Variation ID: OglaRS2_MH63RS3_DEL1234410

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os O.glaberrima: OglaRS2 | OglaRS2
Os XI-adm: Minghui 63 | MH63RS3
Chr12
14678000
14679063
SV Length:
Query Start:
Query End:
Allele sv Count:
1085 bp
5552892
5553976
45
Gene_id Chromosome Start End
OsMH63_12G0088600 Chr12 5551163 5553128
OsMH63_12G0088700 Chr12 5553188 5554259
SV_id Chromosome ref_start ref_end query_start query_end length
OglaRS2_02428_DEL1233060 Chr12 14678000 14679063 9312259 9313342 1084
OglaRS2_117425_DEL1234550 Chr12 14678000 14679063 5821924 5823007 1084
OglaRS2_117534_DEL1234610 Chr12 14678000 14679063 16158499 16159583 1085
OglaRS2_125619_DEL1237640 Chr12 14678000 14678474 4574217 4574691 475
OglaRS2_125827_DEL1236320 Chr12 14678000 14682230 7767329 7772837 5509
OglaRS2_127518_DEL1233950 Chr12 14678000 14679063 16373642 16374726 1085
OglaRS2_127564_DEL1234570 Chr12 14678000 14679063 9126283 9127366 1084
OglaRS2_127652_DEL1233160 Chr12 14678000 14679063 5758036 5759120 1085
OglaRS2_127742_DEL1235240 Chr12 14678000 14679063 15284004 15285088 1085
OglaRS2_128077_DEL1234970 Chr12 14678000 14681042 18958789 18960751 1963
OglaRS2_132278_DEL1235560 Chr12 14678000 14681042 19480093 19482055 1963
OglaRS2_132424_DEL1235000 Chr12 14678000 14679063 9164990 9166073 1084
OglaRS2_Azucena_DEL1234920 Chr12 14678000 14681042 19612836 19614798 1963
OglaRS2_Basmati1_DEL1235680 Chr12 14678000 14679063 7641359 7642443 1085
OglaRS2_CN1_DEL1234760 Chr12 14678000 14679063 9168942 9170025 1084
OglaRS2_D62_DEL1234530 Chr12 14678000 14679063 9277046 9278129 1084
OglaRS2_DG_DEL1234870 Chr12 14678000 14679063 16475923 16477007 1085
OglaRS2_DHX2_DEL1233770 Chr12 14678000 14679063 9298758 9299840 1083
OglaRS2_FH838_DEL1233960 Chr12 14678000 14679063 5549327 5550411 1085
OglaRS2_FS32_DEL1235390 Chr12 14678000 14679063 9203035 9204118 1084
OglaRS2_G46_DEL1234990 Chr12 14678000 14679063 13224154 13225238 1085
OglaRS2_G630_DEL1234850 Chr12 14678000 14682230 7811582 7817089 5508
OglaRS2_HZ_DEL1234770 Chr12 14678000 14679063 9129827 9130910 1084
OglaRS2_II32_DEL1235080 Chr12 14678000 14679063 15262309 15263393 1085
OglaRS2_IR64_DEL1234480 Chr12 14678000 14679063 9092418 9093501 1084
OglaRS2_J4155_DEL1234640 Chr12 14678000 14679063 15893048 15894132 1085
OglaRS2_J4155S_DEL1235190 Chr12 14678000 14679063 16080995 16082079 1085
OglaRS2_Kosh_DEL1234240 Chr12 14678000 14679063 9269640 9270723 1084
OglaRS2_KY131_DEL1233240 Chr12 14678000 14679063 9160848 9161931 1084
OglaRS2_Lemont_DEL1234200 Chr12 14678000 14679063 16284780 16285864 1085
OglaRS2_LK638S_DEL1234550 Chr12 14678000 14679063 5602187 5603271 1085
OglaRS2_NamRoo_DEL1235090 Chr12 14678000 14681042 18977783 18979745 1963
OglaRS2_Nipponbare_DEL1235010 Chr12 14678000 14679063 6114480 6115564 1085
OglaRS2_R498_DEL1234860 Chr12 14678000 14679063 7476867 7477951 1085
OglaRS2_R9311_DEL1235000 Chr12 14678000 14679063 15366207 15367291 1085
OglaRS2_S548_DEL1234920 Chr12 14678000 14679063 9249902 9250985 1084
OglaRS2_TM_DEL1234090 Chr12 14678000 14679063 13410032 13411116 1085
OglaRS2_Tumba_DEL1235300 Chr12 14678000 14679063 5653727 5654811 1085
OglaRS2_WSSM_DEL1234660 Chr12 14678000 14679063 9070315 9071398 1084
OglaRS2_XL628S_DEL1234350 Chr12 14678000 14679063 13245582 13246666 1085
OglaRS2_Y3551_DEL1234030 Chr12 14678000 14679063 5549650 5550734 1085
OglaRS2_Y58S_DEL1235270 Chr12 14678000 14679063 16404552 16405636 1085
OglaRS2_ZH11_DEL1234630 Chr12 14678000 14679063 9231206 9232289 1084
OglaRS2_ZS97RS3_DEL1234840 Chr12 14678000 14679063 13190012 13191096 1085
OglaRS2_MH63RS3_DEL1234410 Chr12 14678000 14679063 5552892 5553976 1085

>OglaRS2_MH63RS3_DEL1234410
ATCTTCGCTCTCTATAGGCTGGCTGCCAGGCCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACATTGTTTTCCCGCTGCGATGTTTAGGCTTCGTACGGTGGTCCGCCATATGTTCAAAGTGCTTGCCTTTCTTCCGTACTGGGTGGTTTGCTACAAGGAATCGACGATGACCCATGTACACAACCTTCCTACAGTGCTTAAGATACGTACTTTCTGTTTCATCCATACAGCGAGTGCAAGCCTTGTACCCCTTGTTGGACTGCCCGGATAGGTTGTTAAGTGCAGGCTAATCGTTGATGGTTACGAACAGTAGCGCTCGTAGGTTAAACTCCTCCTGTTTGTCCTCATCCCACACGGGGACACCTTCCTTCTTCCACAACAGTTTAAGATCTTCGACCAGTGGTCTTAGGAATACATCGATGTCGTTACCAGGTTGCTTGGGGCCTTGAATAATAATCGGCATCATTATGTACTTCCTCTTCATGCATAGCCAAGGGGGGAGGTTGTAGATACACATCGTAACGGGCCAAGTGCTATGGCCGCTGCTCATCTCTCCAAAAGGATTCATGCCATCCGTACTTAAACCAAACCGTATGTTTCGTGCGTCCTTTCCAAAGTCTTTAAATTTTCTGTCGATGTTTCGCCACTGCGAACCATCTGCGGGGTGTCTCAGCATCCCGTCCTGTTGACGTTCTTCAGCATGCCAACGCATCATTCTAGCATTCCCCTTGTTCCTGAACAAACGCCTTAGCCGTGGTATTATAGGGAAATACCACATCACCTTAGCAGGAATTCTCTTCTTCGTTAGCTGCCCGTCAACCTCACCTGGATCATCTCGTCTAATCTTGTATCGTAGTGCTTTACAAACAGCGCATGCTTCTAGGTTCTCGTACTCCTCACCACGATATAGGATACAATCATTCGGACATGCGTGAATCTTCTGAACTTCCAGTCCTAGAGGGCAGACTATCTTCTTAGCCTCGTACGTTGTCTCGGGCAATTTGTTTCCCTCCGGAAGAATGTTCTTGACGAGTTTCAATAAATCGCCAAATGCCTTGTCACTACCACCATTTT

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Huazhong Agricultural University

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