Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0088600 | OGI:12016140 | 2/50 | Minghui 63 | MH63RS3 | HZAU | Chr12:5551164-5553128 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | NamRoo_MH63RS3_INS1216830,02428_MH63RS3_INS1215450,02428_MH63RS3_DEL1228690,Basmati1_MH63RS3_INV1208220,Basmati1_MH63RS3_INS1208950,Basmati1_MH63RS3_DEL1210940,Y58S_MH63RS3_INV1204220,Lemont_MH63RS3_INS1200570,128077_MH63RS3_INS1200470,128077_MH63RS3_INS1214380,127652_MH63RS3_INV1207000,127652_MH63RS3_DEL1227570_1,S548_MH63RS3_INV1202620,S548_MH63RS3_DEL1206090,R9311_MH63RS3_INV1203450,R9311_MH63RS3_DEL1206400,R9311_MH63RS3_DEL1206490,CN1_MH63RS3_INV1202580,ZH11_MH63RS3_INS1200470,ZH11_MH63RS3_INS1215450,DG_MH63RS3_DEL1229470,DG_MH63RS3_INV1202750,DG_MH63RS3_DEL1204200,DHX2_MH63RS3_INS1200510,127518_MH63RS3_INV1204270,KY131_MH63RS3_INS1214930,KY131_MH63RS3_INS1215230,XL628S_MH63RS3_DEL1203170,IR64_MH63RS3_INV1203620,IR64_MH63RS3_DEL1206720,HZ_MH63RS3_INV1203070,125619_MH63RS3_INV1207020,Tumba_MH63RS3_DEL1232550,Tumba_MH63RS3_INV1203200,Tumba_MH63RS3_DEL1206050,Kosh_MH63RS3_INS1215160,132424_MH63RS3_INV1203390,WSSM_MH63RS3_DEL1222780,WSSM_MH63RS3_DEL1202630,WSSM_MH63RS3_INV1202690,LK638S_MH63RS3_DEL1203130,R527_MH63RS3_INV1202920,R527_MH63RS3_DEL1205770,G8_MH63RS3_INV1203630,G8_MH63RS3_DEL1206470,TM_MH63RS3_INV1205350,127564_MH63RS3_INV1204280,117534_MH63RS3_DEL1211180,117534_MH63RS3_INS1211350_1,J4155S_MH63RS3_INV1203740,ZS97RS3_MH63RS3_DEL1228340,ZS97RS3_MH63RS3_DEL1203310,132278_MH63RS3_INS1218530,II32_MH63RS3_DEL1229740,II32_MH63RS3_INV1203140,II32_MH63RS3_DEL1206100,G46_MH63RS3_INV1202380,G46_MH63RS3_TRA1204230,FS32_MH63RS3_INV1203110,J4155_MH63RS3_INV1204300,117425_MH63RS3_INV1208300,117425_MH63RS3_TRA1211060,YX1_MH63RS3_INV1205030,YX1_MH63RS3_DEL1207640,Azucena_MH63RS3_INS1217690,G630_MH63RS3_INV1203200,D62_MH63RS3_INV1203500,OglaRS2_MH63RS3_TRA1208340,OglaRS2_MH63RS3_DEL1234410,OglaRS2_MH63RS3_DEL1243470,OglaRS2_MH63RS3_DEL1243550,Nipponbare_MH63RS3_DEL1209030,Nipponbare_MH63RS3_DEL1208290,127742_MH63RS3_INV1203320,127742_MH63RS3_DEL1206230,125827_MH63RS3_INV1203760,LJ_MH63RS3_TRA1241580,
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| DNA seq | TTACGGCAATAGATCGGCGGTGACGGTTGTCCGCACGTACTTTCTCCTCACTGTTGTTCCTTCCTTGTGATCGCTACATGAGTAAGGGGTGTCTTCGTTTGATAGGAGGATGCTAGGGTCAACCGTCACCGTGAAAGGGGGTTGCCCATCAAACTGATCGTAATCCTCGTCAGTCTTGTCCTCTACTCCGATGATTTTTCTTTTGCCTGGGAGAACCACGTGGCGCTTCGGCTCGTCAGGCCCTTTGCCCTTCTTTCCTTTGCTAGACATGTCCTTCACATAAAAAACTTGCGTTACATCATTGGCAAGGACAAAAGGTTCGTCCGAGTATCTAACCTTGTTAAGGTCAACCGTTGTCATCCCACTATCATCAATCGTTACGCCTCCACCAGTCAACCTAACCCATTGGCACTGGAACAGAGGGACCTTGAGAGGTCCATATTCAAGTTTCCATATCTCCTCGATGGCACCGTAATACGTGCCAGTTGTACCATCGTGTCCCATGGCATCGATACGAACAGCACTGTTCTGGTTCGTGCTCTTCATGTCTTGGGCTCTTGTGTAGAATGTGTACCCATTGATCTCATATCCCTGGAATGTCGCGATCGAGCCAGATGGACCCCTCGCCAGGAAGGCCAATTGCTGGTTAATCGTCTCGTTACCCATGAGATGTTGTCGTAGCCATGCGGGGAAAGTATCAATGTGATGCCGTGTAATCCATGCATCGGACTTACCGATGTTTCTGGCGCGAACTAGAGCCAAGTGCTCCTCGATGTAAGGAGCCACCAATGAAGATTGTTGTAAAACCGTGAAATGGGCTTTACGGAATAAATTGTTGTCTACCGTCATTATTGCTTTCCTTCCGAGAGTCCCCTTTCCCCGTAGTCTCCCTTCATGGCGTGATTCAGGTACCCTGATTGGGCGAAGGTCTTCAATAAATTCTATGCAGAATTCAATGACCTCCTCTGTTCCATACCCCTTGGCGATGCTTGCCTCTGGACGAGCACGGTTACGAACATACTTCTTCAGAACGCCCATGTACCTCTCGAAAGGAAACATGTTGTGTAGAAACACAGGCCCGAGAATACCGATCTCTTTCACTAGGTGACAAAGCAGATGCGTCATTATATTGAAAAATGAAGGTGGAAATATCAACTCAAAGCTGACAAGACATTGCACCACATCATTCTGAAGAGCTTCTAACCTATCCAGATCGATGATCTTCTGCGAAATTGCGTTCATGAAAGAACATAGCTTTGTTATTGTTGCCCGGACATTGTCTGGGAGGATACCCCTTATTATAACTGGTAGCAGTTGTGTCATCAACACGTGACAGTCATGAGACTTTAGGTTTGTGAACTTCTTCTCCTTCGTGCTTATTATTCGCTTTATATTCGTGGAGTATCCAGATGGTACCTTGATGCTCTCCAAGCATTGAAACATACTTTCCTCCTCTCCCTTGCTAAGAGTGTAACTGGCTGGACTCAAGTAATGGATGCCTTTCTCCTTTGGTTCCGGGTGAAGGTCACCACGTTGTTCCATATGCTTCAGATCATTACGTGCTTCCAGTGTATCTTTCGACTTTCCATATACACCTAGGAAGCCAAGAAGGTTTACGCAAAGGTTCTTAGTGAGGTGCATTACGTCGATTGCGTGGTGGACGTCCAAGAATTCCCAATAGGGTAACTTCCAAAATATGGAGTTTTTTTTCCACATCGCCGCGTGACCATCTTCGCTCTCTATAGGCTGGCTGCCAGGCCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACATTGTTTTCCCGCTGCGATGTTTAGGCTTCGTACGGTGGTCCGCCATATGTTCAAAGTGCTTGCCTTTCTTCCGTACTGGGTGGTTTGCTACAAGGAATCGACGATGACCCATGTACACAACCTTCCTACAGTGCTTAAGATACGTACTTTCTGTTTCATCCAT
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| CDS seq | MDETESTYLKHCRKVVYMGHRRFLVANHPVRKKGKHFEHMADHRTKPKHRSGKTMFAMVKDLKVVFGKGPGSQPIESEDGHAAMWKKNSIFWKLPYWEFLDVHHAIDVMHLTKNLCVNLLGFLGVYGKSKDTLEARNDLKHMEQRGDLHPEPKEKGIHYLSPASYTLSKGEEESMFQCLESIKVPSGYSTNIKRIISTKEKKFTNLKSHDCHVLMTQLLPVIIRGILPDNVRATITKLCSFMNAISQKIIDLDRLEALQNDVVQCLVSFELIFPPSFFNIMTHLLCHLVKEIGILGPVFLHNMFPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCIEFIEDLRPIRVPESRHEGRLRGKGTLGRKAIMTVDNNLFRKAHFTVLQQSSLVAPYIEEHLALVRARNIGKSDAWITRHHIDTFPAWLRQHLMGNETINQQLAFLARGPSGSIATFQGYEINGYTFYTRAQDMKSTNQNSAVRIDAMGHDGTTGTYYGAIEEIWKLEYGPLKVPLFQCQWVRLTGGGVTIDDSGMTTVDLNKVRYSDEPFVLANDVTQVFYVKDMSSKGKKGKGPDEPKRHVVLPGKRKIIGVEDKTDEDYDQFDGQPPFTVTVDPSILLSNEDTPYSCSDHKEGTTVRRKYVRTTVTADLLP
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| Protein seq | MDETESTYLKHCRKVVYMGHRRFLVANHPVRKKGKHFEHMADHRTKPKHRSGKTMFAMVKDLKVVFGKGPGSQPIESEDGHAAMWKKNSIFWKLPYWEFLDVHHAIDVMHLTKNLCVNLLGFLGVYGKSKDTLEARNDLKHMEQRGDLHPEPKEKGIHYLSPASYTLSKGEEESMFQCLESIKVPSGYSTNIKRIISTKEKKFTNLKSHDCHVLMTQLLPVIIRGILPDNVRATITKLCSFMNAISQKIIDLDRLEALQNDVVQCLVSFELIFPPSFFNIMTHLLCHLVKEIGILGPVFLHNMFPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCIEFIEDLRPIRVPESRHEGRLRGKGTLGRKAIMTVDNNLFRKAHFTVLQQSSLVAPYIEEHLALVRARNIGKSDAWITRHHIDTFPAWLRQHLMGNETINQQLAFLARGPSGSIATFQGYEINGYTFYTRAQDMKSTNQNSAVRIDAMGHDGTTGTYYGAIEEIWKLEYGPLKVPLFQCQWVRLTGGGVTIDDSGMTTVDLNKVRYSDEPFVLANDVTQVFYVKDMSSKGKKGKGPDEPKRHVVLPGKRKIIGVEDKTDEDYDQFDGQPPFTVTVDPSILLSNEDTPYSCSDHKEGTTVRRKYVRTTVTADLLP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0088600 | OsMH63_12T0088600.1 | Chr12 | 5551164 | 5553128 | - | maker | ||
| CDS seq | ATGGATGAAACAGAAAGTACGTATCTTAAGCACTGTAGGAAGGTTGTGTACATGGGTCATCGTCGATTCCTTGTAGCAAACCACCCAGTACGGAAGAAAGGCAAGCACTTTGAACATATGGCGGACCACCGTACGAAGCCTAAACATCGCAGCGGGAAAACAATGTTTGCTATGGTTAAAGATCTTAAAGTAGTGTTTGGAAAGGGGCCTGGCAGCCAGCCTATAGAGAGCGAAGATGGTCACGCGGCGATGTGGAAAAAAAACTCCATATTTTGGAAGTTACCCTATTGGGAATTCTTGGACGTCCACCACGCAATCGACGTAATGCACCTCACTAAGAACCTTTGCGTAAACCTTCTTGGCTTCCTAGGTGTATATGGAAAGTCGAAAGATACACTGGAAGCACGTAATGATCTGAAGCATATGGAACAACGTGGTGACCTTCACCCGGAACCAAAGGAGAAAGGCATCCATTACTTGAGTCCAGCCAGTTACACTCTTAGCAAGGGAGAGGAGGAAAGTATGTTTCAATGCTTGGAGAGCATCAAGGTACCATCTGGATACTCCACGAATATAAAGCGAATAATAAGCACGAAGGAGAAGAAGTTCACAAACCTAAAGTCTCATGACTGTCACGTGTTGATGACACAACTGCTACCAGTTATAATAAGGGGTATCCTCCCAGACAATGTCCGGGCAACAATAACAAAGCTATGTTCTTTCATGAACGCAATTTCGCAGAAGATCATCGATCTGGATAGGTTAGAAGCTCTTCAGAATGATGTGGTGCAATGTCTTGTCAGCTTTGAGTTGATATTTCCACCTTCATTTTTCAATATAATGACGCATCTGCTTTGTCACCTAGTGAAAGAGATCGGTATTCTCGGGCCTGTGTTTCTACACAACATGTTTCCTTTCGAGAGGTACATGGGCGTTCTGAAGAAGTATGTTCGTAACCGTGCTCGTCCAGAGGCAAGCATCGCCAAGGGGTATGGAACAGAGGAGGTCATTGAATTCTGCATAGAATTTATTGAAGACCTTCGCCCAATCAGGGTACCTGAATCACGCCATGAAGGGAGACTACGGGGAAAGGGGACTCTCGGAAGGAAAGCAATAATGACGGTAGACAACAATTTATTCCGTAAAGCCCATTTCACGGTTTTACAACAATCTTCATTGGTGGCTCCTTACATCGAGGAGCACTTGGCTCTAGTTCGCGCCAGAAACATCGGTAAGTCCGATGCATGGATTACACGGCATCACATTGATACTTTCCCCGCATGGCTACGACAACATCTCATGGGTAACGAGACGATTAACCAGCAATTGGCCTTCCTGGCGAGGGGTCCATCTGGCTCGATCGCGACATTCCAGGGATATGAGATCAATGGGTACACATTCTACACAAGAGCCCAAGACATGAAGAGCACGAACCAGAACAGTGCTGTTCGTATCGATGCCATGGGACACGATGGTACAACTGGCACGTATTACGGTGCCATCGAGGAGATATGGAAACTTGAATATGGACCTCTCAAGGTCCCTCTGTTCCAGTGCCAATGGGTTAGGTTGACTGGTGGAGGCGTAACGATTGATGATAGTGGGATGACAACGGTTGACCTTAACAAGGTTAGATACTCGGACGAACCTTTTGTCCTTGCCAATGATGTAACGCAAGTTTTTTATGTGAAGGACATGTCTAGCAAAGGAAAGAAGGGCAAAGGGCCTGACGAGCCGAAGCGCCACGTGGTTCTCCCAGGCAAAAGAAAAATCATCGGAGTAGAGGACAAGACTGACGAGGATTACGATCAGTTTGATGGGCAACCCCCTTTCACGGTGACGGTTGACCCTAGCATCCTCCTATCAAACGAAGACACCCCTTACTCATGTAGCGATCACAAGGAAGGAACAACAGTGAGGAGAAAGTACGTGCGGACAACCGTCACCGCCGATCTATTGCCGTAA
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| Protein seq | MDETESTYLKHCRKVVYMGHRRFLVANHPVRKKGKHFEHMADHRTKPKHRSGKTMFAMVKDLKVVFGKGPGSQPIESEDGHAAMWKKNSIFWKLPYWEFLDVHHAIDVMHLTKNLCVNLLGFLGVYGKSKDTLEARNDLKHMEQRGDLHPEPKEKGIHYLSPASYTLSKGEEESMFQCLESIKVPSGYSTNIKRIISTKEKKFTNLKSHDCHVLMTQLLPVIIRGILPDNVRATITKLCSFMNAISQKIIDLDRLEALQNDVVQCLVSFELIFPPSFFNIMTHLLCHLVKEIGILGPVFLHNMFPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCIEFIEDLRPIRVPESRHEGRLRGKGTLGRKAIMTVDNNLFRKAHFTVLQQSSLVAPYIEEHLALVRARNIGKSDAWITRHHIDTFPAWLRQHLMGNETINQQLAFLARGPSGSIATFQGYEINGYTFYTRAQDMKSTNQNSAVRIDAMGHDGTTGTYYGAIEEIWKLEYGPLKVPLFQCQWVRLTGGGVTIDDSGMTTVDLNKVRYSDEPFVLANDVTQVFYVKDMSSKGKKGKGPDEPKRHVVLPGKRKIIGVEDKTDEDYDQFDGQPPFTVTVDPSILLSNEDTPYSCSDHKEGTTVRRKYVRTTVTADLLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g12210 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0135900 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0094400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | R9311C12g38775 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_12g0065400 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_12g0098000 | SBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0066500 | SBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0066500 | SBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1237450200.01 | SBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_026019 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1233802800.01 | SBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1235857000.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1180002108.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232729600.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231671000.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1123035600.01 | SBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1222476700.01 | SBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1280003416.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1280002902.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1280002593.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1280003290.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233693000.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1219031100.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0680001903.01 | SBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1122641900.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1129963700.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1221095400.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1223375500.01 | SBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1245034600.01 | SBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1280002602.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0880002189.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221700300.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0818690800.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1280002589.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1231766400.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1231089400.01 | SBH | None | None | None |
