Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Nipponbare_117534_DEL1207260

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-temp: Nipponbare | IRGSP 1.0

Os cA1: N22 | OsN22RS2

Chr12

6147597

6149409

SV Length:

Query Start:

Query End:

Allele sv Count:

1814 bp

7445008

7446821

20 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Nipponbare_02428_DEL1201970	Chr12	6147597	6149408	13511842	13513652	1811
Nipponbare_117425_DEL1203990	Chr12	6147597	6149409	7790198	7792011	1814
Nipponbare_117534_DEL1207260	Chr12	6147597	6149409	7445008	7446821	1814
Nipponbare_128077_DEL1204650	Chr12	6147597	6149408	21356349	21358160	1812
Nipponbare_132278_DEL1204270	Chr12	6147597	6149408	7585485	7587296	1812
Nipponbare_Azucena_DEL1203180	Chr12	6147597	6149408	9640648	9642458	1811
Nipponbare_DHX2_DEL1202480	Chr12	6147597	6149408	408826	410636	1811
Nipponbare_FH838_DEL1209110	Chr12	6147597	6149409	5548247	5550059	1813
Nipponbare_Kosh_DEL1202860	Chr12	6147597	6149408	12642229	12644039	1811
Nipponbare_KY131_DEL1202060	Chr12	6147597	6149408	8943916	8945726	1811
Nipponbare_LJ_DEL1202730	Chr12	6147597	6149408	12932771	12934581	1811
Nipponbare_LK638S_DEL1209750	Chr12	6147597	6149409	5601107	5602919	1813
Nipponbare_NamRoo_DEL1205670	Chr12	6147597	6149408	4087912	4089723	1812
Nipponbare_R498_DEL1209170	Chr12	6147597	6149409	5563206	5565018	1813
Nipponbare_XL628S_DEL1209670	Chr12	6147597	6149409	5593163	5594975	1813
Nipponbare_Y3551_DEL1209030	Chr12	6147597	6149409	5548570	5550382	1813
Nipponbare_ZH11_DEL1201980	Chr12	6147597	6149408	12544051	12545861	1811
Nipponbare_ZS97RS3_DEL1209400	Chr12	6147597	6149409	5570479	5572291	1813
Nipponbare_OglaRS2_DEL1211940	Chr12	6147597	6148575	17768881	17769860	980
Nipponbare_MH63RS3_DEL1209030	Chr12	6147597	6149409	5551812	5553624	1813

>Nipponbare_117534_DEL1207260
TGCTAGAATGATGCGTTGGCACGCTGAAGAACGTCAACAGGACGGGATGTTGAGACACCCCGCAGATGGTTCGCAGTGGCGAAACATCGACAGAAAATTTAAAGACTTTGGAAAGGACGCACGAAACATACGGTTTGGTTTAAGTACGGATGGCATGAATCCTTTTGGAGAGATGAGCAGCGGCCATAGCACTTGGCCCGTTACGATGTGTATCTACAACCTCCCCCCTTGGCTATGCATGAAGAGGAAGTACATAATGATGCCGATTATTATTCAAGGCCCCAAGCAACCTAGTAATGACATCGATGTGTTCCTAAGACCACTGGTCGAAGATCTTAAACTGTTGTGGAAGAAGGAAGGTGTCCCCGTGTGGGACGAGGACAAACAGGACGAGTTTAACCTACGAGCGCTGCTGTTCGTAACCATCAACGATTGGCTTGTACTTAGCAACCTATCCGGGCAGTCAAACAAGGGGTACAAGGCTTGCACTCACTGTATGGATGAAACAGAAAGTACGTATCTTAAGCACTGTAGGAAGGTTGTGTACATGGGTCATCGTCGATTTCTTGCTGCAAACCACCTAGTACGGAAGAAAGGCAAGCACTTTGAACATAAGGCGGACCACCGTACGAAGCCTAAACATCCCAATGGAAAAACAGTGTTTGCTATGGTGAAAGATCTTAAAGTAGTGTTTGGAAAGGGGCTTGGCAGCCAGCCTATAGAGTGCGAAGATTGTCACACGGCGATGTGGAAAAAAAACTCCATATTTGTGGAGTTACCTTATTGGGAATTCTTGGACGTCTACCACACAATCGATGTGATGCACCTCACTAAGAACCTTTGGCGTAAACCTTCTTGGCTTCCTAGGTGTATATGGAAAGTCGAAATATACACTGGAAGCACGTAATGATCTGAAGCATATGGAACAACGCGGCGACCTTCACCCGGAACCAAAGGAGAAAGGCAGCCATTACTTGAGTCCAGCCAGCTACACTCTTAGCAAGGCAGAGAAGGAAAGTATGTTTCAGTGCTTGGAGAGCATCAAGGTACCATCTGGATACTCCACGAATATAAAGCGAATAATATGCACGAAGGAGAAGAAGTTCACAAACCTAAAGTCTCATGACTGTCACGTGTTGATGACACAGCTGCTACCAGTTATAATAAGGGGTATCCTCCCAGACAATGTCCGGGCAACAATAACAAAGCTATGTTCTTTCATGAACGCAATTTCGCAGAAGGTCATCGATCCGGATAGGTTAGAAGCCCTTCAGAATGATGTGGTGCAATGTCTTGTCAGCTTTGAGTTGATATTTCCACCTTCATTTTTCAATATAATGACGCATCTGCTTTGTCACCTAGTGAAAGAGATCGGTATTTTCGGGCCTGTGTTCCTACACAACATGTTTCCTTTCGAGAGGTACATGGGCGTTCTGAAGAAGTATGTTCGTAACCGTGCTCGTCTAGAGGCAAGCATCTCCAAGGGGTATGGAACAGAGGAGGTCATTGAATTCTGCATAGAATTTATTGAAGACCTTCGCCCAATCGGGGTACCTGAATCACGCCATGAAGGCAGACTACGGGGAAAGGGGATTCTCGGAAGGAAAGCAATAATGACGGTAGACAACAATGTATTCCGTAAAGCCCATTTCACGGTTTTACAACAATCTTCATTGGTGGCTCCTTACATCGAGGAGCACTTGGCTCTAGTTTGCGCCAGAAACATCGGTAAGTCCGATGCATGGATTACACGACATCACATTGATACTTTCCCTGCATGGCTGCGACACCATCTCATGGGTAACGAGACGATT