Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g07860 | OGI:02000870 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:4117568-4118965 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTCAATCAAAGCATCGACACAAACTAGTTGTGCGATAGCATTACAGCTATTGTCTGGCCAGAAGTGAGTAAGTTCCTCCACTCGGCCTTTATTAGCTAAAACATGACTAATACGGTTTTGATTCCTATGCACCTTAGCAAGACTAACAACCCTGTTTCCCATCATGAGGTCGTGCACCTCCTTGACTAAAAACATCAACTCCGATCGGACCAACTCCTTGGACTGGAGCAAATTCAGCATCTCCTGGCAATCAGTTTCTATGATGATCGGTAGCAGTGTCCATTGGAGAGCCATAAGTAATCCCTCCCGACACGCCATCAGTTCCGCTTCTAGAGCACCTGTGCACCGTTGGATGTAACCACAAGCTGCAAAGATGACTTCTCCTAGTCTATTTCGGAGCACCACACCCAGGCCGCCTTTCCCTGTATCAGGTTGAAAAGAACCATCAATGTTCAACTTCATCAGTCCCTGATCTGGCGGCTTCCATCCGTGCAGAACATCATCTTGGGGATTGACTGTCCTATGCACTTTCTTCACCTTCGCACAAACCACATGTTTGCCTTTAACCAGATTCGCTTCAGGTTTCTTCAGACATTTTAGTATTTGACCCTAACATGTTTTATATTTATGGAAATATAAACTATAAGATTTATATATATCATATTTAGCAATACTTTTAATGAACATATTGTATGCTAATTACAAATGTATTTACGGAACAGAAACTAACATTTGGACATCACAACAGATTATATTCTGAATACTTACAACTATGTGTCTATGACAACTTCAGAGTTGTATATCAAATTCAATTCAATTTATTTTAAAAAATTGCTTCACACAATATTATACAGGAAAAAACCGCTACTACTTACTAACCTGACATGTAAAAACTCATCTAATAGTATCACTGTTATTGTAAATCAAGATTACAAGCTCTTATGAGCATCTCCAGCAGGGACCTTAAACCCAGTCCCTAAACAAATTTTGAGGGTTAACATAAAAAAACTAGATCCAGCAGAGACCCTAAACCCAGCCCCCAAAATGAGGAGGCCCTCAGATCCACCCCCAAGCCCCTAGTCCTGGGGCTCCGAGCACAGCCCCCATTGACATTTTTCTGGTCCCAAACGACAATTCACTTTCGTGCTCTCATCACATTCCTGCGCGGCACCGCGACGCTGGATCTCATCTGGGCTCCAGCGCCGGCGGCCATCGATTCCCCTGCACCTCCGGCAAGATTGGCACAAAAAGGTGAGAATTTCCCCTACCTCTGTCGCCCATCATCCGCAAGGGTCTCCGGCCGCCGCCCTCACGAGTCCGCCGTCCACATGGTGTCGCACGACCTCCCGCCGTCGGTCTGCACGTTGCTATCCACACACCACCCCGCACAGCCAT
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| CDS seq | ATGGCTGTGCGGGGTGGTGTGTGGATAGCAACGTGCAGACCGACGGCGGGAGGTCGTGCGACACCATGTGGACGGCGGACTCGTGAGGGCGGCGGCCGGAGACCCTTGCGGATGATGGGCGACAGAGTGATACTATTAGATGAGTTTTTACATGTCAGGTTAGGTCAAATACTAAAATGTCTGAAGAAACCTGAAGCGAATCTGGTTAAAGGCAAACATGTGGTTTGTGCGAAGGTGAAGAAAGTGCATAGGACAGTCAATCCCCAAGATGATGTTCTGCACGGATGGAAGCCGCCAGATCAGGGACTGATGAAGTTGAACATTGATGGTTCTTTTCAACCTGATACAGGGAAAGGCGGCCTGGGTGTGGTGCTCCGAAATAGACTAGGAGAAGTCATCTTTGCAGCTTGTGGTTACATCCAACGGTGCACAGGTGCTCTAGAAGCGGAACTGATGGCGTGTCGGGAGGGATTACTTATGGCTCTCCAATGGACACTGCTACCGATCATCATAGAAACTGATTGCCAGGAGATGCTGAATTTGCTCCAGTCCAAGGAGTTGGTCCGATCGGAGTTGATGTTTTTAGTCAAGGAGGTGCACGACCTCATGATGGGAAACAGGGTTGTTAGTCTTGCTAAGGTGCATAGGAATCAAAACCGTATTAGTCATGTTTTAGCTAATAAAGGCCGAGTGGAGGAACTTACTCACTTCTGGCCAGACAATAGCTGTAATGCTATCGCACAACTAGTTTGTGTCGATGCTTTGATTGAATAA
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| Protein seq | MAVRGGVWIATCRPTAGGRATPCGRRTREGGGRRPLRMMGDRVILLDEFLHVRLGQILKCLKKPEANLVKGKHVVCAKVKKVHRTVNPQDDVLHGWKPPDQGLMKLNIDGSFQPDTGKGGLGVVLRNRLGEVIFAACGYIQRCTGALEAELMACREGLLMALQWTLLPIIIETDCQEMLNLLQSKELVRSELMFLVKEVHDLMMGNRVVSLAKVHRNQNRISHVLANKGRVEELTHFWPDNSCNAIAQLVCVDALIE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g07860 | LOC_Os02g07860.1 | Chr02 | 4117568 | 4118965 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGTGCGGGGTGGTGTGTGGATAGCAACGTGCAGACCGACGGCGGGAGGTCGTGCGACACCATGTGGACGGCGGACTCGTGAGGGCGGCGGCCGGAGACCCTTGCGGATGATGGGCGACAGAGTGATACTATTAGATGAGTTTTTACATGTCAGGTTAGGTCAAATACTAAAATGTCTGAAGAAACCTGAAGCGAATCTGGTTAAAGGCAAACATGTGGTTTGTGCGAAGGTGAAGAAAGTGCATAGGACAGTCAATCCCCAAGATGATGTTCTGCACGGATGGAAGCCGCCAGATCAGGGACTGATGAAGTTGAACATTGATGGTTCTTTTCAACCTGATACAGGGAAAGGCGGCCTGGGTGTGGTGCTCCGAAATAGACTAGGAGAAGTCATCTTTGCAGCTTGTGGTTACATCCAACGGTGCACAGGTGCTCTAGAAGCGGAACTGATGGCGTGTCGGGAGGGATTACTTATGGCTCTCCAATGGACACTGCTACCGATCATCATAGAAACTGATTGCCAGGAGATGCTGAATTTGCTCCAGTCCAAGGAGTTGGTCCGATCGGAGTTGATGTTTTTAGTCAAGGAGGTGCACGACCTCATGATGGGAAACAGGGTTGTTAGTCTTGCTAAGGTGCATAGGAATCAAAACCGTATTAGTCATGTTTTAGCTAATAAAGGCCGAGTGGAGGAACTTACTCACTTCTGGCCAGACAATAGCTGTAATGCTATCGCACAACTAGTTTGTGTCGATGCTTTGATTGAATAA
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| Protein seq | MAVRGGVWIATCRPTAGGRATPCGRRTREGGGRRPLRMMGDRVILLDEFLHVRLGQILKCLKKPEANLVKGKHVVCAKVKKVHRTVNPQDDVLHGWKPPDQGLMKLNIDGSFQPDTGKGGLGVVLRNRLGEVIFAACGYIQRCTGALEAELMACREGLLMALQWTLLPIIIETDCQEMLNLLQSKELVRSELMFLVKEVHDLMMGNRVVSLAKVHRNQNRISHVLANKGRVEELTHFWPDNSCNAIAQLVCVDALIE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46960 | RBH | 0.0 | 0.0 | 0.348936 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | SBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004360 | SBH | 0.038443 | 0.407024 | 0.900679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004250 | SBH | 0.061636 | 0.022630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004280 | SBH | 1.714308 | 1.291915 | 1.010436 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0070500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0005700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004400 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004530 | SBH | 1.965272 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004470 | SBH | 0.206843 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
