Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0027650 | OGI:01084620 | 7/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:29108281-29110359 | ||||||||
| Gene Symbol | UBP4-1, OsUBP4-1, UBP4-3, OsUBP4-3 | ||||||||||
| DNA seq | TTAGACTTTTTTTTTGTTGTTCTTATTTATGACAATTGCAATCAACATACTGTTGCACATAAAGCTCTGATGCCCATCCAACCTGGTCTGGTTCTGTGATATGTCAAGGCAGAAAAGATGTTCTTGAGATATGTCAGAATATTTGTCCAAGGCAATCAGGCTAAACAGAACTGAGGGCAGCAATAATCTTCTGTTATTTGTCAAACAGCAGAGTTCTGGAGATAGGACGGAATCAGAAATCATCATGGATATATTTCCCTGGTCCATAAAGCAAAGCTACAGAATGGGGATTTCAGACCTTCAATGATCATCATGTCAGTGTCATCTGACTCTCAGGAATTGGCAAATAGCCATTCATGGATGGAGCAACACAGGAGTAGCTATGGCGTCGCACTCGCGACAGGAACAGATCGATCATACGAGTTAATTTAAAAGGAGAGGTTACATCGTTTTAAAATTATTCGCAACAATTCGTTGACAAAAAGAATTTTGTAGAACCAAGGCTAATCACTAGCAGGCTATTACATTGTAGGACCCCCAAGCCATGTACAAAAAGAATCTGGAAAAGAATAGTTCATTAGCTAGGTCTTTTGTTGTCCTGTCGGCAATTGAATCTATACATGCTGTTGTATAGGTTAGTGACTTGAGAGATTCAAGTGCCCCATTTGTTGAATATGTAGGAAGATCTAGACTTGGCAAAACATCCCGAAAAAATATTTGATGTATTGCAGCTGTATCTTGATCATTCTCGTGTGTAGAACAGCACATAAGCAGCAGGTGTCTTTATACTGTCTTCAGTTATAGGTCTCACGCACTCATCATCAAACTTGTACCATCCCTTCCCTTCTTCATGCTGCAGAAACCAACCAGCCTTGCTCGTTATCAAGACATTGAAAAAGATAGTCTCAAGCTTATTTCTTGTGAATTGGGTGTACGAGAACCTTTTGAGATGAATGACCAGAACTTCCGGTAGCCTCCACAGATCTAATTTCTTCATCGCTTGTTGATGCTTTTTGCAGCATGGGCAGTACCTGAATGCAAAGCAGAGAAAAAAGTGGTTATCAGTTATGCAACAACAATACAACAGTAACTTCCAATTCAGAATCCAAAGCAAGCCACGTATTGAGGTAATATTTCCACATCATACATATGCACATCAACCTATTTTGGTTAACAAAAGAAATGAAGATTGCAAAGAAGGCTATTCAATAAGCAGTGAAGCTAAGAGCATAACAGCTGTTCCTAAGGGGCACTCACCACATGTCTTCTGGGCCCAACTGTTCCTCTTTTTTTAGAAAGGCTTCCAGACAACCATGTAGTGCGACAGAATCTTCATTTCCTTAAGCTTATGAATCTCAGGGAGACTTTTCAGCATTGAGGTGTCATATTGTCCTACTGCATTTTGTTGCCAATGGACATTGATAAGTAGCCGATAATGAAAATGGTTTGCACCAAATATGCTGATTCATAAAGTGGTCAGGATTTAAAGTACATGTGTTTATAATTAAGTAACAACTGAAAAACTAGCAAAAAATTTTCTTATAGCACTAGTATTTGCATCTGAAATAGTACTAGTTTACTAGCATGTGCGCTCTCAGTTAAAGCAATAGCTGCATATTATGATAGACCTCACCTACGGTACAAGCACCAAATATAAGCATATGCCGTTTATACATCAACCATAATATCCAAAAGGAACACTACATACTTCAGGCTTATCGAGAAGAATTTAACCATGCATACACACAGCACAATAGCACAAGGTTAAGGCTAAATCAGAGAATTACAAGAACAATCAGATGCGGTGCCTGCGAGTCGGGAGCTTTTGCGTCGGACCTGATGCTGATTTTCGCCGCACCGCCACCTGCGATGACTGATGCGGTGCCTGCGTCGGGGGCTTTTGGGGGGGGGGGGGGGGGGGGTTTGGGTCAGCAAGCCGCCGGTGGAGTAGACGGGCGGGCGGAGCGGCGGCGGAGGTGGGGGCCAGAGGAGGAGGTCCGCCGGCGATCCGGATCCGGAGCCGACGGCGATTTTCGCCGCGCCGTTGCCTGCGATGACTGAAGCGGTGCCTGCGTCGGG
More
|
||||||||||
| CDS seq | ATGCTGCAAAAAGCATCAACAAGCGATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGCATGAAGAAGGGAAGGGATGGTACAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAAAGACACCTGCTGCTTATCTTTGCTTTATGGACCAGGGAAATATATCCATGATGATTTCTGATTCCGTCCTATCTCCAGAACTCTGCTGTTTGACAAATAACAGAAGATTATTGCTGCCCTCAGTTCTGTTTAGCCTGATTGCCTTGGACAAATATTCTGACATATCTCAAGAACATCTTTTCTGCCTTGACATATCACAGAACCAGACCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATTGCAATTGTCATAAATAAGAACAACAAAAAAAAAGTCTAA
More
|
||||||||||
| Protein seq | MLQKASTSDEEIRSVEATGSSGHSSQKHEEGKGWYKFDDECVRPITEDSIKTPAAYLCFMDQGNISMMISDSVLSPELCCLTNNRRLLLPSVLFSLIALDKYSDISQEHLFCLDISQNQTRLDGHQSFMCNSMLIAIVINKNNKKKV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0027650 | OsIR64_01g0027650.01 | Chr01 | 29108281 | 29110359 | - | NAM | ||
| CDS seq | ATGCTGCAAAAAGCATCAACAAGCGATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGCATGAAGAAGGGAAGGGATGGTACAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAAAGACACCTGCTGCTTATCTTTGCTTTATGGACCAGGGAAATATATCCATGATGATTTCTGATTCCGTCCTATCTCCAGAACTCTGCTGTTTGACAAATAACAGAAGATTATTGCTGCCCTCAGTTCTGTTTAGCCTGATTGCCTTGGACAAATATTCTGACATATCTCAAGAACATCTTTTCTGCCTTGACATATCACAGAACCAGACCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATTGCAATTGTCATAAATAAGAACAACAAAAAAAAAGTCTAA
More
|
|||||||
| Protein seq | MLQKASTSDEEIRSVEATGSSGHSSQKHEEGKGWYKFDDECVRPITEDSIKTPAAYLCFMDQGNISMMISDSVLSPELCCLTNNRRLLLPSVLFSLIALDKYSDISQEHLFCLDISQNQTRLDGHQSFMCNSMLIAIVINKNNKKKV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028560 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018470 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0463600 | RBH | 0.01907 | 0.107907 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019330 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0452600 | RBH | 0.0419825 | 0 | 0.054125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019270 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028140 | RBH | 0.0 | 0.0 | 0.0 |
