Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g43440 | OGI:06073650 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:26108626-26109554 | ||||||||
| Gene Symbol | CYP71K9, OsCYP71K9, T5H | ||||||||||
| DNA seq | TTAACCCACGATGGGGACACGCACAACTGGAACTACCAACAGGTCGGCTTTTCGCCGTGCGGTAACCGCCAGAGTTTCAGTCATATCGAGGTCGCCTGCCTGCATCCCATATGGAAGCTCCCAGTCAAAGTGATACAGAAGGCTTGCGAGTAAAAGCTCGATGTTTGCTAGCCTAAACGTCATGCCTGGGCAGATTCTTCGTCCTGCTCCAAAAGGTATGTACTCAAAGCTTGTTTCCTTAAAGTCAATGTTGTTTTGCTCGAACCTCTCTGGCATGAATTTTTCGGGTGCATGCCAGTTGCTTGGGTCCCTACCAATAGACCATGCATTGATGAGTACCATAGCCCCTTTAGACACGTCGAATCCTAATATTTGGCATGGTTCACGACATTCCCTTGGTAGAAGTAGTGGCGTTGGAGGGTGTAGCCGAAGCGTCTCCTTGATGACTAAGTGTAAGTAATGCAGACTACTTATGGTCTCCTCGGTTATTCTTTCTTGTCCATAAAGCACTTGTCGTATCTCGTCTTGTGCCTTCTGCATCACCTTTGGATTGTTCAACAGCTCTGACATTGCCCATTGCAGCGTCGTCGCCGCCGTCTCGCTGCCACCTATAAACAGATCCTACATGAATCGGAAGAAAAACAAATATTCAACTGAATTTTCTAAAGAAAAATGAATCTTGCAAAAAAGTATATAATTTGACAGAAAAATTTGCAGACAAATATTGCAAATATTAAACCATTGGATCACAACCTAAAAACCTAGATTACATCCATGGTCTCATATATATATATTGCCCTTAATGGCCTAGTTGCCGGCGCTGCCATCCTCCCCCCCCAACCCTCTCACTGCTGCCTATTCACATCGCTAACGTCACCTCCAACACCAGCGAGGCTCGCCGACGAACCCTCTATACTACCATCCTCCAT
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| CDS seq | ATGGAGGATGGTAGTATAGAGGGTTCGTCGGCGAGCCTCGCTGGTGTTGGAGGTGGCAGCGAGACGGCGGCGACGACGCTGCAATGGGCAATGTCAGAGCTGTTGAACAATCCAAAGGTGATGCAGAAGGCACAAGACGAGATACGACAAGTGCTTTATGGACAAGAAAGAATAACCGAGGAGACCATAAGTAGTCTGCATTACTTACACTTAGTCATCAAGGAGACGCTTCGGCTACACCCTCCAACGCCACTACTTCTACCAAGGGAATGTCGTGAACCATGCCAAATATTAGGATTCGACGTGTCTAAAGGGGCTATGGTACTCATCAATGCATGGTCTATTGGTAGGGACCCAAGCAACTGGCATGCACCCGAAAAATTCATGCCAGAGAGGTTCGAGCAAAACAACATTGACTTTAAGGAAACAAGCTTTGAGTACATACCTTTTGGAGCAGGACGAAGAATCTGCCCAGGCATGACGTTTAGGCTAGCAAACATCGAGCTTTTACTCGCAAGCCTTCTGTATCACTTTGACTGGGAGCTTCCATATGGGATGCAGGCAGGCGACCTCGATATGACTGAAACTCTGGCGGTTACCGCACGGCGAAAAGCCGACCTGTTGGTAGTTCCAGTTGTGCGTGTCCCCATCGTGGGTTAA
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| Protein seq | MEDGSIEGSSASLAGVGGGSETAATTLQWAMSELLNNPKVMQKAQDEIRQVLYGQERITEETISSLHYLHLVIKETLRLHPPTPLLLPRECREPCQILGFDVSKGAMVLINAWSIGRDPSNWHAPEKFMPERFEQNNIDFKETSFEYIPFGAGRRICPGMTFRLANIELLLASLLYHFDWELPYGMQAGDLDMTETLAVTARRKADLLVVPVVRVPIVG |
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| Function | Costunolide synthase [UniProtKB/Swiss-Prot:X2JE85] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g43440 | LOC_Os06g43440.1 | Chr06 | 26108626 | 26109554 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGATGGTAGTATAGAGGGTTCGTCGGCGAGCCTCGCTGGTGTTGGAGGTGGCAGCGAGACGGCGGCGACGACGCTGCAATGGGCAATGTCAGAGCTGTTGAACAATCCAAAGGTGATGCAGAAGGCACAAGACGAGATACGACAAGTGCTTTATGGACAAGAAAGAATAACCGAGGAGACCATAAGTAGTCTGCATTACTTACACTTAGTCATCAAGGAGACGCTTCGGCTACACCCTCCAACGCCACTACTTCTACCAAGGGAATGTCGTGAACCATGCCAAATATTAGGATTCGACGTGTCTAAAGGGGCTATGGTACTCATCAATGCATGGTCTATTGGTAGGGACCCAAGCAACTGGCATGCACCCGAAAAATTCATGCCAGAGAGGTTCGAGCAAAACAACATTGACTTTAAGGAAACAAGCTTTGAGTACATACCTTTTGGAGCAGGACGAAGAATCTGCCCAGGCATGACGTTTAGGCTAGCAAACATCGAGCTTTTACTCGCAAGCCTTCTGTATCACTTTGACTGGGAGCTTCCATATGGGATGCAGGCAGGCGACCTCGATATGACTGAAACTCTGGCGGTTACCGCACGGCGAAAAGCCGACCTGTTGGTAGTTCCAGTTGTGCGTGTCCCCATCGTGGGTTAA
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| Protein seq | MEDGSIEGSSASLAGVGGGSETAATTLQWAMSELLNNPKVMQKAQDEIRQVLYGQERITEETISSLHYLHLVIKETLRLHPPTPLLLPRECREPCQILGFDVSKGAMVLINAWSIGRDPSNWHAPEKFMPERFEQNNIDFKETSFEYIPFGAGRRICPGMTFRLANIELLLASLLYHFDWELPYGMQAGDLDMTETLAVTARRKADLLVVPVVRVPIVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0641800 | SBH | 2.521651 | 1.638947 | 5.546000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09200 | RBH | 0.0 | 0.0 | 0.500655 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0641800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023920 | RBH | 0.0 | 0.929091 | 0.363357 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023700 | SBH | 0.0 | 5.024803 | 0.028782 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023900 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023440 | SBH | 0.0 | 0.081100 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023920 | SBH | 1.217959 | 2.052969 | 1.587025 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0409600 | SBH | 1.6586285 | 0 | 0.070016 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023400 | RBH | 0.172572 | 0.0 | 0.292555 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0391000 | SBH | 2.740199 | 1.682734 | 0.5640175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023860 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023770 | SBH | 0.0 | 11.928889 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023450 | SBH | 0.0 | 6.840860 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0024120 | SBH | 0.0 | 0.141510 | 0.813795 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023690 | SBH | 0.0 | 12.636143 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023530 | SBH | 0.344035 | 0.000000 | 0.634839 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023730 | SBH | 0.818922 | 0.000000 | 0.450842 |
