Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g48600 | OGI:01084620 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:27866834-27867123 | ||||||||
| Gene Symbol | UBP4-1, OsUBP4-1 | ||||||||||
| DNA seq | TCATTCTCGTGTGTAGAACAGCACATAAGCAGCAGGTGTCTTTATACTGTCTTCAGTTATAGGTCTCACGCACTCATCATCAAACTTGTACCATCCCTTCCCTTCTTCATGCTGCAGAAACCAACCAGCCTTGCTCGTTATCAAGACATTGAAAAAGATAGTCTCAAGCTTATTTCTTGTGAATTGGGTGTACGAGAACCTTTTGAGATGAATGACCAGAACTTCCGGTAGCCTCCACAGATCTAATTTCTTCATCGCTTGTTGATGCTTTTTGCAGCATGGGCAGTACC |
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| CDS seq | ATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGGTTCTCGTACACCCAATTCACAAGAAATAAGCTTGAGACTATCTTTTTCAATGTCTTGATAACGAGCAAGGCTGGTTGGTTTCTGCAGCATGAAGAAGGGAAGGGATGGTACAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAAAGACACCTGCTGCTTATGTGCTGTTCTACACACGAGAATGA |
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| Protein seq | MKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLITSKAGWFLQHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE |
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| Function | Ubiquitin carboxyl-terminal hydrolase 8 [UniProtKB/Swiss-Prot:Q9C585] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g48600 | LOC_Os01g48600.1 | Chr01 | 27866834 | 27867123 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGGTTCTCGTACACCCAATTCACAAGAAATAAGCTTGAGACTATCTTTTTCAATGTCTTGATAACGAGCAAGGCTGGTTGGTTTCTGCAGCATGAAGAAGGGAAGGGATGGTACAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAAAGACACCTGCTGCTTATGTGCTGTTCTACACACGAGAATGA
More
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| Protein seq | MKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLITSKAGWFLQHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0160000 | SBH | 0.234153 | 0.079779 | 1.613933 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g17480 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0160000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0003700 | SBH | 0.124686 | 6.088477 | 4.411530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0003670 | SBH | 0.124921 | 3.300101 | 1.071368 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003580 | SBH | 0.279182 | 3.043009 | 5.065449 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0003520 | SBH | 0.035653 | 0.224954 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022680 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0463600 | RBH | 0.01907 | 0.107907 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027650 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0452600 | RBH | 0.0419825 | 0 | 0.054125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023210 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006420 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0003650 | SBH | 3.038674 | 9.675517 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G003710 | SBH | 0.107820 | 6.606236 | 1.493549 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028140 | RBH | 0.0 | 0.0 | 0.0 |
