 0.099118 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006760 | SBH | 0.141070 | 0.080576 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006350 | RBH | 0.327971 | 15.745680 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006660 | SBH | 0.746377 | 3.657747 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006600 | SBH | 1.058422 | 2.692011 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006400 | RBH | 0.115466 | 0.420202 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006530 | SBH | 0.038728 | 0.338339 | 0.781826 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006500 | SBH | 0.000000 | 1.786373 | 6.333513 |
