Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g17480 | OGI:12055810 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:10692696-10695419 | ||||||||
| Gene Symbol | UBP4-3, OsUBP4-3 | ||||||||||
| DNA seq | ATGGCTAAAATTACGCCAAATGTGACAGTTGCAACCAGCACTGATCCAATCCCCAGGTTTGTGTTGAATTTGTCATTTTCTCTGATTCCTTCTCTTCACCTGCTTGTTTTTGTTGAGGAATATATCGGTCGTGAAAGTGACCTACCTGACCACCCCTGCTTGCATTGCAAAGTTTTAGTGCACGCAATATCAATTTTTCAGGGTTCTGCAAAAGCAAACATACGGATCGATAAGTCAGTGCTGTTAATTTTTCTTGACTTCTACCGAAAACAAGCCTTAATAAGAAAGGAGCCAGAAGTGTATTCCCATCCATAGAAAAACCCTGCAGGAATCTTACTCTGTGAAATATCTAATGGACTCTGCCCCTTATTATTTAGTAATGTAACACTCCGGTGCATTCTACTTGCAGTAGAATAGTAGAATTAATTTCGACCCTTTATTTTAAAGGATAGATTAATAATCTCTTAATACAGCTCAGAGGTAATTTTGGCATGGGATAATTTCTTTTTCTCATCTTTTCGCCTTAGGTCCGACAAAAGGCATATTGCCCGCGACCCCGACGCAGGCACCGCTTCAGTCATAGCAGGCGGCAGCGCGGCGAAAATCGCCGTCGGCTCTGGATCCGGATCACCGGCGGACCTCTGCCGCCGCTCCGCCCGCCCATCTACTCCACCGGCGGCTTGCCAACCCGAACCCCCCGCCCCCACCCCCAAAGCCCCCAACACAAGCACCGCATTAGTCATTGCAGGCGGCGGCGCGGCGAAAATTGCCGTCGGCGCAGGCGGCGGCGCTGCCAGCATCAGGTCCGATGCAAAAGCTCCCGACTCGCAGGCACCGCATCATCGCATCTGGTTGTTGTATTCTCTGATTTAGCCTTAACCTTGTGCTATGGTGCTGTGTGTATGCATGGTTAAATTCTTCTCAATAAGCCTGAAGTATGTAATGTTCCTTTGGATATTATGGCTTCACTGCTTATTGAATAGCCTTCTTTGCAATCTTCATTTCTTTTGTTAACCAAATTAGGTTGATGTGCGTATGTATGATGTGGAAATATTACCTCAATAAGTGGCTTGCTTTGGATTCTGAATTGGAAGTTACTGTTGTACTGTTGTTGCATAACTAATAACCACTTTTTTCTCTGCTTTGCATTCAGGTACTGCCCATGCTGCAAAAAGCATCAACAAGCGATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGGTTCTCGTACACCCAATTCACAAGAAATAAGCTTGAGACTATCTTTTTCAATGTCTTGATAACGAGCAAGGCTGGTTGGTTTCTGCAGCATGAAGGGAAGGGATGGTACAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAACGACACCTGCTGCTTATGTGTTGTTCTACACACGAGAATGATCAAGATACAGCTGCAATACATCAAATATTTTTTCGGGATGTTTTGCCAAGTCTAGATCTTCCTACATATTCAACATATGGGGCACTTGAATCTCTCAAGTCAATAACCTATACAACAGCATGTACAGATTCAATTGCCGACAAGACAACAAAAGACCTAGCTAATGAACTATTCTTTTCCAGATTCTTTTTGTACATGGCTTGGGGGTCCTACAAAGTAATAGCCTGCTAGTGATTAGCCTTGGTTCTACAAAATTCTTTTTGTCAACGAATTGTTGCGAATAATTTTAAAACGATGTAACCTCTCCTTTTAAATTAACTCGTGTGATCGATCTGTTCCTGTCGCGAGTGTGACACCATAGCTACTCCTGTGTTGCTCCATCCATGAATGGCTATTTGCCAATTCCTGAGTCAGATGACACTGACATGATGATCATTGAAGGTCTGAAATCCCCATTCTGTAGCTTTGCTTTATGGACCAGGAAAATATATCCATGATGATTTCTGATTCCGTCCTATCTCCAGAACTCTGCTGTTTGACAAATGACAGAAGATTATTGCTGCCCTCAGTTCTGTTTGGCCTGATTGCCTTGGACAAATATTCTGACATATCTCAAGAACATCTTTTCTGCCTACACATATCACAGGACCAGATCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATTGCAATTGTTATAAATAAGAACAATAAAAAAAAAGTAAGTCTAACTACTCATTAAAAATATCCCATACCAGAGTTTGATTAAAATCATCTAAATGTCTAACTACTCATCTGTCATCTTATATCATTGACAAGAGTGAACTATCGGACTGCCACTATCGCTTCCTTCTAAACCCATCAATTCGTTCCTGTGTAAAACCTTTTTCCAGCCGATCCCCATTCCAGTGCTCCATACACTTGAGCATAAATAAGCCAGAAGACGGACAGCGATGGAGGGAGCGGAGAAGGCGGCGAGGGCAGGGGAAACGACAGCGACGGAGGGGCGCGGAGAAGGTGACGCGGCCAGGGGAGACGGACGGCGACGGAGGAGGCGAGGGCGGGGGAGGCGGACAGCGACGGAGGGGGTGGAGAAGGCGACGCGGGCGGGGAAGACGGATGGCGACGGAGGAGGTGGAGAAGGTGGCGAGGCCGGGGGAGGCGACGACGCTGGAGAGGAAGGAGATGCCGATGGCGCTGGAGGGGAAGGAGATGCCGATGGCGCTGGATGTTATCTCAATCGGGCCGAAAACAAAGCCCCTTCACAAATGA
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| CDS seq | ATGGCTAAAATTACGCCAAATGTGACAGTTGCAACCAGCACTGATCCAATCCCCAGGTCCGACAAAAGGCATATTGCCCGCGACCCCGACGCAGGCACCGCTTCAGTCATAGCAGGCGGCAGCGCGGCGAAAATCGCCGTCGGCTCTGGATCCGGATCACCGGCGGACCTCTGCCGCCGCTCCGCCCGCCCATCTACTCCACCGGCGGCTTGCCAACCCGAACCCCCCGCCCCCACCCCCAAAGCCCCCAACACAAGCACCGCATTAGTCATTGCAGGCGGCGGCGCGGCGAAAATTGCCGTCGGCGCAGGCGGCGGCGCTGCCAGCATCAGGTACTGCCCATGCTGCAAAAAGCATCAACAAGCGATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGGTTCTCGTACACCCAATTCACAAGAAATAAGCTTGAGACTATCTTTTTCAATGTCTTGATAACGAGCAAGGCTGGTTGGTTTCTGCAGCATGAAGGGAAGGGATGGTACAAGTTTGATGATGAGTGCCTTTGCTTTATGGACCAGGAAAATATATCCATGATGATTTCTGATTCCGTCCTATCTCCAGAACTCTGCTGTTTGACAAATGACAGAAGATTATTGCTGCCCTCAGTTCTGTTTGGCCTGATTGCCTTGGACAAATATTCTGACATATCTCAAGAACATCTTTTCTGCCTACACATATCACAGGACCAGATCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATTGCAATTGTTATAAATAAGAACAATAAAAAAAAAAGTGAACTATCGGACTGCCACTATCGCTTCCTTCTAAACCCATCAATTCGTTCCTGTGTAAAACCTTTTTCCAGCCGATCCCCATTCCAGTGCTCCATACACTTGAGCATAAATAAGCCAGAAGACGGACAGCGATGGAGGGAGCGGAGAAGGCGGCGAGGGCAGGGGAAACGACAGCGACGGAGGGGCGCGGAGAAGGTGACGCGGCCAGGGGAGACGGACGGCGACGGAGGAGGCGAGGGCGGGGGAGGCGGACAGCGACGGAGGGGGTGGAGAAGGCGACGCGGGCGGGGAAGACGGATGGCGACGGAGGAGGTGGAGAAGGTGGCGAGGCCGGGGGAGGCGACGACGCTGGAGAGGAAGGAGATGCCGATGGCGCTGGAGGGGAAGGAGATGCCGATGGCGCTGGATGTTATCTCAATCGGGCCGAAAACAAAGCCCCTTCACAAATGA
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| Protein seq | MAKITPNVTVATSTDPIPRSDKRHIARDPDAGTASVIAGGSAAKIAVGSGSGSPADLCRRSARPSTPPAACQPEPPAPTPKAPNTSTALVIAGGGAAKIAVGAGGGAASIRYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLITSKAGWFLQHEGKGWYKFDDECLCFMDQENISMMISDSVLSPELCCLTNDRRLLLPSVLFGLIALDKYSDISQEHLFCLHISQDQIRLDGHQSFMCNSMLIAIVINKNNKKKSELSDCHYRFLLNPSIRSCVKPFSSRSPFQCSIHLSINKPEDGQRWRERRRRRGQGKRQRRRGAEKVTRPGETDGDGGGEGGGGGQRRRGWRRRRGRGRRMATEEVEKVARPGEATTLERKEMPMALEGKEMPMALDVISIGPKTKPLHK |
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| Function | Ubiquitin carboxyl-terminal hydrolase 8 [UniProtKB/Swiss-Prot:Q9C585] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g17480 | LOC_Os09g17480.1 | Chr09 | 10692696 | 10695419 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTAAAATTACGCCAAATGTGACAGTTGCAACCAGCACTGATCCAATCCCCAGGTCCGACAAAAGGCATATTGCCCGCGACCCCGACGCAGGCACCGCTTCAGTCATAGCAGGCGGCAGCGCGGCGAAAATCGCCGTCGGCTCTGGATCCGGATCACCGGCGGACCTCTGCCGCCGCTCCGCCCGCCCATCTACTCCACCGGCGGCTTGCCAACCCGAACCCCCCGCCCCCACCCCCAAAGCCCCCAACACAAGCACCGCATTAGTCATTGCAGGCGGCGGCGCGGCGAAAATTGCCGTCGGCGCAGGCGGCGGCGCTGCCAGCATCAGGTACTGCCCATGCTGCAAAAAGCATCAACAAGCGATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGGTTCTCGTACACCCAATTCACAAGAAATAAGCTTGAGACTATCTTTTTCAATGTCTTGATAACGAGCAAGGCTGGTTGGTTTCTGCAGCATGAAGGGAAGGGATGGTACAAGTTTGATGATGAGTGCCTTTGCTTTATGGACCAGGAAAATATATCCATGATGATTTCTGATTCCGTCCTATCTCCAGAACTCTGCTGTTTGACAAATGACAGAAGATTATTGCTGCCCTCAGTTCTGTTTGGCCTGATTGCCTTGGACAAATATTCTGACATATCTCAAGAACATCTTTTCTGCCTACACATATCACAGGACCAGATCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATTGCAATTGTTATAAATAAGAACAATAAAAAAAAAAGTGAACTATCGGACTGCCACTATCGCTTCCTTCTAAACCCATCAATTCGTTCCTGTGTAAAACCTTTTTCCAGCCGATCCCCATTCCAGTGCTCCATACACTTGAGCATAAATAAGCCAGAAGACGGACAGCGATGGAGGGAGCGGAGAAGGCGGCGAGGGCAGGGGAAACGACAGCGACGGAGGGGCGCGGAGAAGGTGACGCGGCCAGGGGAGACGGACGGCGACGGAGGAGGCGAGGGCGGGGGAGGCGGACAGCGACGGAGGGGGTGGAGAAGGCGACGCGGGCGGGGAAGACGGATGGCGACGGAGGAGGTGGAGAAGGTGGCGAGGCCGGGGGAGGCGACGACGCTGGAGAGGAAGGAGATGCCGATGGCGCTGGAGGGGAAGGAGATGCCGATGGCGCTGGATGTTATCTCAATCGGGCCGAAAACAAAGCCCCTTCACAAATGA
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| Protein seq | MAKITPNVTVATSTDPIPRSDKRHIARDPDAGTASVIAGGSAAKIAVGSGSGSPADLCRRSARPSTPPAACQPEPPAPTPKAPNTSTALVIAGGGAAKIAVGAGGGAASIRYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLITSKAGWFLQHEGKGWYKFDDECLCFMDQENISMMISDSVLSPELCCLTNDRRLLLPSVLFGLIALDKYSDISQEHLFCLHISQDQIRLDGHQSFMCNSMLIAIVINKNNKKKSELSDCHYRFLLNPSIRSCVKPFSSRSPFQCSIHLSINKPEDGQRWRERRRRRGQGKRQRRRGAEKVTRPGETDGDGGGEGGGGGQRRRGWRRRRGRGRRMATEEVEKVARPGEATTLERKEMPMALEGKEMPMALDVISIGPKTKPLHK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028560 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022680 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028250 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028000 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028140 | SBH | 0.0 | 0.0 | 0.0 |
