Variation ID: Nipponbare_MH63RS3_DEL1209030

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os GJ-temp: Nipponbare | IRGSP 1.0
Os XI-adm: Minghui 63 | MH63RS3
Chr12
6147597
6149409
SV Length:
Query Start:
Query End:
Allele sv Count:
1813 bp
5551812
5553624
20
Gene_id Chromosome Start End
OsMH63_12G0088600 Chr12 5551163 5553128
OsMH63_12G0088700 Chr12 5553188 5554259
SV_id Chromosome ref_start ref_end query_start query_end length
Nipponbare_02428_DEL1201970 Chr12 6147597 6149408 13511842 13513652 1811
Nipponbare_117425_DEL1203990 Chr12 6147597 6149409 7790198 7792011 1814
Nipponbare_117534_DEL1207260 Chr12 6147597 6149409 7445008 7446821 1814
Nipponbare_128077_DEL1204650 Chr12 6147597 6149408 21356349 21358160 1812
Nipponbare_132278_DEL1204270 Chr12 6147597 6149408 7585485 7587296 1812
Nipponbare_Azucena_DEL1203180 Chr12 6147597 6149408 9640648 9642458 1811
Nipponbare_DHX2_DEL1202480 Chr12 6147597 6149408 408826 410636 1811
Nipponbare_FH838_DEL1209110 Chr12 6147597 6149409 5548247 5550059 1813
Nipponbare_Kosh_DEL1202860 Chr12 6147597 6149408 12642229 12644039 1811
Nipponbare_KY131_DEL1202060 Chr12 6147597 6149408 8943916 8945726 1811
Nipponbare_LJ_DEL1202730 Chr12 6147597 6149408 12932771 12934581 1811
Nipponbare_LK638S_DEL1209750 Chr12 6147597 6149409 5601107 5602919 1813
Nipponbare_NamRoo_DEL1205670 Chr12 6147597 6149408 4087912 4089723 1812
Nipponbare_R498_DEL1209170 Chr12 6147597 6149409 5563206 5565018 1813
Nipponbare_XL628S_DEL1209670 Chr12 6147597 6149409 5593163 5594975 1813
Nipponbare_Y3551_DEL1209030 Chr12 6147597 6149409 5548570 5550382 1813
Nipponbare_ZH11_DEL1201980 Chr12 6147597 6149408 12544051 12545861 1811
Nipponbare_ZS97RS3_DEL1209400 Chr12 6147597 6149409 5570479 5572291 1813
Nipponbare_OglaRS2_DEL1211940 Chr12 6147597 6148575 17768881 17769860 980
Nipponbare_MH63RS3_DEL1209030 Chr12 6147597 6149409 5551812 5553624 1813

>Nipponbare_MH63RS3_DEL1209030
AATCGTCTCGTTACCCATGAGATGTTGTCGTAGCCATGCGGGGAAAGTATCAATGTGATGCCGTGTAATCCATGCATCGGACTTACCGATGTTTCTGGCGCGAACTAGAGCCAAGTGCTCCTCGATGTAAGGAGCCACCAATGAAGATTGTTGTAAAACCGTGAAATGGGCTTTACGGAATAAATTGTTGTCTACCGTCATTATTGCTTTCCTTCCGAGAGTCCCCTTTCCCCGTAGTCTCCCTTCATGGCGTGATTCAGGTACCCTGATTGGGCGAAGGTCTTCAATAAATTCTATGCAGAATTCAATGACCTCCTCTGTTCCATACCCCTTGGCGATGCTTGCCTCTGGACGAGCACGGTTACGAACATACTTCTTCAGAACGCCCATGTACCTCTCGAAAGGAAACATGTTGTGTAGAAACACAGGCCCGAGAATACCGATCTCTTTCACTAGGTGACAAAGCAGATGCGTCATTATATTGAAAAATGAAGGTGGAAATATCAACTCAAAGCTGACAAGACATTGCACCACATCATTCTGAAGAGCTTCTAACCTATCCAGATCGATGATCTTCTGCGAAATTGCGTTCATGAAAGAACATAGCTTTGTTATTGTTGCCCGGACATTGTCTGGGAGGATACCCCTTATTATAACTGGTAGCAGTTGTGTCATCAACACGTGACAGTCATGAGACTTTAGGTTTGTGAACTTCTTCTCCTTCGTGCTTATTATTCGCTTTATATTCGTGGAGTATCCAGATGGTACCTTGATGCTCTCCAAGCATTGAAACATACTTTCCTCCTCTCCCTTGCTAAGAGTGTAACTGGCTGGACTCAAGTAATGGATGCCTTTCTCCTTTGGTTCCGGGTGAAGGTCACCACGTTGTTCCATATGCTTCAGATCATTACGTGCTTCCAGTGTATCTTTCGACTTTCCATATACACCTAGGAAGCCAAGAAGGTTTACGCAAAGGTTCTTAGTGAGGTGCATTACGTCGATTGCGTGGTGGACGTCCAAGAATTCCCAATAGGGTAACTTCCAAAATATGGAGTTTTTTTTCCACATCGCCGCGTGACCATCTTCGCTCTCTATAGGCTGGCTGCCAGGCCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACATTGTTTTCCCGCTGCGATGTTTAGGCTTCGTACGGTGGTCCGCCATATGTTCAAAGTGCTTGCCTTTCTTCCGTACTGGGTGGTTTGCTACAAGGAATCGACGATGACCCATGTACACAACCTTCCTACAGTGCTTAAGATACGTACTTTCTGTTTCATCCATACAGCGAGTGCAAGCCTTGTACCCCTTGTTGGACTGCCCGGATAGGTTGTTAAGTGCAGGCTAATCGTTGATGGTTACGAACAGTAGCGCTCGTAGGTTAAACTCCTCCTGTTTGTCCTCATCCCACACGGGGACACCTTCCTTCTTCCACAACAGTTTAAGATCTTCGACCAGTGGTCTTAGGAATACATCGATGTCGTTACCAGGTTGCTTGGGGCCTTGAATAATAATCGGCATCATTATGTACTTCCTCTTCATGCATAGCCAAGGGGGGAGGTTGTAGATACACATCGTAACGGGCCAAGTGCTATGGCCGCTGCTCATCTCTCCAAAAGGATTCATGCCATCCGTACTTAAACCAAACCGTATGTTTCGTGCGTCCTTTCCAAAGTCTTTAAATTTTCTGTCGATGTTTCGCCACTGCGAACCATCTGCGGGGTGTCTCAGCATCCCGTCCTGTTGACGTTCTTCAGCATGCCAACGCATCATTCTAGCA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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